mRNA_C-linearis_contig101.732.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: D8LE10_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE10_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.690e-50 Identity = 90/108 (83.33%), Postives = 101/108 (93.52%), Query Frame = 2 Query: 53 MRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAAASAADKG 376
MR S+FL+SAALLIGSA+DVLGGA PVSVKVTLRGKKYDV+DATSVEDV+KSVEEQAGLAKEQQSVLFKGSLLK EL+LEEAG++DGDTVNIVPSKKPK + +A + G
Sbjct: 1 MRPSSFLISAALLIGSAVDVLGGAGPVSVKVTLRGKKYDVQDATSVEDVQKSVEEQAGLAKEQQSVLFKGSLLKPELELEEAGVSDGDTVNIVPSKKPKTSVAAVEAG 108
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A836CH29_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH29_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.200e-21 Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 2 Query: 65 NFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAAASAA 367
+ LLSA ++ + + L A P++V VTLRGKKY V +SV D++ V+E+AGL+ EQQSVLFKG LL + DL G++DGDT+N+VPSKKPKA +AA
Sbjct: 4 SLLLSAGAVLAAVVPSLASA-PLNVVVTLRGKKYQV-SGSSVSDIQAEVQEKAGLSAEQQSVLFKGKLLAAGDDLSTVGVSDGDTINVVPSKKPKAERTAA 102
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: W7T2R4_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2R4_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.450e-15 Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 2 Query: 47 RTMRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSK---------KPKAA---ASAADKGFAVGAG 394
R + ++ FLL LL ++ G A PV+V VTLRGKKYD+ A SV+D++ +E ++GL QQ++LFKG L + L AG+ +GDT+NIVP+K +P+A+ ASA D+ A AG
Sbjct: 4 RKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDL-SAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAG 130
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A7S2N0G5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0G5_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.490e-14 Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 2 Query: 44 NRTMRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPS 337
NR++ S+ LL G+ V+ G+ P +VKVTLRGK+Y + + ++V +++K VEEQAGL +Q VLF G LK LE+ G+ DG +NIVP+
Sbjct: 3 NRSLISALSSALLVLLYGAIDTVVEGSKPFNVKVTLRGKRYTIPNVSTVRELQKGVEEQAGLTPAKQGVLFGGKKLKPSDVLEDMGVEDGSLINIVPT 100
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A7S2WG81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG81_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 4.300e-14 Identity = 38/75 (50.67%), Postives = 62/75 (82.67%), Query Frame = 2 Query: 131 VSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAA 355
++V TLRGKK+DV A++V+++R+++E +AG+ +++QSVLFKG L ++ LE+AG+++GDT+N+VP K PKAA
Sbjct: 29 LNVVCTLRGKKFDVA-ASNVQEIREALEAKAGIEQDRQSVLFKGKKLDADQILEDAGVSEGDTINVVPLKAPKAA 102
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: B7G5I5_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5I5_PHATC) HSP 1 Score: 67.4 bits (163), Expect = 1.040e-10 Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 2 Query: 53 MRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAG-LAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKK 343
MR+ L +A L+G + P +V+VTLRGKKYDV D +V+D++ +EE +G LA +Q VLF G L+S L + G+ADG +NIVPS K
Sbjct: 1 MRTVFTLFLSATLLGRWLAAASAPVP-NVQVTLRGKKYDVTDVRTVQDLQDRIEEVSGILAPQQGRVLFDGKRLESTDVLADVGVADGAQLNIVPSSK 97
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A7S2Y1L4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1L4_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 5.810e-10 Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2 Query: 131 VSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSV-LFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAAASAADKGFA 382
+ V VTL+G++Y V AT+V D++ +E+QA L Q V LFKG +L E DLE G+ GD +N+VPS+KP+ AAS + G A
Sbjct: 23 LDVFVTLKGQRYSV-TATAVGDIKDELEKQAALDPSQDFVVLFKGKVLSPEDDLEAEGVKSGDIINMVPSRKPRPAASPSSVGAA 106
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A448YZF6_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZF6_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 6.930e-7 Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 2 Query: 110 VLGGAN-----PVS-VKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELD--LEEAGIADGDTVNIVPSKK 343
+LGGA+ PVS V VTL+GKKY + D T++ ++++ +EE +G+ +Q + SE D L EAG+ +GD +N VP+KK
Sbjct: 18 LLGGASAAPPTPVSNVHVTLKGKKYQIDDVTTLAELQERLEEHSGIPPSKQGKILHNGKRLSESDDGLSEAGVQEGDQLNCVPAKK 103 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.732.1 >prot_C-linearis_contig101.732.1 ID=prot_C-linearis_contig101.732.1|Name=mRNA_C-linearis_contig101.732.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp MRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRback to top mRNA from alignment at C-linearis_contig101:207735..211038+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.732.1 ID=mRNA_C-linearis_contig101.732.1|Name=mRNA_C-linearis_contig101.732.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3304bp|location=Sequence derived from alignment at C-linearis_contig101:207735..211038+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:207735..211038+ >mRNA_C-linearis_contig101.732.1 ID=mRNA_C-linearis_contig101.732.1|Name=mRNA_C-linearis_contig101.732.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig101:207735..211038+ (Chordaria linearis ClinC8C monoicous)back to top |