Homology
BLAST of mRNA_C-linearis_contig103.831.1 vs. uniprot
Match: A0A6H5K479_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K479_9PHAE) HSP 1 Score: 51.2 bits (121), Expect = 1.400e-6 Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 3 Query: 255 ISRHPVGLFSLAFFPRRFFPPPSRPV 332
+SRH VGLFSLAFFPRRF PPPSRPV
Sbjct: 1 MSRHAVGLFSLAFFPRRFLPPPSRPV 26
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 335 |
| Cds size | 333 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927374.5144005-CDS-C-linearis_contig103:228761..229094 | 1622927374.5144005-CDS-C-linearis_contig103:228761..229094 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 228762..229094 + |
| 1690879662.2022429-CDS-C-linearis_contig103:228761..229094 | 1690879662.2022429-CDS-C-linearis_contig103:228761..229094 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 228762..229094 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.831.1 >prot_C-linearis_contig103.831.1 ID=prot_C-linearis_contig103.831.1|Name=mRNA_C-linearis_contig103.831.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
VRSTQYKQLIQTACAWRHTDFAWVIAQFPTAAASKPSKLGVAGSQAAKRF
QPPETEQHLSRSSFSFFFLCDTIRPETTRWVQSVTYRATRSVSSRLLSSL
AVSFRPPPVPL back to topmRNA from alignment at C-linearis_contig103:228762..229096+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig103.831.1 ID=mRNA_C-linearis_contig103.831.1|Name=mRNA_C-linearis_contig103.831.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=335bp|location=Sequence derived from alignment at C-linearis_contig103:228762..229096+ (Chordaria linearis ClinC8C monoicous)
GTCCGTTCCACACAATACAAGCAATTGATTCAAACAGCGTGTGCTTGGCG
CCACACTGATTTTGCTTGGGTGATTGCCCAGTTTCCAACGGCAGCAGCAT
CAAAGCCAAGCAAGCTTGGAGTGGCAGGCAGCCAGGCAGCCAAGCGGTTC
CAACCTCCCGAAACAGAACAACACCTCTCTCGTTCCTCTTTCAGTTTTTT
TTTTTTGTGCGACACCATTCGACCAGAAACAACTAGATGGGTTCAATCCG
TCACATATCGCGCCACCCGGTCGGTCTCTTCTCGCTTGCTTTCTTCCCTC
GCCGTTTCTTTCCGCCCCCCTCCCGTCCCGTTGGT back to topCoding sequence (CDS) from alignment at C-linearis_contig103:228762..229096+ >mRNA_C-linearis_contig103.831.1 ID=mRNA_C-linearis_contig103.831.1|Name=mRNA_C-linearis_contig103.831.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig103:228762..229096+ (Chordaria linearis ClinC8C monoicous)
GTCCGTTCCACACAATACAAGCAATTGATTCAAACAGCGTGTGCTTGGCG
CCACACTGATTTTGCTTGGGTGATTGCCCAGTTTCCAACGGCAGCAGCAT
CAAAGCCAAGCAAGCTTGGAGTGGCAGGCAGCCAGGCAGCCAAGCGGTTC
CAACCTCCCGAAACAGAACAACACCTCTCTCGTTCCTCTTTCAGTTTTTT
TTTTTTGTGCGACACCATTCGACCAGAAACAACTAGATGGGTTCAATCCG
TCACATATCGCGCCACCCGGTCGGTCTCTTCTCGCTTGCTTTCTTCCCTC
GCCGTTTCTTTCCGCCCCCCTCCCGTCCCGTTGGTCCGTTCCACACAATA
CAAGCAATTGATTCAAACAGCGTGTGCTTGGCGCCACACTGATTTTGCTT
GGGTGATTGCCCAGTTTCCAACGGCAGCAGCATCAAAGCCAAGCAAGCTT
GGAGTGGCAGGCAGCCAGGCAGCCAAGCGGTTCCAACCTCCCGAAACAGA
ACAACACCTCTCTCGTTCCTCTTTCAGTTTTTTTTTTTTGTGCGACACCA
TTCGACCAGAAACAACTAGATGGGTTCAATCCGTCACATATCGCGCCACC
CGGTCGGTCTCTTCTCGCTTGCTTTCTTCCCTCGCCGTTTCTTTCCGCCC
CCCTCCCGTCCCGTTG back to top
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