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Homology
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5KIV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIV8_9PHAE) HSP 1 Score: 127 bits (320), Expect = 3.090e-31 Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 1 Query: 100 MRRVTSEGLLQHLADSGVPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
M+ + +E LLQ L D+GVPAAQE+ +E +ARQ QAASRAALKDA VFGRT GRQT+QTIL +HAYD DEG ST+P YR+AEILGV PA F+ ARQR + PP
Sbjct: 1 MKAMNAETLLQSLIDNGVPAAQEIHQELADARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDPAEFSRARQRAKSLQPRVPP 108
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5JI78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI78_9PHAE) HSP 1 Score: 119 bits (299), Expect = 2.320e-28 Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 1 Query: 100 MRRVTSEGLLQHLADSGVPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFN 378
M+ + +E LLQ L D+GVPAAQE+ +E +ARQ QAASRAALKDA VFGRT GRQT+QTIL +HAYD DEG ST+P YR+AEILGV PA F+
Sbjct: 1 MKAMNAETLLQSLIDNGVPAAQEIHQELADARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDPAEFS 93
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5JIV9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV9_9PHAE) HSP 1 Score: 116 bits (290), Expect = 3.710e-27 Identity = 66/111 (59.46%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 100 MRRVTSEGLLQHLADSGVPAAQELQR---EREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
M+ +TSE LL L+ G+PAAQELQ + E+ARQ QAASR ALKDA VFGRT +GRQT+QTIL + AYD DEG +P YR+AEILGV PA F+ ARQR + PP
Sbjct: 1 MKSMTSEALLACLSQEGIPAAQELQELQLQLEDARQFQAASREALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLPP 111
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5KQH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH6_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 7.390e-21 Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1 Query: 178 EREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
E E+ARQ QA SRAALKDA VFGRT +GRQT+QTIL + AYD DEG +P YR+AEILGV PA F+ ARQR + PP
Sbjct: 28 ELEDARQFQATSRAALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLPP 109
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 476 |
| Cds size | 474 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927358.9807246-CDS-C-linearis_contig101:490903..491320 | 1622927358.9807246-CDS-C-linearis_contig101:490903..491320 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 490904..491320 - |
| 1690879651.194644-CDS-C-linearis_contig101:490903..491320 | 1690879651.194644-CDS-C-linearis_contig101:490903..491320 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 490904..491320 - |
| 1622927358.9946253-CDS-C-linearis_contig101:493147..493204 | 1622927358.9946253-CDS-C-linearis_contig101:493147..493204 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 493148..493204 - |
| 1690879651.203216-CDS-C-linearis_contig101:493147..493204 | 1690879651.203216-CDS-C-linearis_contig101:493147..493204 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 493148..493204 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.752.1 >prot_C-linearis_contig101.752.1 ID=prot_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=158bp
QCLLLSGGNGSEDSCLREEACDPRDTSAPFLVAMRRVTSEGLLQHLADSG
VPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAY
DVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPPPCRSVFCSR
RAPRSCP* back to topmRNA from alignment at C-linearis_contig101:490904..493204- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig101.752.1 ID=mRNA_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2301bp|location=Sequence derived from alignment at C-linearis_contig101:490904..493204- (Chordaria linearis ClinC8C monoicous)
CAGTGTCTCCTGTTAAGCGGCGGCAACGGGAGTGAAGACTCTTGTCTTCG
CGAAGAGGTGGGTGCCACTTCCGTAAGTTTATGCGTTTGTTCTTCACGGG
ACAAGGACTTTTTTCTTGGACCAATTCCTTGTGCTAAGGTCCAAACCAAA
ACGTGCTTCGCGCTCGCCATGGCTAGAGAAGAAATTAACCCTTTCGTGAC
TAGACCCCACTCTAGCTCCGGTCATAGCTCCGATCGTATTCCGAGCCTTT
TTTACCAGTCAACGCTATATACATTGCCCCGCGCGTTTACGCTGGTGTGT
GTGTCGGTGGTTCTGCGTGTGCTGTTATCTACCAATGCATCAATCCCAGT
CAAAAGCCAGACACTATTATGGATATTGTTGTATACCCTGGCACGTAGAC
AGAGGCTATGTCTTCGACGTTAGTCGAGGTGGTGACACTGTGCGAGCGGG
AGCAGAGAAGCGAGGATGTGCTTCTGTGCTGTAGAGAAGAAAACGTGATA
TCACGTACACACGGCGCTTATGTGGCCAACACACACAGATATAATCCACA
GAGAATGCAGGAGTCCAGACGACGGCAGCTTCCAGAGATGATCAGGAAAG
CTAAGATAGCACGACGACCAGGAGAGATCCACGCGAGAGAGTGAGCTTTA
CGTCCTACGCAGAGAATGCTACGACGACAGTAATTCCTCCGCATAAATAC
GTTACGTCTGAACCGATACATAGAGAGATCTACGATGATCTACGATGAAC
ACAAGAGCAGTGCTACGAACATTGAACCTACATGGTCATGTGCTAACATT
TCCATAACAGTGGCAAAAGTGCGTGACAAAAGTGCGAGGCGGTTGAGATT
TAGTGCGGCAAATCTGCCGCTGCTGGTGCCGTTTCACCCCCCCTGATATC
CAACGAGTGTTGCAGGGCGAGCAAAAAAGAGCAAAAAAGAGAGCGAGACA
AAAAAACTCGGGTGTGGAGCGTACGCCGCACACAGGCAACCAGTTCACCA
TCTTACATATCATCGGGCTTCACAAGCCACATGTGTATGCAGGAATGCCT
GTTGTGCAGCGGCGCAGGGATCAGGAGGCGGTCGCGTGTGGGCCGAAAAA
GAAAAAATCACCCACACGCACGAAAAAAAAGAAAACAGCACCGCACTTTC
GCGTGGTCGCCTCTCTTGTGTACACTGCCTACAAACAGTGGCCCGTGAGC
TACAACGAACACACCCGACGCCCTCTACAGTGTGTCTCTACGAGCTTCGT
TGGGCTACAGCAGTGGGAATCGTTCCCTTCTCTCGGTTGGGTGGGATAAA
AACTCGCACAGCAGGCAGCATCGTCCGTCCGTTAGCTTTTTTTTCGGTTG
ATCGGCTGAAGTAATATTTTGCCCGCGACCATCCCCACACATCCCAAACC
AGCCAAACAGCTACACCTAAAATCTGAGGAGGGCTATGAGTGCTCTCTGA
CGGGTGCATGTCTCTGAAGATGGTGCCTTTCACACTCCTGACTCTGCGTT
GTGCACGCCCGGCACCCTTTAGAGGTGCCGGTTGGGAGACGACCTTATTT
TGTTTTGGCGCGCAAGCAATAATAAATTTGAAATCTGAAAAATTTGTGCG
TGACAAAAAGTTCGTCTCAGGCGCGGCGCAACCTCCCTCACGCATATATT
ATCAGCTCACGCACTTATTTTCAGCTCACGCACTTGTGTGAAGACAACAA
CAACAACAACAACAACAACAACTTATTACCAGGCGTGTGATAACCGTCTA
TTACTACACCGCGGTTGCATCCACATCTTGCAAAATAATTCCAGCCGCAT
GTTGTAGCGCTCCGAGTTTGTCGTTGACTCTCCTCCCCGCACGCTCTCTC
TTGCTGTGCTGCCGCCAAATTACGGCCGCCGCAGGCGTGTGACCCGCGAG
ACACCTCTGCGCCATTCTTGGTCGCGATGAGAAGAGTGACTTCAGAAGGC
CTGCTGCAGCATCTGGCCGACAGCGGAGTGCCGGCAGCGCAGGAGCTGCA
GCGGGAACGAGAGGAAGCGCGGCAGATGCAGGCGGCATCGCGGGCAGCTC
TGAAAGATGCAAATGTGTTTGGCCGAACCAAGGAGGGGAGGCAAACCTTT
CAGACGATCCTCATATCTCATGCCTACGACGTCGACGAGGGGCCGTCAAC
GGTGCCGGATTACCGCAGGGCGGAGATCCTAGGCGTTCATCCGGCTGTCT
TCAACGCCGCACGTCAAAGAAAGGGCGAAATCGCTGCAGCCCGCCCTCCA
CCCTGCCGCAGCGTGTTTTGTTCGCGTCGAGCACCCCGCTCTTGTCCCTA
A back to topCoding sequence (CDS) from alignment at C-linearis_contig101:490904..493204- >mRNA_C-linearis_contig101.752.1 ID=mRNA_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at C-linearis_contig101:490904..493204- (Chordaria linearis ClinC8C monoicous)
CAGTGTCTCCTGTTAAGCGGCGGCAACGGGAGTGAAGACTCTTGTCTTCG
CGAAGAGCAGTGTCTCCTGTTAAGCGGCGGCAACGGGAGTGAAGACTCTT
GTCTTCGCGAAGAGGCGTGTGACCCGCGAGACACCTCTGCGCCATTCTTG
GTCGCGATGAGAAGAGTGACTTCAGAAGGCCTGCTGCAGCATCTGGCCGA
CAGCGGAGTGCCGGCAGCGCAGGAGCTGCAGCGGGAACGAGAGGAAGCGC
GGCAGATGCAGGCGGCATCGCGGGCAGCTCTGAAAGATGCAAATGTGTTT
GGCCGAACCAAGGAGGGGAGGCAAACCTTTCAGACGATCCTCATATCTCA
TGCCTACGACGTCGACGAGGGGCCGTCAACGGTGCCGGATTACCGCAGGG
CGGAGATCCTAGGCGTTCATCCGGCTGTCTTCAACGCCGCACGTCAAAGA
AAGGGCGAAATCGCTGCAGCCCGCCCTCCACCCTGCCGCAGCGTGTTTTG
TTCGCGTCGAGCACCCCGCTCTTGTCCCTAAGCGTGTGACCCGCGAGACA
CCTCTGCGCCATTCTTGGTCGCGATGAGAAGAGTGACTTCAGAAGGCCTG
CTGCAGCATCTGGCCGACAGCGGAGTGCCGGCAGCGCAGGAGCTGCAGCG
GGAACGAGAGGAAGCGCGGCAGATGCAGGCGGCATCGCGGGCAGCTCTGA
AAGATGCAAATGTGTTTGGCCGAACCAAGGAGGGGAGGCAAACCTTTCAG
ACGATCCTCATATCTCATGCCTACGACGTCGACGAGGGGCCGTCAACGGT
GCCGGATTACCGCAGGGCGGAGATCCTAGGCGTTCATCCGGCTGTCTTCA
ACGCCGCACGTCAAAGAAAGGGCGAAATCGCTGCAGCCCGCCCTCCACCC
TGCCGCAGCGTGTTTTGTTCGCGTCGAGCACCCCGCTCTTGTCCCTAA back to top
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