mRNA_C-linearis_contig104.868.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A6H5JAJ0_9PHAE (OHCU_decarbox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAJ0_9PHAE) HSP 1 Score: 295 bits (754), Expect = 5.030e-93 Identity = 145/171 (84.80%), Postives = 160/171 (93.57%), Query Frame = 3 Query: 39 MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLLEEIAPP 551
M+AL+ +PR LR+ELLRCCH + WADAVLGRMPFKSE+EA+AA+DDCWAKL+PADYLEAVAAHPAIGDKQALRDKFAPSRSGWED EQAAAAGASEAV +ELS+LN EYR+KNGFVFLVCASG+PADAILALLKARLPNDRDTEI+NAVEEQR ITQLRF RLL EI+PP
Sbjct: 1 MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEAQAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEEYRQKNGFVFLVCASGMPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLLMEISPP 171
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A2W4HVW3_9BACT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A2W4HVW3_9BACT) HSP 1 Score: 137 bits (345), Expect = 6.560e-34 Identity = 75/166 (45.18%), Postives = 103/166 (62.05%), Query Frame = 3 Query: 39 MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIG-DKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLL 533
++ L E+L RCC W + +L R PF+S E +A DD W KL P D+LEA A HP IG D +ALR KFA S + W ++EQ + A+E V LSKLN EY +K G++F+VCA+G A +L +LK+RL ND+D E+K A EQ IT++R +L+
Sbjct: 9 LETLNAKSASEAAEDLERCCGSRVWVEKMLSRRPFQSVDELFSAADDIWFKLAPEDWLEAFAHHPRIGGDVEALRAKFA-STASWAENEQKGVSQATEDVLHALSKLNDEYFEKYGYIFIVCATGKSARQMLDILKSRLLNDKDNELKVAAGEQAKITKIRLEKLI 173
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: UPI00199ADACE (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI00199ADACE) HSP 1 Score: 135 bits (341), Expect = 2.020e-33 Identity = 75/166 (45.18%), Postives = 99/166 (59.64%), Query Frame = 3 Query: 39 MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLLE 536
++AL + P RE L RCC S W D +L PF ++ A D WA +D+LEA +P IGD+ + R KFA S + W EQ+ A+ A+EAV LS N Y K GF+F+VCA+G AD +LALL+ARLPNDR TE++ A EQ IT LR + L+
Sbjct: 4 VEALTGLTEPAWREMLTRCCGASHWVDGMLVLRPFSTDTALMKAADQVWAGTGESDWLEAFTHYPKIGDRDSRRQKFA-STAEWASHEQSGASAANEAVLTALSDGNLNYEAKFGFIFIVCATGKSADEMLALLQARLPNDRATELQIAAGEQHKITLLRLEKWLQ 168
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A6L3EM52_9PROT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L3EM52_9PROT) HSP 1 Score: 135 bits (340), Expect = 2.610e-33 Identity = 71/165 (43.03%), Postives = 98/165 (59.39%), Query Frame = 3 Query: 39 MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLL 533
+D+ R+P ++R L CC + W D +L R PF+ + A D W +++ D+LEA AAHP IGD +LR+K+A +R EQAA GA E+ +LN EY + GF+F+V ASG A +L LLKAR+ N RD E++NA EQ IT LR RL+
Sbjct: 3 VDSFNRLPEHQVRARLTDCCAAARWVDLMLARRPFRDAGDVARAARDAWMQMSTRDWLEAFAAHPRIGDIDSLREKYASTRE-MAGGEQAAVGGADVDTLREIGRLNREYENRFGFIFIVFASGKSAVEMLELLKARIDNTRDQELRNAAAEQLKITLLRLDRLV 166
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A836Q8N7_9BACT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A836Q8N7_9BACT) HSP 1 Score: 134 bits (338), Expect = 6.060e-33 Identity = 71/153 (46.41%), Postives = 100/153 (65.36%), Query Frame = 3 Query: 78 EELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIG-DKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLL 533
E+L RCC W + +L R PF S E +A DD W KL D+LEA A HP IG D +ALR KFA S + W ++EQ + A+E V +L+KLN +Y +K G++F+VCA+G A+ +L +LK RLPND++ E+K A EQ IT++R +L+
Sbjct: 22 EDLERCCGSHAWVEKMLTRRPFHSVDELFSAADDIWFKLAAEDWLEAFAHHPRIGGDVEALRAKFA-STASWAENEQRGVSQATEDVLHQLAKLNDDYFEKYGYIFIVCATGKSAEEMLEILKGRLPNDKEKELKVAAGEQAKITKIRLEKLI 173
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A6L7U330_9CHLR (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=2 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A6L7U330_9CHLR) HSP 1 Score: 133 bits (334), Expect = 2.220e-32 Identity = 73/170 (42.94%), Postives = 102/170 (60.00%), Query Frame = 3 Query: 36 AMDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLLEEIA 545
A AL R+P R E L RCC W +++ R+PF + R+ D+ W L D+LEA A HP IGD +LR +FA +R+ W + EQ+ GASE V L+ N Y ++ G++F+VCA+G A+A+L LL+ RL N D E+ A E+QR I QLR +L EE+A
Sbjct: 5 ATVALNRLPAARQAELLERCCGSERWVQSMVQRIPFADWQALRSEADEIWLGLDRDDWLEAFAHHPRIGDIDSLRARFATTRN-WSEGEQSGVDGASEEVLAGLAAGNRRYEQRFGYIFIVCATGKSAEAMLELLQERLGNSPDDELPIAAEQQRQIMQLRLDKLREELA 173
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A848LKZ2_9DELT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=3 Tax=Pyxidicoccus TaxID=224458 RepID=A0A848LKZ2_9DELT) HSP 1 Score: 132 bits (331), Expect = 4.810e-32 Identity = 71/165 (43.03%), Postives = 95/165 (57.58%), Query Frame = 3 Query: 39 MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLL 533
++ L +M R ELLRCC S WAD ++ PF+ + A W + P D+ EA+ HP IGD LR KFA S + W EQ GA EAV + L+ N EY ++ GF+FLVCA+G A +LALL+ RL N D E++ A EEQ IT++R +LL
Sbjct: 4 LERLNKMMSSEARAELLRCCGSSRWADGMVRSRPFRDAEHLLAEAAWLWKQTGPEDWREAITHHPRIGDVSQLRAKFA-STATWSSQEQGGVVGADEAVLQGLADGNAEYERRFGFIFLVCATGKSAAEMLALLRERLDNSPDEELRIAAEEQAKITRIRLEKLL 167
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A4Q5NTB6_9BACT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q5NTB6_9BACT) HSP 1 Score: 132 bits (331), Expect = 5.260e-32 Identity = 69/153 (45.10%), Postives = 99/153 (64.71%), Query Frame = 3 Query: 78 EELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLLE 536
+ELLRCC S+W V+ PF + + ++ KL D+LEA A HP IGD +LR KFA + S W +EQA ASEA + L++ N +Y K GF+F++CA+G AD +LA+L+ RL ND++TE++NA E+Q+ IT+LR +LLE
Sbjct: 20 DELLRCCGASKWVLIVMNGRPFANVETLYTRSEEALNKLDHTDWLEAFAHHPKIGDIDSLRSKFATT-STWAGNEQAGTNAASEATLQALAQGNTDYEDKFGFIFIICATGKSADEMLAVLQTRLNNDKETELQNAAEQQKQITRLRLGKLLE 171
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: UPI00098774F1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Pseudocolwellia agarivorans TaxID=1911682 RepID=UPI00098774F1) HSP 1 Score: 132 bits (331), Expect = 6.440e-32 Identity = 68/169 (40.24%), Postives = 103/169 (60.95%), Query Frame = 3 Query: 36 AMDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLLEEI 542
A+D L +P ++CC S+W + +L +P + + ++ W LT DYLEA HP IGD +LR K+A +++ EQ+A A+E V +L+K N +Y +K GF+F+VCA+G A+ +L LL+ RLPN+R TE+ NAVEEQR I Q+R ++LE +
Sbjct: 6 AIDTLNALPENDALHVFMQCCTSSKWVERMLNSLPVADKAQLVNLANEHWKNLTEKDYLEAFEGHPKIGDVNSLRAKYANTKA-LASGEQSAVDNANETVLTQLAKGNDDYLQKFGFIFIVCATGKSAEEMLTLLQQRLPNNRQTELVNAVEEQRKIFQIRIDKMLEHL 173
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A7S3XGY5_OXYMA (Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XGY5_OXYMA) HSP 1 Score: 129 bits (325), Expect = 2.320e-31 Identity = 64/152 (42.11%), Postives = 92/152 (60.53%), Query Frame = 3 Query: 75 REELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRL 530
R++ L CH S+WA ++ R PF+ + + W L D+LEA HP IGD ++LR K+ + EQ+ +GASE V + L+K N +Y +KNGF+F+VCASG A +L +L++RLPN RD E++NA EQ IT LR +L
Sbjct: 1 RDKFLETCHSSKWAAGMVARRPFEDDAALLKGAQEVWDSLGEEDWLEAFRGHPKIGDAESLRKKYHGNSGALSSVEQSGVSGASEEVIQALAKGNQDYEEKNGFIFIVCASGKSASEMLEILQSRLPNGRDQELQNAAAEQAKITALRLQKL 152 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.868.1 >prot_C-linearis_contig104.868.1 ID=prot_C-linearis_contig104.868.1|Name=mRNA_C-linearis_contig104.868.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=202bp MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAback to top mRNA from alignment at C-linearis_contig104:73491..78385+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.868.1 ID=mRNA_C-linearis_contig104.868.1|Name=mRNA_C-linearis_contig104.868.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4895bp|location=Sequence derived from alignment at C-linearis_contig104:73491..78385+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:73491..78385+ >mRNA_C-linearis_contig104.868.1 ID=mRNA_C-linearis_contig104.868.1|Name=mRNA_C-linearis_contig104.868.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at C-linearis_contig104:73491..78385+ (Chordaria linearis ClinC8C monoicous)back to top |