mRNA_C-linearis_contig103.842.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Match: A0A6H5JI88_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI88_9PHAE) HSP 1 Score: 815 bits (2105), Expect = 1.560e-275 Identity = 631/949 (66.49%), Postives = 694/949 (73.13%), Query Frame = 3 Query: 744 LGVHHRPHGSFPSRSISPQLPPPPPKPAHERLWDGVQGPLWRFRSSSRTPVILAPPSAVLEAARVGGGAGPCRDGEPRSRPGSEETRRSSLMGLGPIDAVLVLDEHLSLPSPSTTXXXXXXXXXXXXXXXXXXXXXXXXYSRAALSSALKSLLALPLLARGESPVVGP----ARGSGXXXXXXXXXXXXXXXXXXXXXXXXIVTVVRFLAEGTVEEALE-EGGAGASMGSLEGRPLGEVIFGPSFAKQKGTPVLPATPT---------PAAXXXXXXXXXXXXXXXXXDTKATGNKKGEEAEKAASLDVVGAEASGAAAAEAALARARCAVEGKKFAVRREAKD----EASAAVPPVAGTKRKALASRDGDA-GGPGAHWSESLPPLRRMRMSARSPVGVEEILMEEIVQMDPNDFDTGRGSFDTDETRVFARLAQEGHPIPPPLLSYAVDATLAATPGHSFTERVRDLHLLGIAPDPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQELGCSLSYVDRLMVPPNRNKKLKKAMSPRESSRRDGERSGSGR-TKASVEEWTKTEDRLLVGAVQQFGENWVLVAFSINKYPILRGRMRCGSQCKARYSNLVALGTAQRLPRTGAARPLSVRLREDYRGAAILPDQPPALTLQMRSRVPLVPIAGAAARQAFSARFTALVKAVQKKPAPPPIPGCDNPEAQIQPPHNSHAKAAEDAGAAGALAPTQITDRLRAALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGHGIQPQAPLPAVP---PAQQXXXXXXXXXXXXXXXXX---------VSAGGVPAGTVPTSPAQSLAANLSSQVRALLSRAPSTAGGSSGSTNQVLEALRLHPQLTSKIQATIHRTDTTDAQKVEALAAMLSAVR 3494
L HH P GSFPSRS SPQ P PPKPAHERLW GVQGPLWRFR S RTPV+LAPPSA+LEA V GG+G C +GE + RP R+ SL GLGPIDAVL+ DE + + TXXXXXXXX AAL++AL+SLL LPL AR S A G G +VTVVR++ +GT+EE LE EG G S SL GRPLGEV+FGP+++ + + A T PAAXXXXXXXXXXXXXXXXX A+GA +A RC++EGK + + EA E + AV ++GTKRKA D G G HWSE PPLRR SPV VE+IL+EE+VQM+P+DFDT RG FDTDETRVFARLA+ GHP+PPPLLSYAVDATLAATPG SFTERVRDLHLLGI+P+PFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQ+LGCSLSYVDRL P NR+KKLKKA+SPRESSRR+GE G+GR K SVEEWTK ED LLV AVQQFGENWVLVAFSINK PILRGRMR GSQCKAR++NLVALG A + + GA RPLSVRL YRG AILPDQP ALT+ MRSRVPLVP+AGAAARQAF+ARF ALVKAV+KKP PPPIPGCDNPEA IQP HNSHAKAAE+AGAAGALAPTQITDR RAAL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGHGIQPQAPLP P QQ XXXXXXXXXXXX ++AGGV AG PTSPAQ+LAANLSSQVRALLSRAP+ G + GSTNQVLEALRLHPQLT+KIQATIHRTDTTDAQKVEALA+MLSAVR
Sbjct: 75 LSAHHNPLGSFPSRSPSPQAPATPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEA--VAGGSGLCPNGE-QPRPDGSSVRKGSLCGLGPIDAVLIFDEGPPITRATATXXXXXXXX-------------------AALAAALQSLLTLPLCARRSSAPRAIRSMLATGGGAADENGRVDRGGVATAAGRAEGERVVTVVRYVVDGTIEETLEGEGDKGIS--SLGGRPLGEVLFGPTYSDRGSAKPVSAGATSEAASAPEIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPPAAGAEVGVEGIA-VRCSLEGKTYLKQGEAASASASEGTEAVS-LSGTKRKAGGGGGADMLGADGKHWSEGAPPLRRT--CPWSPVRVEDILVEEMVQMNPDDFDTERGCFDTDETRVFARLAEGGHPVPPPLLSYAVDATLAATPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDRL--PSNRSKKLKKALSPRESSRREGEHPGAGRRNKTSVEEWTKMEDSLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQCKARHANLVALGAAGQRSQRGA-RPLSVRLPPTYRGTAILPDQPAALTMAMRSRVPLVPVAGAAARQAFAARFAALVKAVKKKPIPPPIPGCDNPEALIQPAHNSHAKAAEEAGAAGALAPTQITDRQRAALIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------AGHGIQPQAPLPVSAGQQPLQQGGSVGXXXXXXXXXXXXXXXAPAGVALAAGGV-AGAAPTSPAQNLAANLSSQVRALLSRAPNMPGAAGGSTNQVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVR 984
BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI) HSP 1 Score: 715 bits (1845), Expect = 4.330e-225 Identity = 540/972 (55.56%), Postives = 598/972 (61.52%), Query Frame = 3 Query: 39 RCGMTGPQAEVYSAVASSPEIVAALSGAA---PPEXXXXXXXXXAASNGSAASKAVMSGXXXXXXXXLLALRRAALTGALEKTPPP--------------------GSTVTAGQAEARKEEFWRGHVKDLELTASDRLEKYSGKLVELGRAVGRLAAAGKKVVVLGALPDALALVHQYLTETDVPHECWAAHEEMFPP----------DDGTTVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKAEAKAEAEAKSNGTMASLLGVHHRPHGSFPSRSISPQLPPPPPKPAHERLWDGVQGPLWRFRSSSRTPVILAPPSAVLEAARVGGGAGPCRDGEPRSRPGSEETRRSSLMGLGPIDAVLVLDEHLSLPSPSTTXXXXXXXXXXXXXXXXXXXXXXXXYSRAALSSALKSLLALPLLARGESPVVG----PARGSGXXXXXXXXXXXXXXXXXXXXXXXX-IVTVVRFLAEGTVEEALE-EGGAGASMGSLEGRPLGEVIFGPSFAKQKGTPVLPATPTPAAXXXXXXXXXXXXXXXXXDTKATGNKKGEEAEKAASLDVVGAEASGAAAAEAALARARCAVEGKKFAVRREAKD----EASAAVPPVAGTKRKALASRDGDA-------GGPGAHWSESLPPLRRMRMSARSPVGVEEILMEEIVQMDPNDFDTGRGSFDTDETRVFARLAQEGHPIPPPLLSYAVDATLAATPGHSFTERVRDLHLLGIAPDPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQELGCSLSYVDRLMVPPNRNKKLKKAMSPRESSRRDGERSGSGR-TKASVEEWTKTEDRLLVGAVQQFGENWVLVAFSINKYPILRGRMRCGSQCKARYSNLVALGTA-QRLPRTGAARPLSVRLREDYRGAAILPDQPPALTLQMRSRVPLVPIAGAAARQAFSARFTALVKAVQKKPAPPPIPGCDNPEAQ 2798
RC MT PQA+VYSAVA S E+VAALSG PP ASNG + XXXXXXXX G+ ++AGQAEA+KEEFWRGHVKDLEL+ +RLEKYSGKL +LGRAV RLAAAGKKV+VLGALPDA LVHQYL ETDVPHECWA + EMFP D GT PAXXXXXXXXXXXXXXXXXXXXXXXXXXX A + +A L HH P GSFPSRS PQ P PPKPAHERLW GVQGPLWRFR S RTPV+LAPPSA+LEA V GG+G C +GE + RP RR SL+GLGPIDAVL+ DE + + +T XXXXXXXXXX +SRAAL++AL+SLL LP AR S PA G G XXXXXXXXXXXX +VTVVR++A GT+EE LE EG G S G + RC++EGK F + EA E + AV ++GTKRKA G G HWSE PPLRR SPVGVE+IL+EE+VQM+P+DFDTGRG FDTDETRVFARLA GHP+PPPLLSYAVDATLA TPG SFTERVRDLHLLGI+P+PFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQ+L CSLSYVDRL P NRNKKLKKA+SPRESSRR+GE+ G+GR K SVEEWTK ED LLV AVQQFGENWVLVAFSINK PILRGRMR GSQ KAR++NLVALG A QR PR ARP SVRL Y +PLVP+AGAAARQAFSARF ALVKAV+KKP PPPIPGCDNPE +
Sbjct: 1213 RCAMTKPQAKVYSAVARSREVVAALSGEGTTIPPPAL--------ASNGLSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALLSAGQAEAQKEEFWRGHVKDLELSVPERLEKYSGKLAKLGRAVARLAAAGKKVLVLGALPDARLLVHQYLVETDVPHECWAGNGEMFPNVAEEESTRGVDAGTAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSVGPGVAAXXXXXXXSPALAPL-SAHHNPLGSFPSRSPFPQAPVTPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEA--VAGGSGLCPNGE-QPRPDGSSVRRGSLLGLGPIDAVLIFDEGPPITTRTTAXXXXXXXXXX--------------WSRAALAAALQSLLTLPRCARRSSAPRAIRSMPATGGGAAADENGRVDGXXXXXXXXXXXXESVVTVVRYVANGTIEETLEGEGDKGISSLGAGGEGIA--------------------------------------------------------------------------------VRCSLEGKTFLKQGEAASASASEGTEAVS-LSGTKRKAADGXXXXGCSGVDMLGANGKHWSEGAPPLRRT--CPWSPVGVEDILVEEMVQMNPDDFDTGRGCFDTDETRVFARLADGGHPVPPPLLSYAVDATLATTPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLSCSLSYVDRL--PSNRNKKLKKALSPRESSRREGEQPGAGRRNKTSVEEWTKMEDTLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQNKARHANLVALGAAGQRSPR--GARPKSVRLPPTY--------------------LPLVPVAGAAARQAFSARFAALVKAVKKKPIPPPIPGCDNPEVE 2051
BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 5.860e-7 Identity = 56/127 (44.09%), Postives = 70/127 (55.12%), Query Frame = 3 Query: 15 VVVEEFVIRCGMTGPQAEVYSAVASSPEIVAALSG---AAPPEXXXXXXXXXAASNGSAASKAVMSGXXXXXXXXLLALRRAALTGALEKTPPP-----------GSTVTAGQAEARKEEFWRGHVK 353
VVV+E+V+RC MT PQA+VYSAVA S E+VAALSG A PP A+ + + ++ + XXXXXXXX G+ ++AGQAEARKEEFWRGHVK
Sbjct: 979 VVVKEYVVRCAMTEPQAKVYSAVARSREVVAALSGEGAAIPPSAPASNGLTTPATTPTPTAASLSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALLSAGQAEARKEEFWRGHVK 1105 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.842.1 >prot_C-linearis_contig103.842.1 ID=prot_C-linearis_contig103.842.1|Name=mRNA_C-linearis_contig103.842.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1167bp MTGPQAEVYSAVASSPEIVAALSGAAPPEPKPEPEPEPAASNGSAASKAVback to top mRNA from alignment at C-linearis_contig103:385987..400074- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.842.1 ID=mRNA_C-linearis_contig103.842.1|Name=mRNA_C-linearis_contig103.842.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=14088bp|location=Sequence derived from alignment at C-linearis_contig103:385987..400074- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:385987..400074- >mRNA_C-linearis_contig103.842.1 ID=mRNA_C-linearis_contig103.842.1|Name=mRNA_C-linearis_contig103.842.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7002bp|location=Sequence derived from alignment at C-linearis_contig103:385987..400074- (Chordaria linearis ClinC8C monoicous)back to top |