mRNA_C-linearis_contig102.810.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.150e-22 Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1 Query: 4 GRVHFYKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAETRAKP 234
GR+HFY+AA+APD +TCE+HL KI++LN A +K+ + R WA++ATRGNVV DQV SNM+ES NHA+G + P
Sbjct: 311 GRMHFYQAARAPDKATCEFHLNKIKDLNTAAYEKVASASREKWAVYATRGNVVRDQVNSNMAESLNHALGPDVLPAP 387
BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5JN60_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN60_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 2.780e-22 Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 1 Query: 19 YKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAETRAKPVLDLVQDIVMQSAAKVA 285
Y+AA+A D +TCE ++ KI LNP AGK + PR WAM+ATRGNVV DQVTSNMSE+ N+ MG +TR+K LD D Q K+A
Sbjct: 2 YEAARATDKATCEANIDKIAALNPAAGKYIRLQPRHEWAMYATRGNVVQDQVTSNMSETANNMMGPDTRSKAPLDFFMDTAFQGLDKLA 90
BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5KPK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPK8_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 8.100e-17 Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 Query: 19 YKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAE 219
Y+AA+A D +TCE ++ KI LNP AG+ + PR WAM+ATRGNVV DQVTSNMSE+ N+ +G +
Sbjct: 2 YEAARATDKATCEANIDKIAALNPAAGEYIRLQPRHEWAMYATRGNVVQDQVTSNMSETANNMIGPD 68
BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5KFP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP9_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.050e-16 Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1 Query: 19 YKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAE 219
Y+AA+A D +TCE ++ KI LNP AGK + R WAM+ATRGNVV DQVTSNMSE+ N+ MG +
Sbjct: 2 YEAARATDKATCEANIDKIAALNPAAGKYIRLQTRHEWAMYATRGNVVQDQVTSNMSETANNMMGPD 68
BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5JA84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA84_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.940e-15 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 64 LKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAETRAKPVLDLVQDIVMQSA 273
+ +++ LNP A KK+ P TWA +A + NV+WDQ TSN SES N +G ETR+K VL + DIV+ +A
Sbjct: 1 MNEVQNLNPAAFKKLNDTPHNTWANYACKNNVIWDQTTSNFSESLNKLIGEETRSKSVLGFMHDIVLLTA 70 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.810.1 >prot_C-linearis_contig102.810.1 ID=prot_C-linearis_contig102.810.1|Name=mRNA_C-linearis_contig102.810.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=95bp DGRVHFYKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRback to top mRNA from alignment at C-linearis_contig102:584145..585011+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.810.1 ID=mRNA_C-linearis_contig102.810.1|Name=mRNA_C-linearis_contig102.810.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at C-linearis_contig102:584145..585011+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:584145..585011+ >mRNA_C-linearis_contig102.810.1 ID=mRNA_C-linearis_contig102.810.1|Name=mRNA_C-linearis_contig102.810.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at C-linearis_contig102:584145..585011+ (Chordaria linearis ClinC8C monoicous)back to top |