mRNA_C-linearis_contig104.896.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI) HSP 1 Score: 174 bits (440), Expect = 1.240e-46 Identity = 91/164 (55.49%), Postives = 110/164 (67.07%), Query Frame = 2 Query: 206 SCSSGRIGASPGLNGVGKPFNSGAGAAARDFSREGAGKKYYGLHVDVPMIKLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVSTKVYNETERKLAKSNQ 697
+ S + + PG VGKPFNSG GA ARDFS EGA K+YGLH+D+P LAA+L LVQ DGSL K PLC T+V P + G TKG+ FGL ++G+L++GVHN N V GGTIPVTT PPY VP FAIAPL AG+ VS K +N+ ER AK N+
Sbjct: 377 AASQKALNSGPGYGAVGKPFNSGNGATARDFSAEGANDKWYGLHLDIPTRDLAAKLRLLVQPDGSL-----KDAPLCDTEVNPDHPGLTKGRSTFGLDREGALIMGVHNGQSLNRCVGGGTIPVTTAAPPYRVPHFAIAPLLAGKIVSNKTHNKRERTRAKLNE 535
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match: D8LKS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS4_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.620e-39 Identity = 88/161 (54.66%), Postives = 102/161 (63.35%), Query Frame = 2 Query: 197 GYPSCSSGRIGASPGLNGVGKPFNSGAGAAARDFSREGAGKKYYGLHVDVPMIKLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVSTKVYNETERK 679
G + S I + G N G GAG AARDFS EGAG+KY+GL + +P KLAA L RLV+EDGSLLE L PLC DV+PGY G K KG FGL +G +VL VHNSNKPN VS G IPVTT+ PP+ VPAFAI P RAG+ + N K
Sbjct: 86 GQSTFRSTGIDSGGGDNQTGSAGWCGAGRAARDFSAEGAGEKYFGLRLKIPADKLAATLQRLVEEDGSLLEP---LPPLCGIDVSPGYPGVIKAKGTFGLD-EGRVVLRVHNSNKPNVCVSEGAIPVTTRTPPFKVPAFAIGPPRAGKLMLRNQNNANALK 242
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match: A0A6H5JI61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI61_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.620e-15 Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 2 Query: 437 STDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVSTKVYNETERK 679
S PGY G T+ KG+FGL +G +VL VHNSNKPN VS G IPVTT+ PP+ VPAFAI PLRAG+ + N K
Sbjct: 214 SDTQTPGYPGVTRAKGKFGLD-EGRVVLRVHNSNKPNVCVSEGAIPVTTRTPPFTVPAFAIGPLRAGKVIIRNQSNANALK 293
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match: D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 4.780e-9 Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 2 Query: 248 GVGKPFNSGAGAAARDFSREGAGKKYYGLHVDVPMIKLAAELARLVQEDGSLLE 409
GVGKP NSG G AARDFS EG+G++YYGLH+ +P L A+L LVQ DGSL E
Sbjct: 386 GVGKPSNSGDGHAARDFSEEGSGERYYGLHLALPTKDLRAQLPLLVQPDGSLKE 439 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.896.1 >prot_C-linearis_contig104.896.1 ID=prot_C-linearis_contig104.896.1|Name=mRNA_C-linearis_contig104.896.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp MIKLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLTback to top mRNA from alignment at C-linearis_contig104:350518..351437+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.896.1 ID=mRNA_C-linearis_contig104.896.1|Name=mRNA_C-linearis_contig104.896.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=920bp|location=Sequence derived from alignment at C-linearis_contig104:350518..351437+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:350518..351437+ >mRNA_C-linearis_contig104.896.1 ID=mRNA_C-linearis_contig104.896.1|Name=mRNA_C-linearis_contig104.896.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig104:350518..351437+ (Chordaria linearis ClinC8C monoicous)back to top |