mRNA_C-linearis_contig101.752.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig101.752.1
Unique Name	mRNA_C-linearis_contig101.752.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5KIV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIV8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.090e-31
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 1

Query:  100 MRRVTSEGLLQHLADSGVPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
            M+ + +E LLQ L D+GVPAAQE+ +E  +ARQ QAASRAALKDA VFGRT  GRQT+QTIL +HAYD DEG ST+P YR+AEILGV PA F+ ARQR   +    PP
Sbjct:    1 MKAMNAETLLQSLIDNGVPAAQEIHQELADARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDPAEFSRARQRAKSLQPRVPP 108

[Close]

BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5JI78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI78_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.320e-28
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 1

Query:  100 MRRVTSEGLLQHLADSGVPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFN 378
            M+ + +E LLQ L D+GVPAAQE+ +E  +ARQ QAASRAALKDA VFGRT  GRQT+QTIL +HAYD DEG ST+P YR+AEILGV PA F+
Sbjct:    1 MKAMNAETLLQSLIDNGVPAAQEIHQELADARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDPAEFS 93

[Close]

BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5JIV9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV9_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.710e-27
Identity = 66/111 (59.46%), Postives = 79/111 (71.17%), Query Frame = 1

Query:  100 MRRVTSEGLLQHLADSGVPAAQELQR---EREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
            M+ +TSE LL  L+  G+PAAQELQ    + E+ARQ QAASR ALKDA VFGRT +GRQT+QTIL + AYD DEG   +P YR+AEILGV PA F+ ARQR   +    PP
Sbjct:    1 MKSMTSEALLACLSQEGIPAAQELQELQLQLEDARQFQAASREALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLPP 111

[Close]

BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5KQH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 7.390e-21
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1

Query:  178 EREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
            E E+ARQ QA SRAALKDA VFGRT +GRQT+QTIL + AYD DEG   +P YR+AEILGV PA F+ ARQR   +    PP
Sbjct:   28 ELEDARQFQATSRAALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLPP 109

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot

BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KIV8_9PHAE	3.090e-31	63.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JI78_9PHAE	2.320e-28	67.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JIV9_9PHAE	3.710e-27	59.46	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KQH6_9PHAE	7.390e-21	63.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig101	contig	C-linearis_contig101:490904..493204 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	476
Cds size	474
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927358.9807246-CDS-C-linearis_contig101:490903..491320	1622927358.9807246-CDS-C-linearis_contig101:490903..491320	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 490904..491320 -
1690879651.194644-CDS-C-linearis_contig101:490903..491320	1690879651.194644-CDS-C-linearis_contig101:490903..491320	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 490904..491320 -
1622927358.9946253-CDS-C-linearis_contig101:493147..493204	1622927358.9946253-CDS-C-linearis_contig101:493147..493204	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 493148..493204 -
1690879651.203216-CDS-C-linearis_contig101:493147..493204	1690879651.203216-CDS-C-linearis_contig101:493147..493204	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 493148..493204 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig101.752.1	prot_C-linearis_contig101.752.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig101 490904..493204 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig101:490904..493204-
coding sequence from alignment at C-linearis_contig101:490904..493204-

protein sequence of mRNA_C-linearis_contig101.752.1

>prot_C-linearis_contig101.752.1 ID=prot_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=158bp
QCLLLSGGNGSEDSCLREEACDPRDTSAPFLVAMRRVTSEGLLQHLADSG
VPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAY
DVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPPPCRSVFCSR
RAPRSCP*

mRNA from alignment at C-linearis_contig101:490904..493204-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig101.752.1 ID=mRNA_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2301bp|location=Sequence derived from alignment at C-linearis_contig101:490904..493204- (Chordaria linearis ClinC8C monoicous)
CAGTGTCTCCTGTTAAGCGGCGGCAACGGGAGTGAAGACTCTTGTCTTCG
CGAAGAGGTGGGTGCCACTTCCGTAAGTTTATGCGTTTGTTCTTCACGGG
ACAAGGACTTTTTTCTTGGACCAATTCCTTGTGCTAAGGTCCAAACCAAA
ACGTGCTTCGCGCTCGCCATGGCTAGAGAAGAAATTAACCCTTTCGTGAC
TAGACCCCACTCTAGCTCCGGTCATAGCTCCGATCGTATTCCGAGCCTTT
TTTACCAGTCAACGCTATATACATTGCCCCGCGCGTTTACGCTGGTGTGT
GTGTCGGTGGTTCTGCGTGTGCTGTTATCTACCAATGCATCAATCCCAGT
CAAAAGCCAGACACTATTATGGATATTGTTGTATACCCTGGCACGTAGAC
AGAGGCTATGTCTTCGACGTTAGTCGAGGTGGTGACACTGTGCGAGCGGG
AGCAGAGAAGCGAGGATGTGCTTCTGTGCTGTAGAGAAGAAAACGTGATA
TCACGTACACACGGCGCTTATGTGGCCAACACACACAGATATAATCCACA
GAGAATGCAGGAGTCCAGACGACGGCAGCTTCCAGAGATGATCAGGAAAG
CTAAGATAGCACGACGACCAGGAGAGATCCACGCGAGAGAGTGAGCTTTA
CGTCCTACGCAGAGAATGCTACGACGACAGTAATTCCTCCGCATAAATAC
GTTACGTCTGAACCGATACATAGAGAGATCTACGATGATCTACGATGAAC
ACAAGAGCAGTGCTACGAACATTGAACCTACATGGTCATGTGCTAACATT
TCCATAACAGTGGCAAAAGTGCGTGACAAAAGTGCGAGGCGGTTGAGATT
TAGTGCGGCAAATCTGCCGCTGCTGGTGCCGTTTCACCCCCCCTGATATC
CAACGAGTGTTGCAGGGCGAGCAAAAAAGAGCAAAAAAGAGAGCGAGACA
AAAAAACTCGGGTGTGGAGCGTACGCCGCACACAGGCAACCAGTTCACCA
TCTTACATATCATCGGGCTTCACAAGCCACATGTGTATGCAGGAATGCCT
GTTGTGCAGCGGCGCAGGGATCAGGAGGCGGTCGCGTGTGGGCCGAAAAA
GAAAAAATCACCCACACGCACGAAAAAAAAGAAAACAGCACCGCACTTTC
GCGTGGTCGCCTCTCTTGTGTACACTGCCTACAAACAGTGGCCCGTGAGC
TACAACGAACACACCCGACGCCCTCTACAGTGTGTCTCTACGAGCTTCGT
TGGGCTACAGCAGTGGGAATCGTTCCCTTCTCTCGGTTGGGTGGGATAAA
AACTCGCACAGCAGGCAGCATCGTCCGTCCGTTAGCTTTTTTTTCGGTTG
ATCGGCTGAAGTAATATTTTGCCCGCGACCATCCCCACACATCCCAAACC
AGCCAAACAGCTACACCTAAAATCTGAGGAGGGCTATGAGTGCTCTCTGA
CGGGTGCATGTCTCTGAAGATGGTGCCTTTCACACTCCTGACTCTGCGTT
GTGCACGCCCGGCACCCTTTAGAGGTGCCGGTTGGGAGACGACCTTATTT
TGTTTTGGCGCGCAAGCAATAATAAATTTGAAATCTGAAAAATTTGTGCG
TGACAAAAAGTTCGTCTCAGGCGCGGCGCAACCTCCCTCACGCATATATT
ATCAGCTCACGCACTTATTTTCAGCTCACGCACTTGTGTGAAGACAACAA
CAACAACAACAACAACAACAACTTATTACCAGGCGTGTGATAACCGTCTA
TTACTACACCGCGGTTGCATCCACATCTTGCAAAATAATTCCAGCCGCAT
GTTGTAGCGCTCCGAGTTTGTCGTTGACTCTCCTCCCCGCACGCTCTCTC
TTGCTGTGCTGCCGCCAAATTACGGCCGCCGCAGGCGTGTGACCCGCGAG
ACACCTCTGCGCCATTCTTGGTCGCGATGAGAAGAGTGACTTCAGAAGGC
CTGCTGCAGCATCTGGCCGACAGCGGAGTGCCGGCAGCGCAGGAGCTGCA
GCGGGAACGAGAGGAAGCGCGGCAGATGCAGGCGGCATCGCGGGCAGCTC
TGAAAGATGCAAATGTGTTTGGCCGAACCAAGGAGGGGAGGCAAACCTTT
CAGACGATCCTCATATCTCATGCCTACGACGTCGACGAGGGGCCGTCAAC
GGTGCCGGATTACCGCAGGGCGGAGATCCTAGGCGTTCATCCGGCTGTCT
TCAACGCCGCACGTCAAAGAAAGGGCGAAATCGCTGCAGCCCGCCCTCCA
CCCTGCCGCAGCGTGTTTTGTTCGCGTCGAGCACCCCGCTCTTGTCCCTA
A

Coding sequence (CDS) from alignment at C-linearis_contig101:490904..493204-

>mRNA_C-linearis_contig101.752.1 ID=mRNA_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at C-linearis_contig101:490904..493204- (Chordaria linearis ClinC8C monoicous)
CAGTGTCTCCTGTTAAGCGGCGGCAACGGGAGTGAAGACTCTTGTCTTCG
CGAAGAGCAGTGTCTCCTGTTAAGCGGCGGCAACGGGAGTGAAGACTCTT
GTCTTCGCGAAGAGGCGTGTGACCCGCGAGACACCTCTGCGCCATTCTTG
GTCGCGATGAGAAGAGTGACTTCAGAAGGCCTGCTGCAGCATCTGGCCGA
CAGCGGAGTGCCGGCAGCGCAGGAGCTGCAGCGGGAACGAGAGGAAGCGC
GGCAGATGCAGGCGGCATCGCGGGCAGCTCTGAAAGATGCAAATGTGTTT
GGCCGAACCAAGGAGGGGAGGCAAACCTTTCAGACGATCCTCATATCTCA
TGCCTACGACGTCGACGAGGGGCCGTCAACGGTGCCGGATTACCGCAGGG
CGGAGATCCTAGGCGTTCATCCGGCTGTCTTCAACGCCGCACGTCAAAGA
AAGGGCGAAATCGCTGCAGCCCGCCCTCCACCCTGCCGCAGCGTGTTTTG
TTCGCGTCGAGCACCCCGCTCTTGTCCCTAAGCGTGTGACCCGCGAGACA
CCTCTGCGCCATTCTTGGTCGCGATGAGAAGAGTGACTTCAGAAGGCCTG
CTGCAGCATCTGGCCGACAGCGGAGTGCCGGCAGCGCAGGAGCTGCAGCG
GGAACGAGAGGAAGCGCGGCAGATGCAGGCGGCATCGCGGGCAGCTCTGA
AAGATGCAAATGTGTTTGGCCGAACCAAGGAGGGGAGGCAAACCTTTCAG
ACGATCCTCATATCTCATGCCTACGACGTCGACGAGGGGCCGTCAACGGT
GCCGGATTACCGCAGGGCGGAGATCCTAGGCGTTCATCCGGCTGTCTTCA
ACGCCGCACGTCAAAGAAAGGGCGAAATCGCTGCAGCCCGCCCTCCACCC
TGCCGCAGCGTGTTTTGTTCGCGTCGAGCACCCCGCTCTTGTCCCTAA