mRNA_C-linearis_contig104.884.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI) HSP 1 Score: 245 bits (626), Expect = 2.430e-75 Identity = 113/119 (94.96%), Postives = 117/119 (98.32%), Query Frame = 2 Query: 77 KMADTMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 433
KMADTMRFCSECNNIMHPKENK DRKL+Y+CNRC Y+EDAQSGSC+YRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS
Sbjct: 119 KMADTMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA) HSP 1 Score: 167 bits (424), Expect = 4.350e-47 Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 2 Query: 92 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 430
MRFC ECNNI+HPKEN+ R L YACNRC+Y+E+A SC+Y NNL+ T KLDIV DVV+DPTLQRSK+ IC++CNY+EAVFFQAD+ AKS SLSLIFVCT+ CG KWV
Sbjct: 1 MRFCKECNNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI) HSP 1 Score: 124 bits (310), Expect = 1.780e-30 Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 2 Query: 89 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 427
TM+FC ECNNI++P+ENKA+++L YAC RC + EDA+ SC+YRN + TA + ++Q DV DPTL RSK C C + EAVFFQA + + ++L FVC N C H+W
Sbjct: 3 TMKFCRECNNILYPRENKAEKRLEYACGRCDFSEDAEQ-SCVYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQATSRGE-EGMTLFFVCCNPNCQHRW 112
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A1B6PTV6_SORBI (DNA-directed RNA polymerase subunit n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6PTV6_SORBI) HSP 1 Score: 120 bits (300), Expect = 4.740e-29 Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 2 Query: 89 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 427
TMRFC ECNNI++PKE++A++ L+YAC C ++E A S +C+YRN + AG ++ DV DPTL R+K+ C C + EAVFFQA + ++L FVC N +CGH+W
Sbjct: 3 TMRFCRECNNILYPKEDRANKVLLYACRNCEHQEVADS-NCVYRNVVDHDAGELTQVLSEDVASDPTLPRTKSVRCAACGHGEAVFFQATTRGED-GMALFFVCCNPSCGHRW 113
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A7S3NJ32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ32_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.080e-28 Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 2 Query: 95 RFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 430
RFC +C N+ P+E + R L+ C C Y+E A S +Y N + +LDI+ ++ DDPTLQRS + +CE CNY+EAV FQA+ G ++SLSLIFVC N C HKW+
Sbjct: 34 RFCPQCGNMWQPREERTTRTLMLNCRNCGYEEPATSYK-VYENRIKKEVSTRLDIINPEITDDPTLQRSNDVVCENCNYSEAVLFQAESGITAKSLSLIFVCCN--CKHKWI 142
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: B8BUI2_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUI2_THAPS) HSP 1 Score: 118 bits (295), Expect = 2.230e-28 Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 2 Query: 92 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEG-AKSQSLSLIFVCTNRACGHKWVS 433
MRFC +++++PKEN+ +RKL+YAC C Y E A G IY+N L GN L V + V DDPTL RS+NA C+KC +NEAVFFQ+D ++ +L+LIFVC N C HKWV+
Sbjct: 1 MRFCPHDSSMLYPKENRNERKLLYACRLCRYTEYAP-GQLIYQNILKKEVGNVLHTVPSAVSDDPTLPRSQNAHCDKCGHNEAVFFQSDTSDVRNDTLALIFVCCN--CDHKWVA 112
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A843UFX2_COLES (TFIIS-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UFX2_COLES) HSP 1 Score: 121 bits (304), Expect = 4.100e-28 Identity = 57/119 (47.90%), Postives = 83/119 (69.75%), Query Frame = 2 Query: 71 LSKMADTMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 427
LS M+ TM+FC ECNNI++PKE++ + L+YAC C ++E A + +C+YRN + + G + ++Q DV DPTL R+KN C KCN+ EAVFFQA + + ++L FVC N +CGH+W
Sbjct: 124 LSNMS-TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVADN-NCVYRNEIHHSVGERTQVLQ-DVAADPTLPRTKNVRCAKCNHPEAVFFQAAARGE-EGMTLFFVCCNPSCGHRW 238
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A8H7UCI9_9FUNG (DNA-directed RNA polymerase subunit n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7UCI9_9FUNG) HSP 1 Score: 117 bits (292), Expect = 6.310e-28 Identity = 51/114 (44.74%), Postives = 81/114 (71.05%), Query Frame = 2 Query: 89 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 430
+ ++CSECNN+++P+E+K +RKL++AC C ++EDA + +C+YR+ ++ A ++ +V TD+ DPTL R+ A C +C Y EAVFFQ+ ++L +VC NRACGH+WV
Sbjct: 3 SFKYCSECNNMLYPREDKTNRKLLFACRNCHFEEDADN-NCVYRHEIVH-APSEQTMVLTDLSADPTLPRTTTA-CPRCGYQEAVFFQSAARRADTKMTLFYVCCNRACGHRWV 113
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: UPI001D0951AA (DNA-directed RNA polymerase II subunit RPB9 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D0951AA) HSP 1 Score: 117 bits (292), Expect = 1.070e-27 Identity = 55/112 (49.11%), Postives = 73/112 (65.18%), Query Frame = 2 Query: 92 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 427
+RFC ECNN+++PKE+K ++ L+YAC C YK+ A S +CIY N ++ IV DVV DPTL RS++ C KCNY EAVFFQA + + L +VCTN C H+W
Sbjct: 21 IRFCQECNNMLYPKEDKENKVLLYACRNCDYKQLADS-NCIYVNKIMHEIDELTHIVP-DVVSDPTLPRSEDHHCPKCNYREAVFFQAQTRRAEEEMRLYYVCTNPQCTHRW 130
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A8B7CCB1_PHODC (DNA-directed RNA polymerase subunit n=3 Tax=Arecaceae TaxID=4710 RepID=A0A8B7CCB1_PHODC) HSP 1 Score: 116 bits (290), Expect = 1.210e-27 Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = 2 Query: 92 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 427
M+FC ECNNI++PKE+K + L++AC C Y+E A S C+YRN + G + I+Q DV +DPTL R+K+ C KC++ EAVFFQA + + ++L FVC N ACG++W
Sbjct: 4 MKFCRECNNILYPKEDKQKKILLFACRNCDYEEVADS-FCVYRNEVHHAVGERTQILQ-DVANDPTLPRTKDVRCVKCDHPEAVFFQASSRGE-EGMTLFFVCCNPACGYRW 112 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.884.1 >prot_C-linearis_contig104.884.1 ID=prot_C-linearis_contig104.884.1|Name=mRNA_C-linearis_contig104.884.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=119bp MADTMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLback to top mRNA from alignment at C-linearis_contig104:208935..212038+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.884.1 ID=mRNA_C-linearis_contig104.884.1|Name=mRNA_C-linearis_contig104.884.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3104bp|location=Sequence derived from alignment at C-linearis_contig104:208935..212038+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:208935..212038+ >mRNA_C-linearis_contig104.884.1 ID=mRNA_C-linearis_contig104.884.1|Name=mRNA_C-linearis_contig104.884.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at C-linearis_contig104:208935..212038+ (Chordaria linearis ClinC8C monoicous)back to top |