mRNA_C-linearis_contig102.810.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig102.810.1
Unique Name	mRNA_C-linearis_contig102.810.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.150e-22
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1

Query:    4 GRVHFYKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAETRAKP 234
            GR+HFY+AA+APD +TCE+HL KI++LN  A +K+ +  R  WA++ATRGNVV DQV SNM+ES NHA+G +    P
Sbjct:  311 GRMHFYQAARAPDKATCEFHLNKIKDLNTAAYEKVASASREKWAVYATRGNVVRDQVNSNMAESLNHALGPDVLPAP 387

[Close]

BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5JN60_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN60_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.780e-22
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 1

Query:   19 YKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAETRAKPVLDLVQDIVMQSAAKVA 285
            Y+AA+A D +TCE ++ KI  LNP AGK +   PR  WAM+ATRGNVV DQVTSNMSE+ N+ MG +TR+K  LD   D   Q   K+A
Sbjct:    2 YEAARATDKATCEANIDKIAALNPAAGKYIRLQPRHEWAMYATRGNVVQDQVTSNMSETANNMMGPDTRSKAPLDFFMDTAFQGLDKLA 90

[Close]

BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5KPK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPK8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 8.100e-17
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1

Query:   19 YKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAE 219
            Y+AA+A D +TCE ++ KI  LNP AG+ +   PR  WAM+ATRGNVV DQVTSNMSE+ N+ +G +
Sbjct:    2 YEAARATDKATCEANIDKIAALNPAAGEYIRLQPRHEWAMYATRGNVVQDQVTSNMSETANNMIGPD 68

[Close]

BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5KFP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.050e-16
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1

Query:   19 YKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAE 219
            Y+AA+A D +TCE ++ KI  LNP AGK +    R  WAM+ATRGNVV DQVTSNMSE+ N+ MG +
Sbjct:    2 YEAARATDKATCEANIDKIAALNPAAGKYIRLQTRHEWAMYATRGNVVQDQVTSNMSETANNMMGPD 68

[Close]

BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5JA84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA84_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.940e-15
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1

Query:   64 LKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAETRAKPVLDLVQDIVMQSA 273
            + +++ LNP A KK+   P  TWA +A + NV+WDQ TSN SES N  +G ETR+K VL  + DIV+ +A
Sbjct:    1 MNEVQNLNPAAFKKLNDTPHNTWANYACKNNVIWDQTTSNFSESLNKLIGEETRSKSVLGFMHDIVLLTA 70

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot

BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JAT0_9PHAE	1.150e-22	57.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN60_9PHAE	2.780e-22	55.06	SWIM-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5KPK8_9PHAE	8.100e-17	56.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KFP9_9PHAE	1.050e-16	58.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JA84_9PHAE	1.940e-15	48.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig102	contig	C-linearis_contig102:584145..585011 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	287
Cds size	285
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927367.4995825-CDS-C-linearis_contig102:584144..584363	1622927367.4995825-CDS-C-linearis_contig102:584144..584363	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig102 584145..584363 +
1690879657.1164281-CDS-C-linearis_contig102:584144..584363	1690879657.1164281-CDS-C-linearis_contig102:584144..584363	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig102 584145..584363 +
1622927367.5143256-CDS-C-linearis_contig102:584944..585010	1622927367.5143256-CDS-C-linearis_contig102:584944..585010	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig102 584945..585010 +
1690879657.1294196-CDS-C-linearis_contig102:584944..585010	1690879657.1294196-CDS-C-linearis_contig102:584944..585010	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig102 584945..585010 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig102.810.1	prot_C-linearis_contig102.810.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig102 584145..585010 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig102:584145..585011+
coding sequence from alignment at C-linearis_contig102:584145..585011+

protein sequence of mRNA_C-linearis_contig102.810.1

>prot_C-linearis_contig102.810.1 ID=prot_C-linearis_contig102.810.1|Name=mRNA_C-linearis_contig102.810.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=95bp
DGRVHFYKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATR
GNVVWDQVTSNMSESTNHAMGAETRAKPVLDLVQDIVMQSAAKVA

mRNA from alignment at C-linearis_contig102:584145..585011+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig102.810.1 ID=mRNA_C-linearis_contig102.810.1|Name=mRNA_C-linearis_contig102.810.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at C-linearis_contig102:584145..585011+ (Chordaria linearis ClinC8C monoicous)
GACGGGCGTGTGCACTTCTACAAGGCGGCGAAGGCGCCGGACGCGTCCAC
CTGCGAGTACCACCTGAAAAAGATCGAGGAGCTCAACCCGGTGGCAGGCA
AGAAGATGGGTGCTGTCCCCCGCCCGACCTGGGCGATGCACGCAACTCGT
GGTAACGTCGTGTGGGATCAGGTCACGTCCAACATGTCGGAGAGCACGAA
CCACGCCATGGGCGCGGAGGTAAGCTGTGCGTATGCACCTTGCGTATTTT
TTCGTGGCGTGGACATACATGGGCTTCGGGCTCCCATCCCACTATGCTTT
ACTGTTTTCATCACATAATTAAGTGACGTTTTATGTTGGGGGTTGATTGG
CATGTACCGTCAGTAGCTGTGATCTCCCGAATCCTCTTCTTTTCAAACAA
ATCCCGGGGGGACAAATTGCCCAAGTTGAAGTACCGGGTGGGGGGTAAGT
CTTCATGCTGCCGGGTCCAAAATGTGATGGACGGGGGAATGAAAGCAACG
GTTTACCGTAGACCCCGTGGCCGTGTTTTGTCTCCGCAGGAAATCAAGAC
CAACCCCAGCCTACTCGAAAGTCGCAATCGTTGGATTGAACGACGAACGC
GTGTGTAAGCACTCTCTCAGCACTGCACTGACTGCTGAGCTGTGCCCACC
CGGCACAAGTATCGTGACATGACGCCTCGCCGTGAGTTGTCCGATTTGTG
TAGACTTGTGGGATAGTGGGGTTTCACGGGGAAGTTTCCTTACTCTAGCT
TATACCCCGCCCCTTCCACGTGTTAACGTGTGCTTTGACTCGTGTGGCAG
ACGAGGGCCAAGCCGGTGCTCGATCTAGTTCAGGACATCGTCATGCAGTC
GGCAGCCAAGGTCGCAG

Coding sequence (CDS) from alignment at C-linearis_contig102:584145..585011+

>mRNA_C-linearis_contig102.810.1 ID=mRNA_C-linearis_contig102.810.1|Name=mRNA_C-linearis_contig102.810.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at C-linearis_contig102:584145..585011+ (Chordaria linearis ClinC8C monoicous)
GACGGGCGTGTGCACTTCTACAAGGCGGCGAAGGCGCCGGACGCGTCCAC
CTGCGAGTACCACCTGAAAAAGATCGAGGAGCTCAACCCGGTGGCAGGCA
AGAAGATGGGTGCTGTCCCCCGCCCGACCTGGGCGATGCACGCAACTCGT
GGTAACGTCGTGTGGGATCAGGTCACGTCCAACATGTCGGAGAGCACGAA
CCACGCCATGGGCGCGGAGGACGGGCGTGTGCACTTCTACAAGGCGGCGA
AGGCGCCGGACGCGTCCACCTGCGAGTACCACCTGAAAAAGATCGAGGAG
CTCAACCCGGTGGCAGGCAAGAAGATGGGTGCTGTCCCCCGCCCGACCTG
GGCGATGCACGCAACTCGTGGTAACGTCGTGTGGGATCAGGTCACGTCCA
ACATGTCGGAGAGCACGAACCACGCCATGGGCGCGGAGACGAGGGCCAAG
CCGGTGCTCGATCTAGTTCAGGACATCGTCATGCAGTCGGCAGCCAAGGT
CGCAACGAGGGCCAAGCCGGTGCTCGATCTAGTTCAGGACATCGTCATGC
AGTCGGCAGCCAAGGTCGCA