mRNA_C-linearis_contig104.882.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Match: A0A6H5K3A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A1_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 1.530e-86
Identity = 218/412 (52.91%), Postives = 259/412 (62.86%), Query Frame = 1

Query:    1 PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVDTQELPHALVIVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPMEVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQ-VRQATRFCAEHGLHGDSARESLIDHMEEAIAGPVQAPES-------EETGTEGTTQERIDYHDPPEVDERLHAILHLQKTRARVMQESTASFEH-------------------------------HKKTLLSATRKLVERKTASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERVLAERRRETEAAAEGTGVIVSSPK 1119
            P  RA+DLL+VEVLRLDWQRI SIQNLDIFT LRELY    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            ED DTQELP ALVI+N++ NPCC +P FR ++   LP L  LD   +    + AGVEECKG +E S L   +++  D      L+VTV S G+S  VPF F       Q ++QA+RFC E+GLHGD  + +L D MEEAIAG      S        E  +E   ++  D  D  E D RL AI+ LQK RARVM+EST SFE                                HKK LL+ATRKLVERKTA+AH RS+ALEEDI KIL++AR ELQLRR R+S EN +FATD +EK+ERVLA+RR+E ++   G   +  SPK
Sbjct:   19 PEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLDLSANVI--EDFDTQELPPALVILNLSSNPCCLDPDFRQRVISCLPGLMALDEVPLVRSSRAAGVEECKGTIEDSQLPLEDEREDDNGGVVTLHVTVHSDGQSHNVPFHFCPTENTAQQLQQASRFCTENGLHGDDDKRNLADQMEEAIAGLKARHTSTGRGISDSERASEEANRKGPDRTDRHETDARLDAIVRLQKARARVMEESTTSFEQVATKHMRHNCLVCVTIFLELNDVVAFLLIMKHKKLLLAATRKLVERKTAAAHSRSNALEEDITKILEDARTELQLRRARVSAENMRFATDMKEKVERVLADRRQEFQSLM-GVRAVAISPK 427

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BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Match: D8LE54_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE54_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.180e-59
Identity = 193/380 (50.79%), Postives = 224/380 (58.95%), Query Frame = 1

Query:    1 PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVDTQELPHALVIVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPMEVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQVRQATRFCAEHGLHGDSARESLIDHMEEAIAG-------PVQAPESEETGTEGTTQERIDYHDPPEVDERLHAILHLQKTRARVMQESTASFEHHKKTLLSATRKLVERKTASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERVLAERRRETEAAAEGTGVIVSSPK 1119
            P  RA+DLL+VEVLRLDWQRI SIQNLDIFT LRELY    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   N CC +P FR ++   LP L                                                                     Q++QA+RFC E+GLHGD  + +L   MEEAIAG         +     E  +E   ++  D  D  E D RLHAI+ LQK RARVM+EST SFE HKK LL+ATRKLVE+KTA+AH RSDALEEDI KIL++ARAELQLRR R+S ENR+FATD REK+ERVLA+RR+E+++   G   +  SPK
Sbjct:   19 PEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLCCLDPDFRQRVISCLPGLM--------------------------------------------------------------------QLQQASRFCTENGLHGDDDKRNLAGQMEEAIAGLKARHISTGRVISDSERDSEEAHRKGPDRTDRHETDARLHAIVRLQKARARVMEESTTSFEQHKKLLLAATRKLVEQKTAAAHGRSDALEEDITKILEDARAELQLRRARVSAENRRFATDMREKVERVLADRRQESQSVV-GARAVAISPK 329

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot

BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5K3A1_9PHAE	1.530e-86	52.91	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LE54_ECTSI	1.180e-59	50.79	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	207.6
Seed ortholog evalue	1e-50
Seed eggNOG ortholog	2880.D8LE54
Hectar predicted targeting category	other localisation
EggNOG free text desc.	axoneme assembly
EggNOG OGs	COG4886@1,KOG0531@2759
Ec32 ortholog description	Hypothetical leucine rich repeat protein
Ec32 ortholog	Ec-00_000990.1
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	6
Model size	1134
Cds size	1134
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig104.882.1	prot_C-linearis_contig104.882.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig104 193699..196047 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927384.2520201-CDS-C-linearis_contig104:193698..193884	1622927384.2520201-CDS-C-linearis_contig104:193698..193884	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 193699..193884 -
1690879668.612214-CDS-C-linearis_contig104:193698..193884	1690879668.612214-CDS-C-linearis_contig104:193698..193884	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 193699..193884 -
1622927384.2613006-CDS-C-linearis_contig104:194156..194255	1622927384.2613006-CDS-C-linearis_contig104:194156..194255	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 194157..194255 -
1690879668.6242046-CDS-C-linearis_contig104:194156..194255	1690879668.6242046-CDS-C-linearis_contig104:194156..194255	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 194157..194255 -
1622927384.2715404-CDS-C-linearis_contig104:194470..194725	1622927384.2715404-CDS-C-linearis_contig104:194470..194725	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 194471..194725 -
1690879668.6339083-CDS-C-linearis_contig104:194470..194725	1690879668.6339083-CDS-C-linearis_contig104:194470..194725	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 194471..194725 -
1622927384.2819743-CDS-C-linearis_contig104:194865..195078	1622927384.2819743-CDS-C-linearis_contig104:194865..195078	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 194866..195078 -
1690879668.6465435-CDS-C-linearis_contig104:194865..195078	1690879668.6465435-CDS-C-linearis_contig104:194865..195078	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 194866..195078 -
1622927384.292664-CDS-C-linearis_contig104:195448..195601	1622927384.292664-CDS-C-linearis_contig104:195448..195601	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 195449..195601 -
1690879668.655284-CDS-C-linearis_contig104:195448..195601	1690879668.655284-CDS-C-linearis_contig104:195448..195601	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 195449..195601 -
1622927384.3042195-CDS-C-linearis_contig104:195819..196047	1622927384.3042195-CDS-C-linearis_contig104:195819..196047	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 195820..196047 -
1690879668.6636226-CDS-C-linearis_contig104:195819..196047	1690879668.6636226-CDS-C-linearis_contig104:195819..196047	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 195820..196047 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig104:193699..196047-
coding sequence from alignment at C-linearis_contig104:193699..196047-

protein sequence of mRNA_C-linearis_contig104.882.1

>prot_C-linearis_contig104.882.1 ID=prot_C-linearis_contig104.882.1|Name=mRNA_C-linearis_contig104.882.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=378bp
PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYLQHNRIQVIEELD
TLRSLEFLALGSNRIRRLENLRHLSKLQVLDLSDNMIEDVDTQELPHALV
IVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPM
EVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQVRQA
TRFCAEHGLHGDSARESLIDHMEEAIAGPVQAPESEETGTEGTTQERIDY
HDPPEVDERLHAILHLQKTRARVMQESTASFEHHKKTLLSATRKLVERKT
ASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERV
LAERRRETEAAAEGTGVIVSSPKKSLG*

mRNA from alignment at C-linearis_contig104:193699..196047-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig104.882.1 ID=mRNA_C-linearis_contig104.882.1|Name=mRNA_C-linearis_contig104.882.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2349bp|location=Sequence derived from alignment at C-linearis_contig104:193699..196047- (Chordaria linearis ClinC8C monoicous)
CCGTCTTGCAGGGCTTCAGATCTGCTCAGGGTGGAAGTACTTCGGCTCGA
TTGGCAACGAATACCAAGCATTCAGAATCTAGATATTTTTACGCGCCTAC
GAGAGCTATATCTCCAACACAACAGGATACAAGTGATCGAAGAGTTGGAT
ACGCTCAGAAGTCTGGAGTTTCTGGCTCTCGGCTCCAACCGCATCCGGCG
GCTGGAAAATCTACGCCATCTGAGCAAGGTGAGCCTCCTAAACTACCCGC
CTCTTAACTGCGGGAGCGGGACTTGCAACAGACAGTACGCCTTGCGACGC
TAAAGTTCCGGCACCGTGCCACGAGCCTCACAGAGCATCAAAACCCGCCA
CTCTTGATAGCAATACACCGTCGAGCAGAGGCTAGTATTCCGTTGGTGTG
TTGAAGCGAAAATATTTTTTTGCCTGTGTCGCTCTTCAATTTGCAGCTGC
AGGTGCTAGATCTGTCTGATAATATGATCGAAGACGTAGACACACAAGAG
CTGCCCCACGCTCTAGTAATTGTGAATATGGCCGGGAATCCGTGCTGCCG
TGAGCCTACTTTCCGACACAAGATAACTTGTGCTCTTCCAGATCTGAAGG
TGAGTTGATAAATACTCGCGGAGTTCGAACAGCCCTGTCCACCAGAGGAT
ATAGTCCACTGTCTACTTACCGCCTCACGGCAGGCACTGCTGCCATTCTT
GAAAGGCGTAAAGGAAAATACGGTCTTGTCAACCTCGAGCCGCAGCAACC
AATTACTGCAGTATATAGGTAGTCGGCGATGTTTCGCTTTTGTTCTCCTA
TAGCTAATGGCATTCACTTTCCTACCTTATCGCATGCGGTGGTACACGAC
TTAGACGAGTTGTGCTCTCTCAGCAAACTGAGCAAGCTGAAGGCGGCGCA
TGTTGGCTGTACATTCTAGTCGTTTAGGTATATACGAAGTACGCTTTCAA
CTTTCCTCTGTTTCGGTAGGTCCTGGATGGGGAGCAGGTGGGGGTAATGC
CCCAGCTGGCCGGAGTGGAAGAATGCAAAGGCCCGATGGAAGTTAGCGCT
CTTTCCCCCCGCAACGACCAACTGGGCGACAAGCGCGACCAGACGATCCT
CTACGTGACAGTGCAGTCGGGGGGCGAGTCCAAAATTGTTCCTTTCCGCT
TCTCTCAAGCGGGAAAAATGACGCAGGTGAGGGTGCGCTATCGACCGCAC
AATGCGGCAGTCGTTTGCCCTTGCCGGTGAGATGTTGGAACTAGGTGTAG
TATCCCACACTCATTGACCACCATCCAATGCACTTCGTACGTACTTTTTT
TGTGGTTGTTTTCGAACCACAGCAAGCTACGCGCTTTTGCGCCGAACACG
GCTTACACGGCGATAGCGCCAGAGAATCCCTAATCGATCACATGGAGGAG
GCCATCGCAGGGCCTGTTCAAGCGCCGGAGAGCGAAGAAACCGGCACCGA
GGGCACAACCCAGGAGAGGATCGATTACCATGACCCCCCAGAAGTTGATG
AACGACTTCACGCGATACTTCACCTTCAGAAAACGCGGGCTCGCGTGATG
CAGGAGTCGACGGCTTCTTTTGAGCACGTGCGTGCGCGGTTTGTCCATGG
CATTTATTTCTCAATGAAGCTGAAATTCTGGCCACCTTATCGAGTAACAG
GTATTCAATCCCTTGACTTCAGCTTCTCCGGCAAGGCTACCGAACGTTGC
CTATTGATCCTGTAACGACGTTGTAATCTTCTGGCTGACAAACGCAGTTT
GTTTTGCGCTCCCTTTCTGTGTGAATGGTTTTCGCCATGCAGCACAAGAA
AACCCTCCTGTCTGCTACCCGGAAGCTGGTAGAGCGGAAGACTGCGTCAG
CCCACTGCCGCTCCGATGCCCTGGAGGAAGACATCGACAAGGTGAGCGTC
TGGTACTGTAGCATAGAGCTGAGAAAGTGGTCTGGCTTTTGACAGAAGCT
CCTGCTATCGTTTCGCCTTGCGCCATCATCAGCCAGGCAGATGCGGTTGT
TCTGCCGATCGAACTTATGTCTGCCGATTGTTAACTCATTCATTGTTTGA
TTTGAACAAAATCGAGATGTTGATCTAATCCCTGAGGTGCAATTGTAAAT
GTCCTAGGTAGAGGCTGTTAGTGAACTAACCGTGATCGTCGTACCTACAC
GCAATTGTTCCAGATTCTGAAAGAGGCCCGCGCGGAACTGCAACTCCGTC
GAGAGAGAATGTCCACAGAAAACAGGCAGTTCGCTACGGACACTAGGGAG
AAGATCGAGCGGGTGCTGGCTGAACGGCGACGAGAAACAGAAGCGGCGGC
GGAAGGGACAGGAGTTATCGTTTCCTCGCCGAAAAAAAGCTTGGGATAG

Coding sequence (CDS) from alignment at C-linearis_contig104:193699..196047-

>mRNA_C-linearis_contig104.882.1 ID=mRNA_C-linearis_contig104.882.1|Name=mRNA_C-linearis_contig104.882.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at C-linearis_contig104:193699..196047- (Chordaria linearis ClinC8C monoicous)
CCGTCTTGCAGGGCTTCAGATCTGCTCAGGGTGGAAGTACTTCGGCTCGA
TTGGCAACGAATACCAAGCATTCAGAATCTAGATATTTTTACGCGCCTAC
GAGAGCTATATCTCCAACACAACAGGATACAAGTGATCGAAGAGTTGGAT
ACGCTCAGAAGTCTGGAGTTTCTGGCTCTCGGCTCCAACCGCATCCGGCG
GCTGGAAAATCTACGCCATCTGAGCAAGCCGTCTTGCAGGGCTTCAGATC
TGCTCAGGGTGGAAGTACTTCGGCTCGATTGGCAACGAATACCAAGCATT
CAGAATCTAGATATTTTTACGCGCCTACGAGAGCTATATCTCCAACACAA
CAGGATACAAGTGATCGAAGAGTTGGATACGCTCAGAAGTCTGGAGTTTC
TGGCTCTCGGCTCCAACCGCATCCGGCGGCTGGAAAATCTACGCCATCTG
AGCAAGCTGCAGGTGCTAGATCTGTCTGATAATATGATCGAAGACGTAGA
CACACAAGAGCTGCCCCACGCTCTAGTAATTGTGAATATGGCCGGGAATC
CGTGCTGCCGTGAGCCTACTTTCCGACACAAGATAACTTGTGCTCTTCCA
GATCTGAAGCTGCAGGTGCTAGATCTGTCTGATAATATGATCGAAGACGT
AGACACACAAGAGCTGCCCCACGCTCTAGTAATTGTGAATATGGCCGGGA
ATCCGTGCTGCCGTGAGCCTACTTTCCGACACAAGATAACTTGTGCTCTT
CCAGATCTGAAGGTCCTGGATGGGGAGCAGGTGGGGGTAATGCCCCAGCT
GGCCGGAGTGGAAGAATGCAAAGGCCCGATGGAAGTTAGCGCTCTTTCCC
CCCGCAACGACCAACTGGGCGACAAGCGCGACCAGACGATCCTCTACGTG
ACAGTGCAGTCGGGGGGCGAGTCCAAAATTGTTCCTTTCCGCTTCTCTCA
AGCGGGAAAAATGACGCAGGTGAGGGTCCTGGATGGGGAGCAGGTGGGGG
TAATGCCCCAGCTGGCCGGAGTGGAAGAATGCAAAGGCCCGATGGAAGTT
AGCGCTCTTTCCCCCCGCAACGACCAACTGGGCGACAAGCGCGACCAGAC
GATCCTCTACGTGACAGTGCAGTCGGGGGGCGAGTCCAAAATTGTTCCTT
TCCGCTTCTCTCAAGCGGGAAAAATGACGCAGGTGAGGCAAGCTACGCGC
TTTTGCGCCGAACACGGCTTACACGGCGATAGCGCCAGAGAATCCCTAAT
CGATCACATGGAGGAGGCCATCGCAGGGCCTGTTCAAGCGCCGGAGAGCG
AAGAAACCGGCACCGAGGGCACAACCCAGGAGAGGATCGATTACCATGAC
CCCCCAGAAGTTGATGAACGACTTCACGCGATACTTCACCTTCAGAAAAC
GCGGGCTCGCGTGATGCAGGAGTCGACGGCTTCTTTTGAGCACCAAGCTA
CGCGCTTTTGCGCCGAACACGGCTTACACGGCGATAGCGCCAGAGAATCC
CTAATCGATCACATGGAGGAGGCCATCGCAGGGCCTGTTCAAGCGCCGGA
GAGCGAAGAAACCGGCACCGAGGGCACAACCCAGGAGAGGATCGATTACC
ATGACCCCCCAGAAGTTGATGAACGACTTCACGCGATACTTCACCTTCAG
AAAACGCGGGCTCGCGTGATGCAGGAGTCGACGGCTTCTTTTGAGCACCA
CAAGAAAACCCTCCTGTCTGCTACCCGGAAGCTGGTAGAGCGGAAGACTG
CGTCAGCCCACTGCCGCTCCGATGCCCTGGAGGAAGACATCGACAAGCAC
AAGAAAACCCTCCTGTCTGCTACCCGGAAGCTGGTAGAGCGGAAGACTGC
GTCAGCCCACTGCCGCTCCGATGCCCTGGAGGAAGACATCGACAAGATTC
TGAAAGAGGCCCGCGCGGAACTGCAACTCCGTCGAGAGAGAATGTCCACA
GAAAACAGGCAGTTCGCTACGGACACTAGGGAGAAGATCGAGCGGGTGCT
GGCTGAACGGCGACGAGAAACAGAAGCGGCGGCGGAAGGGACAGGAGTTA
TCGTTTCCTCGCCGAAAAAAAGCTTGGGATAGATTCTGAAAGAGGCCCGC
GCGGAACTGCAACTCCGTCGAGAGAGAATGTCCACAGAAAACAGGCAGTT
CGCTACGGACACTAGGGAGAAGATCGAGCGGGTGCTGGCTGAACGGCGAC
GAGAAACAGAAGCGGCGGCGGAAGGGACAGGAGTTATCGTTTCCTCGCCG
AAAAAAAGCTTGGGATAG