mRNA_C-linearis_contig104.886.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Kinesin-like protein
Ec32 ortholog	Ec-27_000130.1
Exons	4
Model size	983
Cds size	564
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig104.886.1	prot_C-linearis_contig104.886.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig104 231083..232500 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927381.1250067-UTR-C-linearis_contig104:230663..231082	1622927381.1250067-UTR-C-linearis_contig104:230663..231082	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig104 230664..231082 -
1690879666.7205522-UTR-C-linearis_contig104:230663..231082	1690879666.7205522-UTR-C-linearis_contig104:230663..231082	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig104 230664..231082 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927381.1349387-CDS-C-linearis_contig104:231082..231180	1622927381.1349387-CDS-C-linearis_contig104:231082..231180	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 231083..231180 -
1690879666.7334652-CDS-C-linearis_contig104:231082..231180	1690879666.7334652-CDS-C-linearis_contig104:231082..231180	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 231083..231180 -
1622927381.1448681-CDS-C-linearis_contig104:231295..231499	1622927381.1448681-CDS-C-linearis_contig104:231295..231499	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 231296..231499 -
1690879666.7440302-CDS-C-linearis_contig104:231295..231499	1690879666.7440302-CDS-C-linearis_contig104:231295..231499	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 231296..231499 -
1622927381.153632-CDS-C-linearis_contig104:231519..231732	1622927381.153632-CDS-C-linearis_contig104:231519..231732	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 231520..231732 -
1690879666.75257-CDS-C-linearis_contig104:231519..231732	1690879666.75257-CDS-C-linearis_contig104:231519..231732	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 231520..231732 -
1622927381.165296-CDS-C-linearis_contig104:232451..232500	1622927381.165296-CDS-C-linearis_contig104:232451..232500	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 232452..232500 -
1690879666.7612627-CDS-C-linearis_contig104:232451..232500	1690879666.7612627-CDS-C-linearis_contig104:232451..232500	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 232452..232500 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig104:230664..232500-
coding sequence from alignment at C-linearis_contig104:230664..232500-

protein sequence of mRNA_C-linearis_contig104.886.1

>prot_C-linearis_contig104.886.1 ID=prot_C-linearis_contig104.886.1|Name=mRNA_C-linearis_contig104.886.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=188bp
GPSKRRARGSWSGRPHGRPTRKLLERRTSAPAPKKSWPPRWPSGISSRPS
PREKPTAQTPRRPRPPGFSGTIPKNGPRGGSWRASLSAEAGRVEGLEDKL
RSGQEEIARLESDKQEVLSAVPPAAAAVPVPGGSSAHSTPTVGGSSEEEE
DEDFGAAEAAAAAVAAAATTALLPTNNTGRPRRGRRT*

mRNA from alignment at C-linearis_contig104:230664..232500-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig104.886.1 ID=mRNA_C-linearis_contig104.886.1|Name=mRNA_C-linearis_contig104.886.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1837bp|location=Sequence derived from alignment at C-linearis_contig104:230664..232500- (Chordaria linearis ClinC8C monoicous)
GGGCCAAGCAAGCGGAGAGCGCGAGGAAGCTGGAGCGGGAGACCACACGG
TACGCTAACCCGTGGCGCCATGGGCTTGTGTTTGGTCTGGTTTGTCGTGG
TTCGGTTCTGTTTTTTTAACGCATCAAACAAGTTTTGTACGCAGTTGCAA
TCTTACGCGCCGTTTCTCTCGTTGTATTTCGCGCAATAAATTAGAGTTTG
GAAGCTCTTTCCCTCTTTAGTGCTATACACCTACGCACCTCTAAGTGGCG
CGAATGGTTCGGCAGTTTGTCCGTGCTCCGTCGAGATCGCATCCAGTCTA
GCCATCCTCTCCGGCAGGAAGCACCGTTGTCGTACATACGCCAACACGAT
TGCTTCACCGGTCAAGATTCCTAGCCAGGCCTCTGCGAGCGTTCCTCGCT
TGTCGCTGCCAAATTGGCTGGAATTACTTATAATTGACTAGATTGTTCGA
TTGGTAGCTGCACACGAGGAAAAAGAGAAAGTCTTAGCCTTGCATTGAGT
ACGGATGGAGTCTTCTCCCGGGTTCTTCAACAACAACAGGTAGAAAAGGT
TCCTCTCATCCGTGGAGTTCGCATGCCGCGCTCATTACCCCTCGCTTTCT
GCGTTCCGAAAGGCATACCACGACCCTTTGTTTCGACCAACGTCACTGGG
TTTGTTTCGCTCCACTAGACTGCACCTCTATTTTTTTGTTATTTCACCCC
CGAAAGCGCTGCTATTCCAAGCTTCCTCCACTGCTGTACGTTATTTCGTC
CACCAACAACGTATCCAGGGAGGCCGACGAGGAAGTTGCTCGAACGGCGA
ACGAGCGCGCCCGCGCCGAAGAAAAGCTGGCCGCCACGATGGCCGAGCGG
GATCAGCTCAAGACCTTCGCCGAGAGAGAAACCGACCGCGCAGACGCCGC
GGAGGCCAAGACCACCCGGGTTCTCAGGGACCATTCCGAAGAACGGTCCG
CGCGGCGGGAGCTGGAGGGCAAGTTTGAGCGGCTCGAAGAAACGGCGGCA
GCGGAGGCCGGCCGCGTGGAGGGCCTCGAGGATAAGCTTCGCTCGGGTCA
GGAGGAGATCGCCCGGCTTGAGAGCGACAAGCAGGAAGTGCTGTCGGCGG
TGCCCCCTGCGGCTGCGGCGGTGCCTGTTCCAGGGGGCAGCAGTGCGCAC
TCCACCCCGACCGTTGGGGGTAGCTCCGAGGAGGAAGAAGACGAGGACTT
CGGCGGCAGGTCGGGCGGCAGCTCGGAGAGCAGCCCTTTCGAGCACGGCG
GTAGCGGGCAGGAAGACGAGGAGCAAGACGGTTCATCGGTTATCATGCTC
AACGACTTCGGCAGAGGAAGCCGCGGAAGCAGCCGCAGCGGCAGTAGCAG
CAGCTGCAACAACGGCTCTCCTACCGACGAACAACACCGGGAGACCGAGG
AGGGGGAGGAGAACGTGACGGTCGGGGCGTCATCCCCTCCTCGTTCCGGC
AGCGCTTCCGCCGACGTCGGCGGCAACGACGACATCGGCGACATCGGCGA
CAACGACGACAGAAGCGACAACGACGACAGAAGCGAAGAAGTCGACGACG
AGGCTGCACCTCCTGCCGCAGAAAACCACGAGCCCTCATCGTTGCCGTCG
CCGCCGCCGAAGGTCGTCGCCAAGACGAGGAGCAGGAGGAGGGTGGGACA
GCTGGAGTCATTGCAGATCACAGCGAGCCCCGCGGGCGGAGCCGCCCACC
AGAGAAAGCCAAAGCAAAGGGCGGACCGCAAGCCCCTCGGGAACCTCCAG
AACGGGGCGACGCCGGCCCGAACGAAGGGCGCCAAGGGCGGCAAGAAGAA
GGTTGGCGTCGAGGAGAACCAGGAGGCGGCAGCGGTG

Coding sequence (CDS) from alignment at C-linearis_contig104:230664..232500-

>mRNA_C-linearis_contig104.886.1 ID=mRNA_C-linearis_contig104.886.1|Name=mRNA_C-linearis_contig104.886.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at C-linearis_contig104:230664..232500- (Chordaria linearis ClinC8C monoicous)
GGGCCAAGCAAGCGGAGAGCGCGAGGAAGCTGGAGCGGGAGACCACACGG
GGCCAAGCAAGCGGAGAGCGCGAGGAAGCTGGAGCGGGAGACCACACGGG
AGGCCGACGAGGAAGTTGCTCGAACGGCGAACGAGCGCGCCCGCGCCGAA
GAAAAGCTGGCCGCCACGATGGCCGAGCGGGATCAGCTCAAGACCTTCGC
CGAGAGAGAAACCGACCGCGCAGACGCCGCGGAGGCCAAGACCACCCGGG
TTCTCAGGGACCATTCCGAAGAACGGTCCGCGCGGCGGGAGCTGGAGGGC
AAGTTTGAGCGGGAGGCCGACGAGGAAGTTGCTCGAACGGCGAACGAGCG
CGCCCGCGCCGAAGAAAAGCTGGCCGCCACGATGGCCGAGCGGGATCAGC
TCAAGACCTTCGCCGAGAGAGAAACCGACCGCGCAGACGCCGCGGAGGCC
AAGACCACCCGGGTTCTCAGGGACCATTCCGAAGAACGGTCCGCGCGGCG
GGAGCTGGAGGGCAAGTTTGAGCGCGGAGGCCGGCCGCGTGGAGGGCCTC
GAGGATAAGCTTCGCTCGGGTCAGGAGGAGATCGCCCGGCTTGAGAGCGA
CAAGCAGGAAGTGCTGTCGGCGGTGCCCCCTGCGGCTGCGGCGGTGCCTG
TTCCAGGGGGCAGCAGTGCGCACTCCACCCCGACCGTTGGGGGTAGCTCC
GAGGAGGAAGAAGACGAGGACTTCGGCGCGGAGGCCGGCCGCGTGGAGGG
CCTCGAGGATAAGCTTCGCTCGGGTCAGGAGGAGATCGCCCGGCTTGAGA
GCGACAAGCAGGAAGTGCTGTCGGCGGTGCCCCCTGCGGCTGCGGCGGTG
CCTGTTCCAGGGGGCAGCAGTGCGCACTCCACCCCGACCGTTGGGGGTAG
CTCCGAGGAGGAAGAAGACGAGGACTTCGGCGCCGCGGAAGCAGCCGCAG
CGGCAGTAGCAGCAGCTGCAACAACGGCTCTCCTACCGACGAACAACACC
GGGAGACCGAGGAGGGGGAGGAGAACGTGACCGCGGAAGCAGCCGCAGCG
GCAGTAGCAGCAGCTGCAACAACGGCTCTCCTACCGACGAACAACACCGG
GAGACCGAGGAGGGGGAGGAGAACGTGA

mRNA_C-linearis_contig104.886.1 (mRNA) Chordaria linearis ClinC8C monoicous

ZOOM

x 1

POSITION

0