mRNA_C-linearis_contig101.752.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5KIV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIV8_9PHAE) HSP 1 Score: 127 bits (320), Expect = 3.090e-31 Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 1 Query: 100 MRRVTSEGLLQHLADSGVPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
M+ + +E LLQ L D+GVPAAQE+ +E +ARQ QAASRAALKDA VFGRT GRQT+QTIL +HAYD DEG ST+P YR+AEILGV PA F+ ARQR + PP
Sbjct: 1 MKAMNAETLLQSLIDNGVPAAQEIHQELADARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDPAEFSRARQRAKSLQPRVPP 108
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5JI78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI78_9PHAE) HSP 1 Score: 119 bits (299), Expect = 2.320e-28 Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 1 Query: 100 MRRVTSEGLLQHLADSGVPAAQELQREREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFN 378
M+ + +E LLQ L D+GVPAAQE+ +E +ARQ QAASRAALKDA VFGRT GRQT+QTIL +HAYD DEG ST+P YR+AEILGV PA F+
Sbjct: 1 MKAMNAETLLQSLIDNGVPAAQEIHQELADARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDPAEFS 93
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5JIV9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV9_9PHAE) HSP 1 Score: 116 bits (290), Expect = 3.710e-27 Identity = 66/111 (59.46%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 100 MRRVTSEGLLQHLADSGVPAAQELQR---EREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
M+ +TSE LL L+ G+PAAQELQ + E+ARQ QAASR ALKDA VFGRT +GRQT+QTIL + AYD DEG +P YR+AEILGV PA F+ ARQR + PP
Sbjct: 1 MKSMTSEALLACLSQEGIPAAQELQELQLQLEDARQFQAASREALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLPP 111
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Match: A0A6H5KQH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH6_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 7.390e-21 Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1 Query: 178 EREEARQMQAASRAALKDANVFGRTKEGRQTFQTILISHAYDVDEGPSTVPDYRRAEILGVHPAVFNAARQRKGEIAAARPP 423
E E+ARQ QA SRAALKDA VFGRT +GRQT+QTIL + AYD DEG +P YR+AEILGV PA F+ ARQR + PP
Sbjct: 28 ELEDARQFQATSRAALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLPP 109 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.752.1 >prot_C-linearis_contig101.752.1 ID=prot_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=158bp QCLLLSGGNGSEDSCLREEACDPRDTSAPFLVAMRRVTSEGLLQHLADSGback to top mRNA from alignment at C-linearis_contig101:490904..493204- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.752.1 ID=mRNA_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2301bp|location=Sequence derived from alignment at C-linearis_contig101:490904..493204- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:490904..493204- >mRNA_C-linearis_contig101.752.1 ID=mRNA_C-linearis_contig101.752.1|Name=mRNA_C-linearis_contig101.752.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at C-linearis_contig101:490904..493204- (Chordaria linearis ClinC8C monoicous)back to top |