mRNA_C-linearis_contig104.873.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 5.430e-10 Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 Query: 19 NGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGD 120
+GLTG DCCQ +I ASGRLCSVTREAPC+MD GD
Sbjct: 41 SGLTGEDCCQNRITASGRLCSVTREAPCYMDGGD 74
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 6.120e-8 Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 Query: 22 GLTGFDCCQGKIVASGRLCSVTREAPCFMD 111
GLTG DCCQ +I ASGRLCSVT+EAPC+MD
Sbjct: 809 GLTGEDCCQNRITASGRLCSVTQEAPCYMD 838
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 1.140e-7 Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1 Query: 1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGDEDSPTPTP 144
GCSNRG GLTG DCC I G LCSV +APCF+D G+ + +P P
Sbjct: 96 GCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVD-GEVGTSSPEP 142
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: A0A6H5JIY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY0_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 3.220e-7 Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 Query: 1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMD 111
GCSNRG GL G DCCQ I +G +CSVT +APC +D
Sbjct: 189 GCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 225
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI) HSP 1 Score: 54.7 bits (130), Expect = 7.370e-7 Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 Query: 1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMD 111
GCSNRG GL G DCCQ I +G +CSVT +APC +D
Sbjct: 655 GCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 50.1 bits (118), Expect = 3.170e-5 Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 Query: 1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGDEDSPTP 138
GCS+RG+GLTG DCC I+A+G+ C APC ++ G SPTP
Sbjct: 42 GCSDRGDGLTGADCCTSDILAAGKACG---SAPCLLEEGS--SPTP 82 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.873.1 >prot_C-linearis_contig104.873.1 ID=prot_C-linearis_contig104.873.1|Name=mRNA_C-linearis_contig104.873.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=77bp GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGDEDSPTPTPPTback to top mRNA from alignment at C-linearis_contig104:114608..115353- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.873.1 ID=mRNA_C-linearis_contig104.873.1|Name=mRNA_C-linearis_contig104.873.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=746bp|location=Sequence derived from alignment at C-linearis_contig104:114608..115353- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:114608..115353- >mRNA_C-linearis_contig104.873.1 ID=mRNA_C-linearis_contig104.873.1|Name=mRNA_C-linearis_contig104.873.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at C-linearis_contig104:114608..115353- (Chordaria linearis ClinC8C monoicous)back to top |