mRNA_C-linearis_contig101.732.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig101.732.1
Unique Name	mRNA_C-linearis_contig101.732.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: D8LE10_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE10_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.690e-50
Identity = 90/108 (83.33%), Postives = 101/108 (93.52%), Query Frame = 2

Query:   53 MRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAAASAADKG 376
            MR S+FL+SAALLIGSA+DVLGGA PVSVKVTLRGKKYDV+DATSVEDV+KSVEEQAGLAKEQQSVLFKGSLLK EL+LEEAG++DGDTVNIVPSKKPK + +A + G
Sbjct:    1 MRPSSFLISAALLIGSAVDVLGGAGPVSVKVTLRGKKYDVQDATSVEDVQKSVEEQAGLAKEQQSVLFKGSLLKPELELEEAGVSDGDTVNIVPSKKPKTSVAAVEAG 108

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BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A836CH29_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH29_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.200e-21
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 2

Query:   65 NFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAAASAA 367
            + LLSA  ++ + +  L  A P++V VTLRGKKY V   +SV D++  V+E+AGL+ EQQSVLFKG LL +  DL   G++DGDT+N+VPSKKPKA  +AA
Sbjct:    4 SLLLSAGAVLAAVVPSLASA-PLNVVVTLRGKKYQV-SGSSVSDIQAEVQEKAGLSAEQQSVLFKGKLLAAGDDLSTVGVSDGDTINVVPSKKPKAERTAA 102

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BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: W7T2R4_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2R4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.450e-15
Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 2

Query:   47 RTMRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSK---------KPKAA---ASAADKGFAVGAG 394
            R + ++ FLL   LL     ++ G A PV+V VTLRGKKYD+  A SV+D++  +E ++GL   QQ++LFKG  L +   L  AG+ +GDT+NIVP+K         +P+A+   ASA D+  A  AG
Sbjct:    4 RKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDL-SAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAG 130

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BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A7S2N0G5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0G5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.490e-14
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 2

Query:   44 NRTMRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPS 337
            NR++ S+       LL G+   V+ G+ P +VKVTLRGK+Y + + ++V +++K VEEQAGL   +Q VLF G  LK    LE+ G+ DG  +NIVP+
Sbjct:    3 NRSLISALSSALLVLLYGAIDTVVEGSKPFNVKVTLRGKRYTIPNVSTVRELQKGVEEQAGLTPAKQGVLFGGKKLKPSDVLEDMGVEDGSLINIVPT 100

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BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A7S2WG81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG81_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.300e-14
Identity = 38/75 (50.67%), Postives = 62/75 (82.67%), Query Frame = 2

Query:  131 VSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAA 355
            ++V  TLRGKK+DV  A++V+++R+++E +AG+ +++QSVLFKG  L ++  LE+AG+++GDT+N+VP K PKAA
Sbjct:   29 LNVVCTLRGKKFDVA-ASNVQEIREALEAKAGIEQDRQSVLFKGKKLDADQILEDAGVSEGDTINVVPLKAPKAA 102

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BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: B7G5I5_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5I5_PHATC)

HSP 1 Score: 67.4 bits (163), Expect = 1.040e-10
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 2

Query:   53 MRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAG-LAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKK 343
            MR+   L  +A L+G  +       P +V+VTLRGKKYDV D  +V+D++  +EE +G LA +Q  VLF G  L+S   L + G+ADG  +NIVPS K
Sbjct:    1 MRTVFTLFLSATLLGRWLAAASAPVP-NVQVTLRGKKYDVTDVRTVQDLQDRIEEVSGILAPQQGRVLFDGKRLESTDVLADVGVADGAQLNIVPSSK 97

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BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A7S2Y1L4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1L4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.810e-10
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2

Query:  131 VSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSV-LFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAAASAADKGFA 382
            + V VTL+G++Y V  AT+V D++  +E+QA L   Q  V LFKG +L  E DLE  G+  GD +N+VPS+KP+ AAS +  G A
Sbjct:   23 LDVFVTLKGQRYSV-TATAVGDIKDELEKQAALDPSQDFVVLFKGKVLSPEDDLEAEGVKSGDIINMVPSRKPRPAASPSSVGAA 106

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BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A448YZF6_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZF6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.930e-7
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 2

Query:  110 VLGGAN-----PVS-VKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELD--LEEAGIADGDTVNIVPSKK 343
            +LGGA+     PVS V VTL+GKKY + D T++ ++++ +EE +G+   +Q  +       SE D  L EAG+ +GD +N VP+KK
Sbjct:   18 LLGGASAAPPTPVSNVHVTLKGKKYQIDDVTTLAELQERLEEHSGIPPSKQGKILHNGKRLSESDDGLSEAGVQEGDQLNCVPAKK 103

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot

BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LE10_ECTSI	1.690e-50	83.33	Ubiquitin-like domain-containing protein n=2 Tax=E...	[more]
A0A836CH29_9STRA	1.200e-21	53.47	Ubiquitin-like domain-containing protein n=1 Tax=T...	[more]
W7T2R4_9STRA	2.450e-15	42.19	Ubiquitin-like domain-containing protein n=2 Tax=M...	[more]
A0A7S2N0G5_9STRA	1.490e-14	43.88	Hypothetical protein n=1 Tax=Helicotheca tamesis T...	[more]
A0A7S2WG81_9STRA	4.300e-14	50.67	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
B7G5I5_PHATC	1.040e-10	44.90	Predicted protein n=3 Tax=Phaeodactylum tricornutu...	[more]
A0A7S2Y1L4_9STRA	5.810e-10	47.06	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A448YZF6_9STRA	6.930e-7	40.70	Ubiquitin-like domain-containing protein n=1 Tax=P...	[more]

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig101.732.1	prot_C-linearis_contig101.732.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig101 207787..211038 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927362.4613817-UTR-C-linearis_contig101:207734..207786	1622927362.4613817-UTR-C-linearis_contig101:207734..207786	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig101 207735..207786 +
1690879653.5074453-UTR-C-linearis_contig101:207734..207786	1690879653.5074453-UTR-C-linearis_contig101:207734..207786	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig101 207735..207786 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927362.4739592-CDS-C-linearis_contig101:207786..207852	1622927362.4739592-CDS-C-linearis_contig101:207786..207852	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 207787..207852 +
1690879653.5212004-CDS-C-linearis_contig101:207786..207852	1690879653.5212004-CDS-C-linearis_contig101:207786..207852	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 207787..207852 +
1622927362.4864213-CDS-C-linearis_contig101:209464..209590	1622927362.4864213-CDS-C-linearis_contig101:209464..209590	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 209465..209590 +
1690879653.5302296-CDS-C-linearis_contig101:209464..209590	1690879653.5302296-CDS-C-linearis_contig101:209464..209590	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 209465..209590 +
1622927362.505837-CDS-C-linearis_contig101:210301..210421	1622927362.505837-CDS-C-linearis_contig101:210301..210421	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 210302..210421 +
1690879653.538879-CDS-C-linearis_contig101:210301..210421	1690879653.538879-CDS-C-linearis_contig101:210301..210421	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 210302..210421 +
1622927362.522084-CDS-C-linearis_contig101:210987..211038	1622927362.522084-CDS-C-linearis_contig101:210987..211038	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 210988..211038 +
1690879653.547215-CDS-C-linearis_contig101:210987..211038	1690879653.547215-CDS-C-linearis_contig101:210987..211038	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig101 210988..211038 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig101:207735..211038+
coding sequence from alignment at C-linearis_contig101:207735..211038+

protein sequence of mRNA_C-linearis_contig101.732.1

>prot_C-linearis_contig101.732.1 ID=prot_C-linearis_contig101.732.1|Name=mRNA_C-linearis_contig101.732.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp
MRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVR
KSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKA
AASAADKGFAVGAGGDTEEVG

mRNA from alignment at C-linearis_contig101:207735..211038+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig101.732.1 ID=mRNA_C-linearis_contig101.732.1|Name=mRNA_C-linearis_contig101.732.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3304bp|location=Sequence derived from alignment at C-linearis_contig101:207735..211038+ (Chordaria linearis ClinC8C monoicous)
GTGATTTACGAGGACAACAGCGTGGCCCTCTTCTTCGAAAGACAACAGAA
CCATGCGATCTAGCAACTTTCTTCTCTCGGCGGCGCTCCTTATCGGTAGC
GCGATCGATGTGCTTGGGGTGAGTTCGAGTAAAAGCAGCAGTTGGTACAT
CCAGACCACATGCTCTGATGCTCTGGAGGTTCGTGAAGACGAGCTTTCAT
GTTGGACAACCTCTGTTCGTGTGGGCGTCCCTCCACGTGCATGGGCCATG
ACTCTGGTGGAGTTGTGTGGTGCTTGGGTCGGGAAATTGTTGCAAATGTA
CGGCTCCCCTTGTGGTTTTTTGCTTGCAGGGCGGGCGGCTGCAACATTTA
TGTGAGGTTGCCGTGTCCTCGGGACACGTGTCCTGACCGCATCACACGCG
GCCGACACACGGACGGTGGTTTTCTTAGCGACGAGTATCAAGTGACACGG
GATGGGCTCACACTTTCAGCAGTCATTGTTCTTGGTGTTCAAGAAGGATA
GATGCGTCAGGCCCAATCATATACCCGCCAACCCGGCTGGCTCACCCCAT
CAGTGCGGGACTCTCTCGGCCTTCCACGTACGCAGGGCTGTATGTTGCAC
TCAGCCTCTACTACTATAAATAGACCTCTGCTATAAATCTGCAGCGGTCG
CTTTAGGTGGGATATTCTCGACGGGGGGGTACCTTGCGCAGCGGACACTA
GGTCGGAAAAAACACTGTTGTCGAGCCTCGCTGCTGTGCATGTGCGGAGC
GTATCCTTGTTCGACTTTCTTACAGCTACCCCGCCCCGTAGTTGGGTTGA
ACCTGCCGCACGTGTATCAGTAGTTGAGGCTGGTTGTGCCGGGTCCAAGC
GTACGGTGCCCTCCGTCTCACGTGACACGGGGAACCAAAGGGAGAGATAG
GAAAGTATTCAATGGAGAGGTCAATATTCTGCAGCATGTGCTCCAAGTTC
CAAGCTGGGCCCTTTCTCGTGGAACGATGTTCGGTTTGAAGGCCAGTTAT
TCTCGCTCTTGTCTGTGGATACACTCAGAAGAGGGTTTTCGATTTTCGTC
TTTCTTGGTCAAGTGATGGGCGCTGCGGTGCCGTGTTCGTCGCGGAAAGA
AGAAACCTGTTAACCTCTTGTACTGGCTTAGAGTGGAGCCCAAATAATGG
ACAAGTTCGGTGCTTCAAACGCGAGAATGGATCATTAATGCTTCGGTAGC
CCACAACAAGCAAGAATGTCGGGCGCGCAGAAAAGTCACCCTACCTAATT
CGTCCGGCAGCTACACGCGAGCGAGGACGCCGGACCACACAGACGGCAAG
AACCGATCTCATAGATGGCGATTTGGGGCATATTTTGGACCCCTCCTCGG
CATGTGAGCGCCAAATGGGAGCTGCCAACGAACGCAGCTTAATCCGCGTA
GAAGCGGGAGTAGGCAATGAAGGGTCAACGAACGATCGTGGACCCACCAC
GCTAACGCTGTCGTCACATTTCACTACTGCTGCTGCTATTGATACAGAAT
TTTCACCTAGCACAGATGGACGTGCACAGTCCAAGGGCTAGTCCTGTAAC
GACAAGCCACGTTAAACATTAATTATCACACCTTTGATAACCCCCCGCAA
CACCTGACCTATTGGTACACCCCAGTTGTGCATGTGACGATCCAGCGCAA
GATGCAACATTTCAAAGGTAATGTGTGTACAATACTGAGGTTCGAACATC
TCGCGTTCTCGTCCTGCCTTTCGCTTGCAGGGCGCCAATCCCGTGAGCGT
GAAGGTGACGCTGCGCGGCAAGAAGTACGACGTGAAGGACGCCACGAGCG
TCGAGGACGTCCGGAAGTCTGTCGAGGAGCAGGCTGGCCTTGCCAAGGAG
CAGCAGGTATTTTTTTGGTATGCACAACGTGCGCCCGTTGAATTCGATGC
TATATGGGTTGACATCCTACGTACATCATTTCTACAAGGCTCGTGTGTGG
ATGTCTTTTTGTTGCCTCCTCGAATAAGTGGGAACCGATACAATACCTAA
ATATATGGTAGCGACACCAAGCCTGACCGTACAGATTCTACAGCCGTGGC
AGGCACCGCGTAGGCGCCTTGCCATAAATTGCTTTATCCTATCTTGCGCC
TCGCGATTGGCAATGATCTCGCAGAATGAATCTTTAGCAGTATCGAGCTT
CGCGAGCGAGATGCTCTGTTCCAGTAATCGCAACGGTTGAGTTTTCTGAG
TTCGAGCGACGGTCTGTCGTTTCTGGTGGTAAACATGACATTGCATCCGT
TTCTCCGCCGTGCTTTGACAGGGGAGAGACGTTTGAACAATCCCCTGCAA
ACTGGGGTTCGATCTTTTTCGTCTCCTACGTGGATGGAAACAAAGAAAAT
GGGTTTCCCCTGATACGGAAACCTGGGGAAACTTGAGGGTCTGTTATTAA
CCGCGTCAGCACAAAGAAAGATCTCCCAACATTATACTTTTATGTGTTCG
GGAGGTTTTCTGCTCCTCCTCTCACCTCTATTTCTGTTGTCGTGTGCCCT
TCCCCCTGCGCCGCCGCGGGTGTGTTGCTCGCATTTCGGTGGCTTGCGTG
TTGGTTCGTTGGATCAGTCCGTTTTGTTCAAGGGTAGCCTCCTCAAGTCG
GAGTTGGATCTGGAAGAGGCGGGCATCGCAGACGGAGACACGGTGAACAT
CGTCCCGAGCAAGAAGCCCAAGGCGGCTGCGTCGGCGGTAAGCTGGCTCG
CTCTCACACCTGGCCTGACCCGACTTTGGTAAAACTCTTGCCTGCGATTT
TCTCCTTTCTCCTGTTGTGTAGTTCCGTTCTGTTCGTTCGTTGTAACTTA
ACTTCATCGATGGCCTGGCAGGCAATCCACCGGACGCACCGCGAGGGCCT
GGGCGGGGTATGTTGCATGTTGGTTTGGCGAGTTCACGTACGAAAAAGAC
AGTTCCTTCCGCAGATTCAGATCGACGCGGTTACTCGATTTTGCTAGAAG
CCCCCCCCCCCCAGCTTCCCCAGCTGGATTGGGGTGTCGTCGGTTCGGTC
AAAACGAAAAATTTCACAAGAGGGCGTGGTGGTGATGATATTTACATCGT
GCAGTCATTCAGCTGCGCCATCGGCGCTGTACAGCAGTACAGTACCGAGG
AGGCGTTTCGCTCAGCCGGGGCTACACCAGTAATTACACCTTTGTTTCCA
AGGGTGTTGGGTGTTGCTTGCACGTGGTTGGCTGTTCTGATTCGCGATCT
GTTGCTTCTTTCGCGTTCCGGCCGGCGGTGCGGTGTTCGGTGGTGCTCCA
CAGGCCGACAAGGGGTTTGCCGTTGGCGCGGGCGGGGACACGGAGGAGGT
GGGG

Coding sequence (CDS) from alignment at C-linearis_contig101:207735..211038+

>mRNA_C-linearis_contig101.732.1 ID=mRNA_C-linearis_contig101.732.1|Name=mRNA_C-linearis_contig101.732.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig101:207735..211038+ (Chordaria linearis ClinC8C monoicous)
ATGCGATCTAGCAACTTTCTTCTCTCGGCGGCGCTCCTTATCGGTAGCGC
GATCGATGTGCTTGGGATGCGATCTAGCAACTTTCTTCTCTCGGCGGCGC
TCCTTATCGGTAGCGCGATCGATGTGCTTGGGGGCGCCAATCCCGTGAGC
GTGAAGGTGACGCTGCGCGGCAAGAAGTACGACGTGAAGGACGCCACGAG
CGTCGAGGACGTCCGGAAGTCTGTCGAGGAGCAGGCTGGCCTTGCCAAGG
AGCAGCAGGGCGCCAATCCCGTGAGCGTGAAGGTGACGCTGCGCGGCAAG
AAGTACGACGTGAAGGACGCCACGAGCGTCGAGGACGTCCGGAAGTCTGT
CGAGGAGCAGGCTGGCCTTGCCAAGGAGCAGCAGTCCGTTTTGTTCAAGG
GTAGCCTCCTCAAGTCGGAGTTGGATCTGGAAGAGGCGGGCATCGCAGAC
GGAGACACGGTGAACATCGTCCCGAGCAAGAAGCCCAAGGCGGCTGCGTC
GGCGTCCGTTTTGTTCAAGGGTAGCCTCCTCAAGTCGGAGTTGGATCTGG
AAGAGGCGGGCATCGCAGACGGAGACACGGTGAACATCGTCCCGAGCAAG
AAGCCCAAGGCGGCTGCGTCGGCGGCCGACAAGGGGTTTGCCGTTGGCGC
GGGCGGGGACACGGAGGAGGTGGGGGCCGACAAGGGGTTTGCCGTTGGCG
CGGGCGGGGACACGGAGGAGGTGGGG