mRNA_C-linearis_contig102.797.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match: D7FYM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM0_ECTSI) HSP 1 Score: 277 bits (709), Expect = 5.830e-89 Identity = 150/183 (81.97%), Postives = 164/183 (89.62%), Query Frame = 3 Query: 297 RPASPQMKAPHISTLYDKQEVMIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMGSRGDGADNTHSKEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELGSGW--WGTSEGHAGEE---TCGGFFAKKRRSSSEDLGTTLPGEVAFAPTHTRVLQLEEVCHTQMNRIQELESQV 830
RP SPQMK+PHISTLY+KQ+VM++HFGVTQKQALRTQALLRLGVT++DVRIAERLMGSR +GADNT SKEEWLLGVTYAQMSFHKALQVLGISE+VVEEERSRRLGELGSG G SE AG+E TCG FF KKRRSS E+LGTTLPGEVAFA ++RVLQLEEVCHTQM RIQELESQ+
Sbjct: 58 RPFSPQMKSPHISTLYEKQDVMVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMGSRSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELGSGGRGGGASECGAGQEAEDTCGRFFIKKRRSSIEELGTTLPGEVAFA--NSRVLQLEEVCHTQMTRIQELESQL 238
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match: D7FYL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL6_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 4.070e-20 Identity = 64/166 (38.55%), Postives = 93/166 (56.02%), Query Frame = 3 Query: 360 MIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMGSRGDGADNTHSKEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELGSGWWGT-------SEGHAGEETCGGFFAKKRR--SSSEDLGTTLPGEVAFAPTHTRVLQLEEVCHTQMNRIQELESQV 830
M + G T +Q LR QALL+LGVTE+DVR+A L+ R +N +K EWLL ++ QMS KAL+ LG+S+ ++EE+R R LG+LG WG +E + CG F K++ +++ G P V +LE+ C +Q RIQ+LE +V
Sbjct: 1 MGKFIGATPQQVLRVQALLKLGVTEEDVRLAAELLRPR---TNNEGTKAEWLLSLSMEQMSRLKALEELGVSQDMLEEDRGRILGDLGIPRWGNPGDSMVDAERDSSTSACGPVFRKRQHIEGTAKRWGLAQPTR----QKEVEVAKLEDECLSQHLRIQQLELEV 159
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match: A0A836CJU9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU9_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 5.070e-18 Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = 3 Query: 300 PASPQMKAPHISTLYDKQEVMIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMG----------SRGDGADNTH-----SKEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELG 623
P M P +S D++ +M + FGV+ +Q RTQALLRLGVTE D+++AERL +R +G + SKEE LLG+T +++SF KAL+VLG+ ++VEEER+RRLG+LG
Sbjct: 67 PGGGSMLTPGLSRGKDQETIMQKQFGVSMEQMKRTQALLRLGVTEDDLKVAERLFAELPGGEELRKARAEGVISPAIPRKLSKEERLLGLTKSEISFCKALEVLGVDMAIVEEERARRLGQLG 189
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match: A0A6H5KHW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW8_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 6.310e-12 Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 3 Query: 300 PASPQMKAPHISTLYDKQEVMIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMGSRGDGADNTH-SKEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELGSGWWGTS 644
P+S H+ST Y K+E+M RH+G+ Q R +ALLR+GV E+D+ IA+RL+ + +++T +KEE LLG T Q KAL +LG++E + R+ L LG +G S
Sbjct: 202 PSSKDQPEEHLSTKYTKEELMARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRVKALHILGLTEESFDRCRAVMLSSLGPSAFGYS 317
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match: A0A836CFQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ6_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 7.600e-12 Identity = 52/122 (42.62%), Postives = 72/122 (59.02%), Query Frame = 3 Query: 306 SPQMKAPHISTLYDKQEVMIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMGSRGDGADNTHSKEEWLLGVTYAQMSFHKALQVLGISES--------------VVEEERSRRLGELGSG 629
SP M P +S D++ VM ++FGV+ +Q RTQALLRLGVTE+D+R+AERL G + SKEE LLG+T +++SF+KAL+ + + VE + RLG LG G
Sbjct: 487 SPNMTTPGMSRDKDQETVMGKYFGVSVEQMKRTQALLRLGVTEEDLRVAERLFAVL-PGNEELVSKEERLLGLTRSEISFYKALEGVRVQRCGACADDAVNPGANVEVEVAIAERLGSLGIG 607
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match: A0A6H5K919_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K919_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 4.940e-10 Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 3 Query: 501 KEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELGSGWWGT-------SEGHAGEETCGGFFAKKRR--SSSEDLGTTLPGEVAFAPTHTRVLQLEEVCHTQMNRIQELESQVRN 836
K EWLL ++ QMS KAL+ LG+S++++EE+R R LG LG WG +E + TCG F K++ ++++ G P V +LE+ C +Q RIQ+LE +VR+
Sbjct: 2 KAEWLLSLSVEQMSRLKALEQLGVSQAMLEEDRGRILGNLGIPRWGNPGDSMVDTEQDSSTSTCGPIFRKRQHIEATAKRWGLAQPTR----QMEVEVAKLEDECLSQHLRIQQLELEVRS 118
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Match: D8LT43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT43_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 1.670e-7 Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 3 Query: 360 MIRHFGVTQKQALRTQALLRLGVTEQDVRIAERLMGSRGDGADNTH-SKEEWLLGVTYAQMSFHKALQVLGISESVVEEERSRRLGELGSGWWGTS 644
M RH+G+ Q R +ALLR+GV E+D+ IA+RL+ + +++T +KEE LLG Q KAL +LG++E + R+ L LG +G S
Sbjct: 1 MARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYNSQQRQRMKALHILGLTEESFDRCRAVMLSSLGPSAFGYS 96 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.797.1 >prot_C-linearis_contig102.797.1 ID=prot_C-linearis_contig102.797.1|Name=mRNA_C-linearis_contig102.797.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=301bp MLVKPEDVVVETATAVEEAPTASVEEPVTAIAGVVGAAVDEATTSPGEEEback to top mRNA from alignment at C-linearis_contig102:475326..478102+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.797.1 ID=mRNA_C-linearis_contig102.797.1|Name=mRNA_C-linearis_contig102.797.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2777bp|location=Sequence derived from alignment at C-linearis_contig102:475326..478102+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:475326..478102+ >mRNA_C-linearis_contig102.797.1 ID=mRNA_C-linearis_contig102.797.1|Name=mRNA_C-linearis_contig102.797.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at C-linearis_contig102:475326..478102+ (Chordaria linearis ClinC8C monoicous)back to top |