mRNA_C-linearis_contig104.873.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig104.873.1
Unique Name	mRNA_C-linearis_contig104.873.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.430e-10
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1

Query:   19 NGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGD 120
            +GLTG DCCQ +I ASGRLCSVTREAPC+MD GD
Sbjct:   41 SGLTGEDCCQNRITASGRLCSVTREAPCYMDGGD 74

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BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 6.120e-8
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1

Query:   22 GLTGFDCCQGKIVASGRLCSVTREAPCFMD 111
            GLTG DCCQ +I ASGRLCSVT+EAPC+MD
Sbjct:  809 GLTGEDCCQNRITASGRLCSVTQEAPCYMD 838

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BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.140e-7
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1

Query:    1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGDEDSPTPTP 144
            GCSNRG GLTG DCC   I   G LCSV  +APCF+D G+  + +P P
Sbjct:   96 GCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVD-GEVGTSSPEP 142

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BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: A0A6H5JIY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.220e-7
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1

Query:    1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMD 111
            GCSNRG GL G DCCQ  I  +G +CSVT +APC +D
Sbjct:  189 GCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 225

[Close]

BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 7.370e-7
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1

Query:    1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMD 111
            GCSNRG GL G DCCQ  I  +G +CSVT +APC +D
Sbjct:  655 GCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691

[Close]

BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 3.170e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1

Query:    1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGDEDSPTP 138
            GCS+RG+GLTG DCC   I+A+G+ C     APC ++ G   SPTP
Sbjct:   42 GCSDRGDGLTGADCCTSDILAAGKACG---SAPCLLEEGS--SPTP 82

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot

BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JEN4_9PHAE	5.430e-10	79.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LL13_ECTSI	6.120e-8	80.00	Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili...	[more]
D7FRL2_ECTSI	1.140e-7	56.25	Endo alpha-1,4 polygalactosaminidase precusor n=1 ...	[more]
A0A6H5JIY0_9PHAE	3.220e-7	62.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LJ42_ECTSI	7.370e-7	62.16	FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2...	[more]
D7FWE8_ECTSI	3.170e-5	52.17	Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig104	contig	C-linearis_contig104:114608..115353 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	233
Cds size	231
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927382.9450443-CDS-C-linearis_contig104:114607..114720	1622927382.9450443-CDS-C-linearis_contig104:114607..114720	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 114608..114720 -
1690879667.7173264-CDS-C-linearis_contig104:114607..114720	1690879667.7173264-CDS-C-linearis_contig104:114607..114720	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 114608..114720 -
1622927382.958118-CDS-C-linearis_contig104:115235..115353	1622927382.958118-CDS-C-linearis_contig104:115235..115353	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 115236..115353 -
1690879667.729036-CDS-C-linearis_contig104:115235..115353	1690879667.729036-CDS-C-linearis_contig104:115235..115353	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 115236..115353 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig104.873.1	prot_C-linearis_contig104.873.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig104 114608..115353 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig104:114608..115353-
coding sequence from alignment at C-linearis_contig104:114608..115353-

protein sequence of mRNA_C-linearis_contig104.873.1

>prot_C-linearis_contig104.873.1 ID=prot_C-linearis_contig104.873.1|Name=mRNA_C-linearis_contig104.873.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=77bp
GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGDEDSPTPTPPT
PSPVTPTTPTPPTPPPSLPPSPSPPSP

mRNA from alignment at C-linearis_contig104:114608..115353-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig104.873.1 ID=mRNA_C-linearis_contig104.873.1|Name=mRNA_C-linearis_contig104.873.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=746bp|location=Sequence derived from alignment at C-linearis_contig104:114608..115353- (Chordaria linearis ClinC8C monoicous)
GGATGTTCCAACCGAGGGAATGGCCTCACCGGCTTCGATTGCTGCCAGGG
TAAAATCGTTGCTTCCGGCCGTCTCTGCTCGGTCACTCGCGAAGCCCCGT
GCTTTATGGACACTGGCGGTGAGCACACACTTCCAAAGACCCCCTTAACA
GACAGTTACATTTGTTTTGGGGGGGTGGGTTTTCCACGTCGAGGCTTCGT
GTGCGTGTTCGTCTAATTTACTCTCATCACGTGCCATGTTTCTCGGGCGT
TCTTTTTTCCGCGCAAAGTGGGGGGGTTGTGCCGCAGCAACGCTGGCACG
CCTTTTTTGGGCGATGGCTTGATGGGAACCCGTTGACCCTGGCGGCGTAA
CCTGTGTGAACTTTTCATTGGATTCGTAAGGAGCCATATCCGCCCGCTAT
TCGAGCGACAAAGTCACGTTCTCCGTACAGCTCGCCGTCCGGAACGTGTT
CGTACCACGCACAAACAACGGATATCGGTACATATCCATGCCCAAAGATA
TTCCTCGTTGAAAAATAAAGTTCCAAGTGCTGTGAGAACATGACGCTGTT
TCGACCTTAAACTCACTCTTTCGATACCGTTGATGTCTTCCCCGTTGTTT
CGCCCCCCCTTCCGCATCGCCCGTCCGACGCAGATGAGGATTCGCCAACA
CCAACACCCCCTACACCTTCCCCGGTGACGCCTACAACACCTACACCGCC
GACACCGCCGCCGTCACTGCCTCCGTCTCCATCTCCCCCTTCCCCC

Coding sequence (CDS) from alignment at C-linearis_contig104:114608..115353-

>mRNA_C-linearis_contig104.873.1 ID=mRNA_C-linearis_contig104.873.1|Name=mRNA_C-linearis_contig104.873.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at C-linearis_contig104:114608..115353- (Chordaria linearis ClinC8C monoicous)
GGATGTTCCAACCGAGGGAATGGCCTCACCGGCTTCGATTGCTGCCAGGG
TAAAATCGTTGCTTCCGGCCGTCTCTGCTCGGTCACTCGCGAAGCCCCGT
GCTTTATGGACACTGGCGGGATGTTCCAACCGAGGGAATGGCCTCACCGG
CTTCGATTGCTGCCAGGGTAAAATCGTTGCTTCCGGCCGTCTCTGCTCGG
TCACTCGCGAAGCCCCGTGCTTTATGGACACTGGCGATGAGGATTCGCCA
ACACCAACACCCCCTACACCTTCCCCGGTGACGCCTACAACACCTACACC
GCCGACACCGCCGCCGTCACTGCCTCCGTCTCCATCTCCCCCTTCCCCCA
TGAGGATTCGCCAACACCAACACCCCCTACACCTTCCCCGGTGACGCCTA
CAACACCTACACCGCCGACACCGCCGCCGTCACTGCCTCCGTCTCCATCT
CCCCCTTCCCCC