mRNA_C-linearis_contig102.779.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Match: A0A7S1UA59_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UA59_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.960e-12 Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 2 Query: 155 RGSAPEMHPLVRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVARGRQVVRDSEEFSQFSRYRAMRRRYSD 406
RG MHPLVR+L KRF+L R +P+G A + + + A+ NA LT ++KRAVA+GR +VR+ Q +YRAMR+RY +
Sbjct: 22 RGPPRRMHPLVRDLYKRFLLVGREYPTGLADVRARAKAAILANAHLTEEVEIKRAVAKGRYMVREMYAVMQLKKYRAMRKRYEE 105
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Match: A0A8J5XPH7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPH7_DIALT) HSP 1 Score: 69.3 bits (168), Expect = 1.790e-11 Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 2 Query: 173 MHPLVRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVARGRQVVRDSEEFSQFSRYRAMRRRYSDP 409
MHPLVR+L KRF+L + +P G A + K ++AL+ A L ++KRAVARGR +VR+ + + +YR M++RYS P
Sbjct: 1 MHPLVRDLYKRFLLVGKDYPGGLALVRRKAKEALRNQAHLQDELEIKRAVARGRWMVRELQGIIKLKKYREMKKRYSSP 79
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Match: A0A6G0WG47_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WG47_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.340e-9 Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 2 Query: 173 MHPLVRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVARGRQVVRDSEEFSQFSRYRAMRRRYSDPDKK*MLR 430
MHPLVR++ KR ++ R +P G + +EK ++A + A LT+ E++KRAV RGR +V++ Q +YR M RY+ + + +LR
Sbjct: 1 MHPLVRDVYKRILVVGRDYPMGLDYVREKAKEAFYKEAHLTADEEIKRAVHRGRWMVKEMIGVIQLKKYRTMNARYTPAEMRMLLR 86
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Match: L1J1M7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J1M7_GUITC) HSP 1 Score: 61.6 bits (148), Expect = 1.120e-8 Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 2 Query: 173 MHPLVRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVARGRQVVRDSE-EFSQFSRYRAMRRRYS 403
MHPLVR+L KRFIL R +P G K+KV++A N L +++RAVARGR +R+ QF +YR M+ RYS
Sbjct: 1 MHPLVRDLYKRFILVGRDYPGGLQIIKKKVKEAFFTNRHLEDDIEIRRAVARGRWYIRNELCAIIQFKKYRVMKERYS 78
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Match: UPI000F5F551E (electron transfer flavoprotein regulatory factor 1 n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI000F5F551E) HSP 1 Score: 61.2 bits (147), Expect = 4.410e-8 Identity = 42/132 (31.82%), Postives = 68/132 (51.52%), Query Frame = 2 Query: 26 SSGGQQGG--RLKFDRKCAPSTSLREGQQPN*LSTLAPPERSRSYRGSAPEMHPLVRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVARGRQVVRDSEEFSQFSRYRAMRRRYSDPDK 415
S GGQ+ G L + R PST+ + + +S +A P R R L K + R +P G A+F+E+++ A +N +T E +K+ VARG V+++ E +YRAM++RY +P+K
Sbjct: 5 SEGGQRRGDVSLTYHRLNIPSTTRLVRVKGHLVSDMANPLRGEVIR------------LYKNLLYLGREYPQGSAYFRERLKSAFMKNKDVTDPEKIKKLVARGDFVIKELEALYFLRKYRAMKKRYYEPEK 124
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Match: A0A5A8CP96_CAFRO (Complex1_LYR_dom domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CP96_CAFRO) HSP 1 Score: 59.7 bits (143), Expect = 4.930e-8 Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 2 Query: 173 MHPLVRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVARGRQVVRDSEEFSQFSRYRAMRRRY 400
MHPLVR+L KRF++A R +P G + + + A Q NA LT +KRAVA+GR VR+ +YR++++RY
Sbjct: 1 MHPLVRDLYKRFLVAGRDYPQGLDVVRRRAKLAFQENAHLTDEVAIKRAVAKGRYWVREIHATHALHKYRSIKKRY 76
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Match: H2SF26_TAKRU (Complex1_LYR_dom domain-containing protein n=12 Tax=Percomorphaceae TaxID=1489872 RepID=H2SF26_TAKRU) HSP 1 Score: 59.7 bits (143), Expect = 6.040e-8 Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 2 Query: 185 VRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVARGRQVVRDSEEFSQFSRYRAMRRRYSDPDK 415
V L K + R +P G A+F+E+++ A +N +T E++K+ VARG V+++ E +YRAM++RY +PDK
Sbjct: 9 VIRLYKNLLYLGREYPQGSAYFRERLKSAFMKNKDVTDPEEIKKLVARGEFVIKEIEALYFLKKYRAMKKRYYEPDK 85
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Match: A0A7S2C6K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C6K2_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 7.160e-8 Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 2 Query: 167 PEMHPLVRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVARGRQVVRDSEEFSQFSRYRAMRRRYSD 406
P MHPLVR+L KRFI R +P + ++K R+A+ +N LT ++ AV RGR +V++ Q +YRA+++RY D
Sbjct: 48 PTMHPLVRDLFKRFIYVGRDYPLPPPYVRDKAREAILKNKDLTDAREIIEAVKRGRWMVKEIIGVIQLKKYRALKKRYYD 127
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Match: A0A329S5G4_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S5G4_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 5.660e-7 Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 2 Query: 173 MHPLVRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVARGRQVVRDSEEFSQFSRYRAMRRRYSDPDKK*MLRF---KRVLGE 451
M P VR+L KRF+L R +P G +EKV+ A +N LT +K+A+ RGR +VR+ Q +YR + RY+ D + LR +RVL E
Sbjct: 1 MEPKVRDLYKRFLLVGRDYPLGLGHVREKVKVAFFQNRDLTDTVAIKKAIKRGRWMVREMVGVIQLKKYRTLNSRYTPEDLREKLRDIENRRVLAE 96
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Match: A0A067CLU1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CLU1_SAPPC) HSP 1 Score: 57.4 bits (137), Expect = 7.050e-7 Identity = 31/86 (36.05%), Postives = 53/86 (61.63%), Query Frame = 2 Query: 173 MHPLVRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVARGRQVVRDSEEFSQFSRYRAMRRRYSDPDKK*MLR 430
M P VR+L KRF++ + +P G + + KV++A + A L ++K+AV+RGR +V++ Q +YRAM +RY+ + +LR
Sbjct: 1 MQPRVRDLYKRFLVVGKDYPLGLEYVRPKVKEAFFKKAALADEAEIKKAVSRGRWMVKEMIGVIQLKKYRAMNQRYTPAEMHTLLR 86 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.779.1 >prot_C-linearis_contig102.779.1 ID=prot_C-linearis_contig102.779.1|Name=mRNA_C-linearis_contig102.779.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=83bp MHPLVRNLCKRFILAARRHPSGEAWFKEKVRQALQRNALLTSYEDVKRAVback to top mRNA from alignment at C-linearis_contig102:226700..231416- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.779.1 ID=mRNA_C-linearis_contig102.779.1|Name=mRNA_C-linearis_contig102.779.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4717bp|location=Sequence derived from alignment at C-linearis_contig102:226700..231416- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:226700..231416- >mRNA_C-linearis_contig102.779.1 ID=mRNA_C-linearis_contig102.779.1|Name=mRNA_C-linearis_contig102.779.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at C-linearis_contig102:226700..231416- (Chordaria linearis ClinC8C monoicous)back to top |