mRNA_C-linearis_contig101.709.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Match: D7FIE9_ECTSI (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE9_ECTSI) HSP 1 Score: 297 bits (760), Expect = 8.110e-96 Identity = 142/194 (73.20%), Postives = 158/194 (81.44%), Query Frame = 1 Query: 154 GRVSASGHDVTRLAQPTSQLAKDRKLSIKQRYVVGGGTEPPFSGRFTNGVKYNTKRRGTFNCIVCDLPAYASSSKFKSGTGWPSFYEPIDPDHVWETTDVSHGMVRKEVKCVRCHAHQGHVFNDGPQPTGKRYCVNAASLTFKAGTGEDQGPSHGLTAGLVRSISRRLRRKKKV---------EEPPATAPSSA 708
G VSASG+DVTR + T+QLA++R LSIKQRYVV GGTEPPFSGRF+NGV+Y+TKRRGTFNC VCDLPAY+SSSKF SGTGWPSFYE IDPDHVWETTD+S GMVRKEVKC RCHAHQGHVFNDGP+PTGKRYCVNAASLTFKA GE Q PSHG+ AG V +SR LR + K EE P+ P+ A
Sbjct: 17 GAVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAAHGEGQVPSHGIAAGFVDMLSRHLRIRTKNKGGKEGAEGEEEPSARPTVA 210
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Match: A0A6H5JXE9_9PHAE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE9_9PHAE) HSP 1 Score: 283 bits (723), Expect = 3.030e-90 Identity = 130/173 (75.14%), Postives = 149/173 (86.13%), Query Frame = 1 Query: 154 GRVSASGHDVTRLAQPTSQLAKDRKLSIKQRYVVGGGTEPPFSGRFTNGVKYNTKRRGTFNCIVCDLPAYASSSKFKSGTGWPSFYEPIDPDHVWETTDVSHGMVRKEVKCVRCHAHQGHVFNDGPQPTGKRYCVNAASLTFKAGTGEDQGPSHGLTAGLVRSISRRLRRKKK 672
G VSASG+DVTR + T+QLA++R LS+KQRYVV GGTEPPFSGRF+NGV+Y+TKRRGTF+C VCDLPAY+SSSKF SGTGWPSFYE +DPDHVWETTD+S GMVRKEVKC RCHAHQGHVFNDGP+PTGKRYCVNAASLTFKA +D+ PS G+ G V +SR LR + K
Sbjct: 16 GTVSASGYDVTRRKKSTAQLARERSLSVKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFDCAVCDLPAYSSSSKFNSGTGWPSFYETVDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAAHAQDRVPSGGI--GFVDMLSRHLRMRTK 186
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Match: Q0VPB9_ALCBS (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) TaxID=393595 RepID=Q0VPB9_ALCBS) HSP 1 Score: 169 bits (428), Expect = 3.140e-47 Identity = 77/143 (53.85%), Postives = 107/143 (74.83%), Query Frame = 1 Query: 160 VSASGHDVTRLAQPTSQLAKDRKLSIKQRYVV-GGGTEPPFSGRFTNGVKYNTKRRGTFNCIVCDLPAYASSSKFKSGTGWPSFYEPIDPDHVWETTDVSHGMVRKEVKCVRCHAHQGHVFNDGPQPTGKRYCVNAASLTFKA 585
+SASG D+T L++ Q A+ + L+ ++R+++ GTEPPF G + K GT++C +CDLP +AS +KF+SGTGWPSFY+P DP+H+ E +D SHGM+R E++C RC +HQGHVF DGP PTG+RYC+N+ASLTFKA
Sbjct: 5 LSASGFDLTPLSEEEKQ-ARAQTLTEEERHILLNQGTEPPFCGGLLDN-----KDAGTYHCKLCDLPLFASDAKFESGTGWPSFYQPYDPEHIRELSDRSHGMLRVEIRCARCDSHQGHVFPDGPPPTGQRYCLNSASLTFKA 141
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Match: B4X305_9GAMM (Peptide methionine sulfoxide reductase MsrB n=5 Tax=unclassified Alcanivorax TaxID=2638842 RepID=B4X305_9GAMM) HSP 1 Score: 168 bits (426), Expect = 6.590e-47 Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 1 Query: 160 VSASGHDVTRLAQPTSQLAKDRKLSIKQRYVV-GGGTEPPFSGRFTNGVKYNTKRRGTFNCIVCDLPAYASSSKFKSGTGWPSFYEPIDPDHVWETTDVSHGMVRKEVKCVRCHAHQGHVFNDGPQPTGKRYCVNAASLTFKA 585
+SASG D+T L++ Q A+ R LS ++R ++ GTEPPF G + K GT++C +CDLP + SS+KF+SGTGWPSFYEP DP H+ E D SHGMVR E++C RC HQGHVF DGP PTG+RYC+N+AS+ FKA
Sbjct: 5 LSASGFDLTPLSEEEKQ-ARARSLSEEERRILLNQGTEPPFCGGLLDN-----KDDGTYHCKLCDLPLFTSSAKFESGTGWPSFYEPFDPQHIRELHDSSHGMVRVEIRCARCDGHQGHVFPDGPPPTGQRYCLNSASMVFKA 141
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Match: A0A2E9TLR4_9GAMM (Peptide methionine sulfoxide reductase MsrB n=6 Tax=Alcanivorax TaxID=59753 RepID=A0A2E9TLR4_9GAMM) HSP 1 Score: 166 bits (420), Expect = 4.850e-46 Identity = 72/141 (51.06%), Postives = 97/141 (68.79%), Query Frame = 1 Query: 163 SASGHDVTRLAQPTSQLAKDRKLSIKQRYVVGGGTEPPFSGRFTNGVKYNTKRRGTFNCIVCDLPAYASSSKFKSGTGWPSFYEPIDPDHVWETTDVSHGMVRKEVKCVRCHAHQGHVFNDGPQPTGKRYCVNAASLTFKA 585
SASGHD+T L+ Q + + ++R ++ GTEPPF G + K G ++C +C+LP +A+S+KF+SGTGWPSFY+P DP+H+ E D SHGMVR E++C RC H GHVF DGP PTG RYC+N+AS+ FKA
Sbjct: 6 SASGHDLTPLSDTEKQQRAESLTAEERRILLNQGTEPPFCGGLLDN-----KENGVYHCKLCELPLFAASAKFESGTGWPSFYQPFDPEHIRELRDTSHGMVRVEIRCARCDGHLGHVFPDGPPPTGLRYCLNSASMVFKA 141
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Match: A0A7G2S6Q2_9GAMM (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Alcanivorax sp. TaxID=1872427 RepID=A0A7G2S6Q2_9GAMM) HSP 1 Score: 163 bits (412), Expect = 7.470e-45 Identity = 70/143 (48.95%), Postives = 96/143 (67.13%), Query Frame = 1 Query: 163 SASGHDVTRLAQPTSQLAKDRKLSIKQRYVVGGGTEPPFSGRFTNGVKYNTKRRGTFNCIVCDLPAYASSSKFKSGTGWPSFYEPIDPDHVWETTDVSHGMVRKEVKCVRCHAHQGHVFNDGPQPTGKRYCVNAASLTFKAGT 591
SASGHD+T L+ Q + ++R ++ GTEPPF G + + G ++C +CDLP +++++KF+SGTGWPSFY+P DP+H+ E D SHGM R E++C RC H GHVF DGP PTG RYC+N+AS+ FKA T
Sbjct: 6 SASGHDLTPLSDAEKQQRAEHLTDEEKRILLNQGTEPPFCGGLLDN-----REDGAYHCKLCDLPLFSANAKFESGTGWPSFYQPFDPEHIRELHDTSHGMTRVEIRCARCDGHLGHVFPDGPPPTGLRYCLNSASMVFKAST 143
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Match: UPI001D1954BC (peptide-methionine (R)-S-oxide reductase MsrB n=3 Tax=Alcanivorax TaxID=59753 RepID=UPI001D1954BC) HSP 1 Score: 162 bits (410), Expect = 1.380e-44 Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 1 Query: 160 VSASGHDVTRLAQPTSQLAKDRKLSIKQRYVVGGGTEPPFSGRFTNGVKYNTKRRGTFNCIVCDLPAYASSSKFKSGTGWPSFYEPIDPDHVWETTDVSHGMVRKEVKCVRCHAHQGHVFNDGPQPTGKRYCVNAASLTFKAG 588
SASGHD+T L Q + ++R ++ GTEPPF G + K GT+ C +C LP + S KF+SGTGWPSFY+P+DP+HV E D SHGMVR E++C RC H GHVF DGP PTG RYC+N+ASL F+AG
Sbjct: 3 TSASGHDLTPLTDAEKQQRAAGLTAEERRILLNQGTEPPFCGGLLDN-----KESGTYLCKLCHLPLFRSDEKFESGTGWPSFYQPVDPEHVKELRDDSHGMVRTEIRCARCDGHLGHVFPDGPPPTGLRYCLNSASLVFEAG 140
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Match: A0A2E5TEI8_9GAMM (Peptide methionine sulfoxide reductase MsrB n=7 Tax=Alcanivorax TaxID=59753 RepID=A0A2E5TEI8_9GAMM) HSP 1 Score: 159 bits (402), Expect = 1.980e-43 Identity = 72/141 (51.06%), Postives = 90/141 (63.83%), Query Frame = 1 Query: 160 VSASGHDVTRLAQPTSQLAKDRKLSIKQRYVVGGGTEPPFSGRFTNGVKYNTKRRGTFNCIVCDLPAYASSSKFKSGTGWPSFYEPIDPDHVWETTDVSHGMVRKEVKCVRCHAHQGHVFNDGPQPTGKRYCVNAASLTFK 582
SASGHD+T L Q + ++R ++ GTEPPF G + K GT+ C +C LP + S KF+SGTGWPSF+ P DPDHV E D SHGMVR E++C RC H GHVF DGP PTG+RYC+N+ASL F+
Sbjct: 3 TSASGHDLTPLTDAEKQQRAADLTTEERRILLNQGTEPPFCGGLLDN-----KEAGTYACKLCHLPLFRSDDKFESGTGWPSFFRPADPDHVRELQDASHGMVRTEIRCARCDGHLGHVFPDGPPPTGQRYCLNSASLVFQ 138
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Match: UPI001FF4BA14 (peptide-methionine (R)-S-oxide reductase MsrB n=1 Tax=Alcanivorax sp. S6407 TaxID=2926424 RepID=UPI001FF4BA14) HSP 1 Score: 159 bits (402), Expect = 2.040e-43 Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = 1 Query: 160 VSASGHDVTRLAQPTSQLAKDRKLSIKQRYVVGGGTEPPFSGRFTNGVKYNTKRRGTFNCIVCDLPAYASSSKFKSGTGWPSFYEPIDPDHVWETTDVSHGMVRKEVKCVRCHAHQGHVFNDGPQPTGKRYCVNAASLTFKA 585
SASG+D+T L++ Q ++R ++ GTEPPF G + K G ++C +CDLP ++S SKF+SGTGWPSFY P D +H+ E D SHGMVR E++C RC H GHVF DGP PTG RYC+N+AS+ FKA
Sbjct: 5 TSASGYDLTPLSEADKQQKAANLTEEERRILLNQGTEPPFCGGLLDN-----KDSGVYHCKLCDLPLFSSDSKFESGTGWPSFYAPFDSEHIRELRDTSHGMVRVEIRCARCDGHLGHVFPDGPAPTGLRYCLNSASMVFKA 141
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Match: A0A095SP60_9GAMM (Peptide methionine sulfoxide reductase MsrB n=5 Tax=Alcanivoracaceae TaxID=224372 RepID=A0A095SP60_9GAMM) HSP 1 Score: 158 bits (400), Expect = 3.760e-43 Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 1 Query: 160 VSASGHDVTRLAQPTSQLAKDRKLSIKQRYVVGGGTEPPFSGRFTNGVKYNTKRRGTFNCIVCDLPAYASSSKFKSGTGWPSFYEPIDPDHVWETTDVSHGMVRKEVKCVRCHAHQGHVFNDGPQPTGKRYCVNAASLTFKA 585
S+SG+D+T L+ Q ++R ++ GTEPPF G + K G ++C +CDLP + S+SKF+SGTGWPSFYEP D H+ E D SHGMVR E++C RC H GHVF DGP PTG+RYC+N+AS+TFK+
Sbjct: 3 TSSSGYDLTPLSDAEKQQNAANLSEEERRILLNQGTEPPFCGGLLDN-----KEDGIYHCKLCDLPLFNSTSKFESGTGWPSFYEPFDSAHIRELRDTSHGMVRVEIRCARCDGHLGHVFPDGPPPTGQRYCLNSASMTFKS 139 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.709.1 >prot_C-linearis_contig101.709.1 ID=prot_C-linearis_contig101.709.1|Name=mRNA_C-linearis_contig101.709.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=216bp MSTNTRRHTRREPRESQRGRDRQQMATAEGRVSASGHDVTRLAQPTSQLAback to top mRNA from alignment at C-linearis_contig101:30932..33659- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.709.1 ID=mRNA_C-linearis_contig101.709.1|Name=mRNA_C-linearis_contig101.709.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2728bp|location=Sequence derived from alignment at C-linearis_contig101:30932..33659- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:30932..33659- >mRNA_C-linearis_contig101.709.1 ID=mRNA_C-linearis_contig101.709.1|Name=mRNA_C-linearis_contig101.709.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at C-linearis_contig101:30932..33659- (Chordaria linearis ClinC8C monoicous)back to top |