Homology
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match:
D7FYM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM0_ECTSI)
HSP 1 Score: 277 bits (709), Expect = 5.830e-89
Identity = 150/183 (81.97%), Postives = 164/183 (89.62%), Query Frame = 3
Query: 297 RPASPQMKAPHISTLYDKQEVMIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMGSRGDGADNTHSKEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELGSGW--WGTSEGHAGEE---TCGGFFAKKRRSSSEDLGTTLPGEVAFAPTHTRVLQLEEVCHTQMNRIQELESQV 830
RP SPQMK+PHISTLY+KQ+VM++HFGVTQKQALRTQALLRLGVT++DVRIAERLMGSR +GADNT SKEEWLLGVTYAQMSFHKALQVLGISE+VVEEERSRRLGELGSG G SE AG+E TCG FF KKRRSS E+LGTTLPGEVAFA ++RVLQLEEVCHTQM RIQELESQ+
Sbjct: 58 RPFSPQMKSPHISTLYEKQDVMVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMGSRSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELGSGGRGGGASECGAGQEAEDTCGRFFIKKRRSSIEELGTTLPGEVAFA--NSRVLQLEEVCHTQMTRIQELESQL 238
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match:
D7FYL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL6_ECTSI)
HSP 1 Score: 96.3 bits (238), Expect = 4.070e-20
Identity = 64/166 (38.55%), Postives = 93/166 (56.02%), Query Frame = 3
Query: 360 MIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMGSRGDGADNTHSKEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELGSGWWGT-------SEGHAGEETCGGFFAKKRR--SSSEDLGTTLPGEVAFAPTHTRVLQLEEVCHTQMNRIQELESQV 830
M + G T +Q LR QALL+LGVTE+DVR+A L+ R +N +K EWLL ++ QMS KAL+ LG+S+ ++EE+R R LG+LG WG +E + CG F K++ +++ G P V +LE+ C +Q RIQ+LE +V
Sbjct: 1 MGKFIGATPQQVLRVQALLKLGVTEEDVRLAAELLRPR---TNNEGTKAEWLLSLSMEQMSRLKALEELGVSQDMLEEDRGRILGDLGIPRWGNPGDSMVDAERDSSTSACGPVFRKRQHIEGTAKRWGLAQPTR----QKEVEVAKLEDECLSQHLRIQQLELEV 159
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match:
A0A836CJU9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU9_9STRA)
HSP 1 Score: 94.4 bits (233), Expect = 5.070e-18
Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = 3
Query: 300 PASPQMKAPHISTLYDKQEVMIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMG----------SRGDGADNTH-----SKEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELG 623
P M P +S D++ +M + FGV+ +Q RTQALLRLGVTE D+++AERL +R +G + SKEE LLG+T +++SF KAL+VLG+ ++VEEER+RRLG+LG
Sbjct: 67 PGGGSMLTPGLSRGKDQETIMQKQFGVSMEQMKRTQALLRLGVTEDDLKVAERLFAELPGGEELRKARAEGVISPAIPRKLSKEERLLGLTKSEISFCKALEVLGVDMAIVEEERARRLGQLG 189
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match:
A0A6H5KHW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW8_9PHAE)
HSP 1 Score: 77.0 bits (188), Expect = 6.310e-12
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 3
Query: 300 PASPQMKAPHISTLYDKQEVMIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMGSRGDGADNTH-SKEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELGSGWWGTS 644
P+S H+ST Y K+E+M RH+G+ Q R +ALLR+GV E+D+ IA+RL+ + +++T +KEE LLG T Q KAL +LG++E + R+ L LG +G S
Sbjct: 202 PSSKDQPEEHLSTKYTKEELMARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRVKALHILGLTEESFDRCRAVMLSSLGPSAFGYS 317
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match:
A0A836CFQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ6_9STRA)
HSP 1 Score: 77.8 bits (190), Expect = 7.600e-12
Identity = 52/122 (42.62%), Postives = 72/122 (59.02%), Query Frame = 3
Query: 306 SPQMKAPHISTLYDKQEVMIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMGSRGDGADNTHSKEEWLLGVTYAQMSFHKALQVLGISES--------------VVEEERSRRLGELGSG 629
SP M P +S D++ VM ++FGV+ +Q RTQALLRLGVTE+D+R+AERL G + SKEE LLG+T +++SF+KAL+ + + VE + RLG LG G
Sbjct: 487 SPNMTTPGMSRDKDQETVMGKYFGVSVEQMKRTQALLRLGVTEEDLRVAERLFAVL-PGNEELVSKEERLLGLTRSEISFYKALEGVRVQRCGACADDAVNPGANVEVEVAIAERLGSLGIG 607
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match:
A0A6H5K919_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K919_9PHAE)
HSP 1 Score: 67.0 bits (162), Expect = 4.940e-10
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 3
Query: 501 KEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELGSGWWGT-------SEGHAGEETCGGFFAKKRR--SSSEDLGTTLPGEVAFAPTHTRVLQLEEVCHTQMNRIQELESQVRN 836
K EWLL ++ QMS KAL+ LG+S++++EE+R R LG LG WG +E + TCG F K++ ++++ G P V +LE+ C +Q RIQ+LE +VR+
Sbjct: 2 KAEWLLSLSVEQMSRLKALEQLGVSQAMLEEDRGRILGNLGIPRWGNPGDSMVDTEQDSSTSTCGPIFRKRQHIEATAKRWGLAQPTR----QMEVEVAKLEDECLSQHLRIQQLELEVRS 118
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match:
D8LT43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT43_ECTSI)
HSP 1 Score: 60.5 bits (145), Expect = 1.670e-7
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 3
Query: 360 MIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMGSRGDGADNTH-SKEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELGSGWWGTS 644
M RH+G+ Q R +ALLR+GV E+D+ IA+RL+ + +++T +KEE LLG Q KAL +LG++E + R+ L LG +G S
Sbjct: 1 MARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYNSQQRQRMKALHILGLTEESFDRCRAVMLSSLGPSAFGYS 96
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 7
0 1 Expect = 5.83e-89 / Id = 81.97 Expect = 4.07e-20 / Id = 38.55 Expect = 5.07e-18 / Id = 45.53 Expect = 6.31e-12 / Id = 40.52 Expect = 7.60e-12 / Id = 42.62 Expect = 4.94e-10 / Id = 36.36 Expect = 1.67e-7 / Id = 39.58 Sequence D7FYM0_ECTSI D7FYL6_ECTSI A0A836CJU9_9STRA A0A6H5KHW8_9PHAE A0A836CFQ6_9STRA A0A6H5K919_9PHAE D8LT43_ECTSI back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.797.1
>prot_C-linearis_contig102.797.1 ID=prot_C-linearis_contig102.797.1|Name=mRNA_C-linearis_contig102.797.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=301bp
MLVKPEDVVVETATAVEEAPTASVEEPVTAIAGVVGAAVDEATTSPGEEE back to top mRNA from alignment at C-linearis_contig102:475326..478102+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.797.1 ID=mRNA_C-linearis_contig102.797.1|Name=mRNA_C-linearis_contig102.797.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2777bp|location=Sequence derived from alignment at C-linearis_contig102:475326..478102+ (Chordaria linearis ClinC8C monoicous)CTGGGCGAAGCACGAGCCTCCGAGCTCGGTCTTGTGTAGTAAGGACGGGG
GGTGCAACACCGCGGTCGGATAAAGGC ATGCTTGTGAAACCGGAGGACGT
CGTTGTGGAGACTGCAACTGCTGTAGAGGAGGCCCCGACTGCAAGTGTAG
AGGAGCCTGTTACCGCCATCGCTGGGGTGGTCGGTGCTGCTGTCGATGAA
GCCACAACTAGTCCCGGGGAAGAGGAAGGCAACTCAGACGAGCCGCCTGG
AGAGTCACCGACGAATGATGACCCAGAGCTGGATAACGAGAAGCAACGAC
CGGCGTCTCCCCAAATGAAGGCTCCCCACATCTCGACGCTCTATGATAAA
CAG GTTGGTCAGGCTTGGTTACAATGCTTTCATTTGACTTCTACTATCGA
CGGACGGGGTTGGTTTGTGTTGTAGAGAGGCATCCCGATATTTTGATATT
TTGTTGTTGGCGAACAGCCACGAGTAAACGCCTGAAACTCTACTATTATT
GATGAATACAATACAGGATCGAAGAGAGAACTTATTTTGTGTTTTGTTGC
CAAGGTTTCCGGCACCGGCATTTATTGCTTGCTCAACCTAACCGTAGCCC
TGACCCTTCTCGCCGCGCCGACATATGTAGGAGGTGATGATCAGGCACTT
CGGCGTGACACAGAAGCAGGCGCTGAGAACGCAAGCGTTGCTTCGACTGG
GCGTGACCGAGCAGGACGTTCGGATCGCGGAGCGGTTGATGGGGTCAAGA
GGAGACGGAGCAGACAAC GTATGTTGTGACTTCTATGCTTGTTTTTTCGT
TTTTTTCCGAATTCAGTTTTGCCGCTGTCGTGCCAAAGTTCTCATCCTAT
TGGAGCAACTTCGCGTGTATGCTTGCTATCCTTTTTTTTTAGAGAACAGC
CTAAATTACGCGCGCTCCCTGCAACCTCCTTGTAGACTATAGGTCTATAA
TTTATATACACGTGTCGAATCCACGCAAGGTAACACATTTGCACAGTCTG
AAGGTGGATACTCAGTAATCTCGTGCGTGAACGGGCTTTTCACAGGAAGC
GACGGGGATCGGCTTCTCACCACTGACTAACTTGGAAAATGCGTTTGCCC
TGTAACGAGTTGGTTTTCATATCGACCCGGGGTCGACCCCTTTTTTCGTC
CAATCATGGCACGTCCTCAGACGCACTCCAAGGAAGAGTGGCTGCTTGGA
GTGACATACGCGCAGATGAGCTTCCATAAGGCCCTCCAGGTTTTAGGGAT
ATCTGAAT GTGAGAGGAAGAGAGGAGGGTGGGCGCAAAGCTCAGGCTCGT
GCGCAAGCCTATCCCAGCTAGTACTGCTGTGGTCTGTCTGAGAGTGGCCT
GTCAAAACCTTTACTGGTACTTACTGTACTTGTTTGTAGCAAGCGTGTTG
GAGCTCCGGCGCTTGGGCTGGCCCTCGCAAAGAATTATCCCAGAGGCGAG
CCAAACGAGTAACAGCGGCATCCCTCTCAGTCTCTGCGTCCCCTCGTCGG
GTCTGCCCTCGTCGGGTCTGCCGCGGGTTGGAACCCATCATTTTGTGTCC
TGTCTCTGGAGACCCGCTAGCCCTAACGTTCTCGAGGACGGACATGTCTT
GAAGAGGAAACAAGCATTTCGTTGCACAGAACGCGGGGAGGTTTCTATGT
TGCACCGATCGTGAATCGGTATTTCGCAACTCCTTCGCTGTCGGTCTTTT
TTGGGCGATCAAGTGATCTCCTCCCACATGACCCCACCCCCAAATATGGG
GCTCAAACTACGATCTGAATACTCTTGTTGAGTAGCCCTCTTCTACTGGA
GGAGTTGCTGGGCAAGTTTCCCCCCTCTTCTCATGCATTATATATCCAGT
CGTATCGATTGCAGATCCCGTACACCAATCGTTCATTATCGTTCATTTTA
TGCATCGTGGGGAAACTGTGTGAACTATCTGCCGGTTGACATGTACAAAT
CGTAGCATCGCGTCTGTAGTGTTTGTGGTTGACCTCGTTTCCGCGCCAAA
CGCTGCTGCTGTATCGTTGTTTATTTCTTTTCAAAAAGCGGTGGTGGAGG
AGGAGAGGTCACGGCGGCTGGGCGAGCTTGGGTCGGGTTGGTGGGGGACT
TCGGAAGGTCATGCAGGGGAAGAAACGTGCGGCGGGTTCTTCGCGAAAAA
GCGGCGCTCTTCGAGCGAAGACCTTGGCACCACCCTGCCCGGGGAAGTGG
CCTTCGCACCGACGCAT GTGAGGCGACGTTCAACTTTCCGCTCTGATCCC
CCCGGGCCGCCCGAGAAACCCAGGCGACGAAACCGACCGCCGTGGATTCG
GCTGTTGATTATGTTGAGTATTCCCCTTTGGTGGTTGATCCGTCGCTCCG
CTTCCCGCTGCACGACTCCCGGTACTTGCGTTACTCGCTACTTACAGACA
CGAGTGCTGCAGCTTGAGGAGGTATGCCACACACAAATGAATCGAATTCA
GGAGCTTGAGAGCCAGGTGAGAAACCAGCGTGACAGCGGAGGCCAGGTGG
ATCTGAGCCAACGCTGTGGTGATTGCTGTCCAGTTAGTTGTTTTGAGCTG
CATCAGATCCGCCGTGTACAAGCAGGAAGCAGGAGAGGGGGACCTCGAAG
CAAGCGTGTATTTGTGTGA GTTGCACCACGGCTGTTTCGGTTCAAGCCTG
CGCGGCTGCATTGACAAGTTTTCGCCTTCTCCAAACAGGCGTTTTTCGGT
CCCCTTCGTGTTCGTCCAACTCTTGGCACGTTGATCTATCCGTGTGGTTT
GGGATAGCTTGATTGTATGGCTACCAG back to top Coding sequence (CDS) from alignment at C-linearis_contig102:475326..478102+
>mRNA_C-linearis_contig102.797.1 ID=mRNA_C-linearis_contig102.797.1|Name=mRNA_C-linearis_contig102.797.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at C-linearis_contig102:475326..478102+ (Chordaria linearis ClinC8C monoicous) back to top