mRNA_C-linearis_contig103.842.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Match: A0A6H5JI88_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI88_9PHAE)

HSP 1 Score: 815 bits (2105), Expect = 1.560e-275
Identity = 631/949 (66.49%), Postives = 694/949 (73.13%), Query Frame = 3

Query:  744 LGVHHRPHGSFPSRSISPQLPPPPPKPAHERLWDGVQGPLWRFRSSSRTPVILAPPSAVLEAARVGGGAGPCRDGEPRSRPGSEETRRSSLMGLGPIDAVLVLDEHLSLPSPSTTXXXXXXXXXXXXXXXXXXXXXXXXYSRAALSSALKSLLALPLLARGESPVVGP----ARGSGXXXXXXXXXXXXXXXXXXXXXXXXIVTVVRFLAEGTVEEALE-EGGAGASMGSLEGRPLGEVIFGPSFAKQKGTPVLPATPT---------PAAXXXXXXXXXXXXXXXXXDTKATGNKKGEEAEKAASLDVVGAEASGAAAAEAALARARCAVEGKKFAVRREAKD----EASAAVPPVAGTKRKALASRDGDA-GGPGAHWSESLPPLRRMRMSARSPVGVEEILMEEIVQMDPNDFDTGRGSFDTDETRVFARLAQEGHPIPPPLLSYAVDATLAATPGHSFTERVRDLHLLGIAPDPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQELGCSLSYVDRLMVPPNRNKKLKKAMSPRESSRRDGERSGSGR-TKASVEEWTKTEDRLLVGAVQQFGENWVLVAFSINKYPILRGRMRCGSQCKARYSNLVALGTAQRLPRTGAARPLSVRLREDYRGAAILPDQPPALTLQMRSRVPLVPIAGAAARQAFSARFTALVKAVQKKPAPPPIPGCDNPEAQIQPPHNSHAKAAEDAGAAGALAPTQITDRLRAALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGHGIQPQAPLPAVP---PAQQXXXXXXXXXXXXXXXXX---------VSAGGVPAGTVPTSPAQSLAANLSSQVRALLSRAPSTAGGSSGSTNQVLEALRLHPQLTSKIQATIHRTDTTDAQKVEALAAMLSAVR 3494
            L  HH P GSFPSRS SPQ P  PPKPAHERLW GVQGPLWRFR S RTPV+LAPPSA+LEA  V GG+G C +GE + RP     R+ SL GLGPIDAVL+ DE   +   + TXXXXXXXX                   AAL++AL+SLL LPL AR  S         A G G                        +VTVVR++ +GT+EE LE EG  G S  SL GRPLGEV+FGP+++ +     + A  T         PAAXXXXXXXXXXXXXXXXX                         A+GA      +A  RC++EGK +  + EA      E + AV  ++GTKRKA      D  G  G HWSE  PPLRR      SPV VE+IL+EE+VQM+P+DFDT RG FDTDETRVFARLA+ GHP+PPPLLSYAVDATLAATPG SFTERVRDLHLLGI+P+PFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQ+LGCSLSYVDRL  P NR+KKLKKA+SPRESSRR+GE  G+GR  K SVEEWTK ED LLV AVQQFGENWVLVAFSINK PILRGRMR GSQCKAR++NLVALG A +  + GA RPLSVRL   YRG AILPDQP ALT+ MRSRVPLVP+AGAAARQAF+ARF ALVKAV+KKP PPPIPGCDNPEA IQP HNSHAKAAE+AGAAGALAPTQITDR RAAL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       AGHGIQPQAPLP      P QQ     XXXXXXXXXXXX         ++AGGV AG  PTSPAQ+LAANLSSQVRALLSRAP+  G + GSTNQVLEALRLHPQLT+KIQATIHRTDTTDAQKVEALA+MLSAVR
Sbjct:   75 LSAHHNPLGSFPSRSPSPQAPATPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEA--VAGGSGLCPNGE-QPRPDGSSVRKGSLCGLGPIDAVLIFDEGPPITRATATXXXXXXXX-------------------AALAAALQSLLTLPLCARRSSAPRAIRSMLATGGGAADENGRVDRGGVATAAGRAEGERVVTVVRYVVDGTIEETLEGEGDKGIS--SLGGRPLGEVLFGPTYSDRGSAKPVSAGATSEAASAPEIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPPAAGAEVGVEGIA-VRCSLEGKTYLKQGEAASASASEGTEAVS-LSGTKRKAGGGGGADMLGADGKHWSEGAPPLRRT--CPWSPVRVEDILVEEMVQMNPDDFDTERGCFDTDETRVFARLAEGGHPVPPPLLSYAVDATLAATPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDRL--PSNRSKKLKKALSPRESSRREGEHPGAGRRNKTSVEEWTKMEDSLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQCKARHANLVALGAAGQRSQRGA-RPLSVRLPPTYRGTAILPDQPAALTMAMRSRVPLVPVAGAAARQAFAARFAALVKAVKKKPIPPPIPGCDNPEALIQPAHNSHAKAAEEAGAAGALAPTQITDRQRAALIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------AGHGIQPQAPLPVSAGQQPLQQGGSVGXXXXXXXXXXXXXXXAPAGVALAAGGV-AGAAPTSPAQNLAANLSSQVRALLSRAPNMPGAAGGSTNQVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVR 984

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BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 715 bits (1845), Expect = 4.330e-225
Identity = 540/972 (55.56%), Postives = 598/972 (61.52%), Query Frame = 3

Query:   39 RCGMTGPQAEVYSAVASSPEIVAALSGAA---PPEXXXXXXXXXAASNGSAASKAVMSGXXXXXXXXLLALRRAALTGALEKTPPP--------------------GSTVTAGQAEARKEEFWRGHVKDLELTASDRLEKYSGKLVELGRAVGRLAAAGKKVVVLGALPDALALVHQYLTETDVPHECWAAHEEMFPP----------DDGTTVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKAEAKAEAEAKSNGTMASLLGVHHRPHGSFPSRSISPQLPPPPPKPAHERLWDGVQGPLWRFRSSSRTPVILAPPSAVLEAARVGGGAGPCRDGEPRSRPGSEETRRSSLMGLGPIDAVLVLDEHLSLPSPSTTXXXXXXXXXXXXXXXXXXXXXXXXYSRAALSSALKSLLALPLLARGESPVVG----PARGSGXXXXXXXXXXXXXXXXXXXXXXXX-IVTVVRFLAEGTVEEALE-EGGAGASMGSLEGRPLGEVIFGPSFAKQKGTPVLPATPTPAAXXXXXXXXXXXXXXXXXDTKATGNKKGEEAEKAASLDVVGAEASGAAAAEAALARARCAVEGKKFAVRREAKD----EASAAVPPVAGTKRKALASRDGDA-------GGPGAHWSESLPPLRRMRMSARSPVGVEEILMEEIVQMDPNDFDTGRGSFDTDETRVFARLAQEGHPIPPPLLSYAVDATLAATPGHSFTERVRDLHLLGIAPDPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQELGCSLSYVDRLMVPPNRNKKLKKAMSPRESSRRDGERSGSGR-TKASVEEWTKTEDRLLVGAVQQFGENWVLVAFSINKYPILRGRMRCGSQCKARYSNLVALGTA-QRLPRTGAARPLSVRLREDYRGAAILPDQPPALTLQMRSRVPLVPIAGAAARQAFSARFTALVKAVQKKPAPPPIPGCDNPEAQ 2798
            RC MT PQA+VYSAVA S E+VAALSG     PP           ASNG +        XXXXXXXX                                       G+ ++AGQAEA+KEEFWRGHVKDLEL+  +RLEKYSGKL +LGRAV RLAAAGKKV+VLGALPDA  LVHQYL ETDVPHECWA + EMFP           D GT  PAXXXXXXXXXXXXXXXXXXXXXXXXXXX         A        +  +A L   HH P GSFPSRS  PQ P  PPKPAHERLW GVQGPLWRFR S RTPV+LAPPSA+LEA  V GG+G C +GE + RP     RR SL+GLGPIDAVL+ DE   + + +T XXXXXXXXXX              +SRAAL++AL+SLL LP  AR  S        PA G G           XXXXXXXXXXXX  +VTVVR++A GT+EE LE EG  G S     G  +                                                                                  RC++EGK F  + EA      E + AV  ++GTKRKA               G  G HWSE  PPLRR      SPVGVE+IL+EE+VQM+P+DFDTGRG FDTDETRVFARLA  GHP+PPPLLSYAVDATLA TPG SFTERVRDLHLLGI+P+PFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQ+L CSLSYVDRL  P NRNKKLKKA+SPRESSRR+GE+ G+GR  K SVEEWTK ED LLV AVQQFGENWVLVAFSINK PILRGRMR GSQ KAR++NLVALG A QR PR   ARP SVRL   Y                    +PLVP+AGAAARQAFSARF ALVKAV+KKP PPPIPGCDNPE +
Sbjct: 1213 RCAMTKPQAKVYSAVARSREVVAALSGEGTTIPPPAL--------ASNGLSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALLSAGQAEAQKEEFWRGHVKDLELSVPERLEKYSGKLAKLGRAVARLAAAGKKVLVLGALPDARLLVHQYLVETDVPHECWAGNGEMFPNVAEEESTRGVDAGTAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSVGPGVAAXXXXXXXSPALAPL-SAHHNPLGSFPSRSPFPQAPVTPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEA--VAGGSGLCPNGE-QPRPDGSSVRRGSLLGLGPIDAVLIFDEGPPITTRTTAXXXXXXXXXX--------------WSRAALAAALQSLLTLPRCARRSSAPRAIRSMPATGGGAAADENGRVDGXXXXXXXXXXXXESVVTVVRYVANGTIEETLEGEGDKGISSLGAGGEGIA--------------------------------------------------------------------------------VRCSLEGKTFLKQGEAASASASEGTEAVS-LSGTKRKAADGXXXXGCSGVDMLGANGKHWSEGAPPLRRT--CPWSPVGVEDILVEEMVQMNPDDFDTGRGCFDTDETRVFARLADGGHPVPPPLLSYAVDATLATTPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLSCSLSYVDRL--PSNRNKKLKKALSPRESSRREGEQPGAGRRNKTSVEEWTKMEDTLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQNKARHANLVALGAAGQRSPR--GARPKSVRLPPTY--------------------LPLVPVAGAAARQAFSARFAALVKAVKKKPIPPPIPGCDNPEVE 2051

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BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.860e-7
Identity = 56/127 (44.09%), Postives = 70/127 (55.12%), Query Frame = 3

Query:   15 VVVEEFVIRCGMTGPQAEVYSAVASSPEIVAALSG---AAPPEXXXXXXXXXAASNGSAASKAVMSGXXXXXXXXLLALRRAALTGALEKTPPP-----------GSTVTAGQAEARKEEFWRGHVK 353
            VVV+E+V+RC MT PQA+VYSAVA S E+VAALSG   A PP           A+  +  + ++ + XXXXXXXX                              G+ ++AGQAEARKEEFWRGHVK
Sbjct:  979 VVVKEYVVRCAMTEPQAKVYSAVARSREVVAALSGEGAAIPPSAPASNGLTTPATTPTPTAASLSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALLSAGQAEARKEEFWRGHVK 1105

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot

BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5JI88_9PHAE	1.560e-275	66.49	Myb-like domain-containing protein n=1 Tax=Ectocar...	[more]
D7FME7_ECTSI	4.330e-225	55.56	Myb-like domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5JHX4_9PHAE	5.860e-7	44.09	SNF2-rel_dom domain-containing protein n=1 Tax=Ect...	[more]