mRNA_C-linearis_contig102.804.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.804.1 vs. uniprot
Match: D7FYM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM3_ECTSI) HSP 1 Score: 538 bits (1386), Expect = 2.210e-179 Identity = 315/482 (65.35%), Postives = 358/482 (74.27%), Query Frame = 1 Query: 148 KIALAPFVQGEPSVHLLDQDGKASAARDRSPEDDFQMAAQSLGVGPTDESVPEGEGTGGDNQTRDPSAHAGDEKAEG----DGATGSGATKEAASPPEHPLQKAITSFDMALGELNQLVHLVDLGRAGEFMVLKRVTPTEEDQATAMPDQSARPGDGVPREALPTMVNVKRSQLKGAAEQLRKRAKRLRETSKVQKIFQQGVMHLRKSWRIIAPNHGKVNVPLQVGEALCVDCSFGSAGGRPVPNTAAAGSRHRHPWLFQLTCSEGGQLKAQPSSRQHLKALEVQLVSVVTGACEHSLRASFPACSDGGDNAVAGAVAGEERRAEPPSVSNGGGTPEAGGLGDFQIQMDELEVHISRQQHSVFWEEVFETLKAEALVDGRDGWLVRQDARCGDDVGANRT----VVPDVVARMDAGAGAKRRLVSLSPRGTSIPGRTAGARVVHVLDDEVMVEMNSHFQLGYRLVS---GKCSSGARAEASC 1560
KIAL PFV +P VH D DG AS AR+RS +DDFQ+A Q E +G+ G RD A G++ E + A GSG T E+AS EHPLQ A+TSFDMALGELNQLVHLVDL RAGEFM L+RVTP++EDQA AM DQSARPGDGVP EALP++V +KRSQLKGAAEQLR+RAKRLRET+KVQ +FQQGV+HLRKSWRI+APNHGKVNVPLQVGE L VDCSFGSAGG+ VP TAAAG+RHRHPWLFQLTC EGG+L+AQPS+ Q LKA EVQLVSV TG CEHSLRASFPA SD A AG+ R+ PP SNGG + D ++MD+LE HISR QHSVFWEEVFETLKAEALVDG+DGWLV QDARCG DV RT + P+VV R+++GA KRRLV LSPRG + A ARV HVLDDEVMVEM+SH LGYRLVS G C G + + SC
Sbjct: 55 KIALVPFV-ADP-VHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHG---HPRDTGAGEGNDDLENGAKKEEAIGSGGTHESASLAEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPEALPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDA--AAGDCRK--PPPASNGGAELKLERRSD--VRMDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPAMAPEVVGRIESGA--KRRLVGLSPRGMTTSTLNARARVAHVLDDEVMVEMDSHSLLGYRLVSANPGGCREGCQFKKSC 523 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.804.1 >prot_C-linearis_contig102.804.1 ID=prot_C-linearis_contig102.804.1|Name=mRNA_C-linearis_contig102.804.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=752bp MEGLEGNAHTDSRVVKEMGPSTKIALAPFVQGEPSVHLLDQDGKASAARDback to top mRNA from alignment at C-linearis_contig102:525247..528874+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.804.1 ID=mRNA_C-linearis_contig102.804.1|Name=mRNA_C-linearis_contig102.804.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3628bp|location=Sequence derived from alignment at C-linearis_contig102:525247..528874+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:525247..528874+ >mRNA_C-linearis_contig102.804.1 ID=mRNA_C-linearis_contig102.804.1|Name=mRNA_C-linearis_contig102.804.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4512bp|location=Sequence derived from alignment at C-linearis_contig102:525247..528874+ (Chordaria linearis ClinC8C monoicous)back to top |