mRNA_C-linearis_contig101.707.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE) HSP 1 Score: 220 bits (561), Expect = 3.290e-55 Identity = 132/304 (43.42%), Postives = 172/304 (56.58%), Query Frame = 1 Query: 4366 HAFLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYAMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQPVVRFEEVVESLVAGVVRLSKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQAPTELQRPDGPVKRTGAPL--ESLDDRP------VMRRR---DENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPSPTLPA*RRKRS 5244
H +LRQLHG+ DE TP P A R R V +AM+ GNDFAKF+NVGP+ AA+LA ++ F+ VV L + ++ SKE D+P A VE +LR H MF VVW P +G LQH SGA ++EDIT TGTL S +A + G V P G EW+PPLG A + Q R + E RP R R + N +R HGFS+LP D+ W +L+EFL+VFRCLDNAG S +NK+ L Q+A DVVR+I+ CG+++ AFR P P L + K +
Sbjct: 435 HGWLRQLHGIHTPVDEGLDYTPLPEPTA-RRRLVLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAAWREVEIRLRACHTMFTQPVVWNPLSGELQHLSGAPTSEDITRHTGTLELSPLASGVARGDVCPLTGGEWDPPLGTAQAKGQAAGEDASRPKKKVTPEIASSRPPNASSRTSRARGPQETNNYRAHGFSRLPGETEDYTKWTVPKLREFLTVFRCLDNAGTSGFNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEA 737
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI) HSP 1 Score: 207 bits (526), Expect = 2.040e-54 Identity = 133/302 (44.04%), Postives = 173/302 (57.28%), Query Frame = 1 Query: 4372 FLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYAMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQP-VVRFEEVVESLVAGVVRLSKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQA--PTELQRPDGPVKRTGAPLESLD--------DRPVMRRR--------DENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPSPTL 5220
FLRQLHGLP ++P L A R R +A +AGNDFA F+N+GP+ AAK+A ++ G VV FE +V +L VV+ SKE ++P A E+KLR + MF +AVVW+P L+H S A S+ IT TGTL FSS+A I G VSPT G+ W PPL + E +R +R G+ + D+ R + D N +R+HGFS+LP + DFN W QL+EFLSVFRCLD+AG S Y K L +LA VV MIK+CG++N AFR P P L
Sbjct: 8 FLRQLHGLPRRHTPNLRASP-LTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVPFEALVGNLARIVVQDSKEEETPAALEEAEEKLRRSQNMFHNAVVWDPLKNTLRHFSCAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVWAPPLLETRIAQEFRRA---TRRAGSQMPPXXXXXXXXXXDQSTGRNKRSRKAVTHDTNNYRKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLAELAGQVVAMIKKCGLLNSNQAFRHPVPDL 305
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE) HSP 1 Score: 211 bits (537), Expect = 2.000e-52 Identity = 136/308 (44.16%), Postives = 173/308 (56.17%), Query Frame = 1 Query: 4366 HAFLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYAMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQP-VVRFEEVVESLVAGVVRLSKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQA--PTELQRPDGPVKRTGAP--------------------LESLDDRPVMRRRDENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPSPTL 5220
+AFLRQLHGLP + PL A R R +A +AGNDFA F+N+GP+ AAK+A ++ G VV FE +V +L VV+ SKE ++P A E+KLR AH MF +AVVW+P L+H SGA S+ IT TGTL FSS+A I G VSPT G+ W PPL + EL+R +R G+ + R + N H+ HGFS+LP + DFN W QL+EFLSVFRCLD+AG S Y K L +LA VV MIK+CG++N AFR P P L
Sbjct: 229 YAFLRQLHGLP-RGHTPNLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVSFEALVGNLARIVVQDSKEEETPAALEEAEEKLRRAHNMFHNAVVWDPLKNTLRHFSGAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVWAPPLLETRIAQELRRA---TRRPGSQPPXXXXXXXXXXXXXXXXXXXXNKRSRNAVTHDTNNYHK-HGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLAELAGQVVAMIKKCGLLNSNQAFRHPVPDL 531
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI) HSP 1 Score: 207 bits (528), Expect = 1.780e-51 Identity = 126/304 (41.45%), Postives = 170/304 (55.92%), Query Frame = 1 Query: 4366 HAFLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYAMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQPVVRFEEVVESLVAGVVRLSKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQAPTELQR--PDGPVKRTGAPLESLDDRP------VMRRR---DENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPSPTLPA*RRKRS 5244
H +LRQLHG+ DE TP P A R R + +A++ GNDFAKF+NVGP+ AA+LA + ++ F+ VV L + ++ S+E D+P R E +LR H MF VVW P +G LQH SGA + E+IT GT S +A + P G EW+PPLG A + Q D ++ A E+ RP R R D N +REHGFS+LP D+ +L+EFLSVFRCLDNAG S +NK+ L Q+A DVVR+I+ CG+++ AFR P P L + K +
Sbjct: 190 HGWLRQLHGIHQPVDEGLDYTPLPEPTA-RRRLLLFAIIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGYLASRLLVESREEDTPAVRREFEIRLRACHTMFTQPVVWNPLSGELQHLSGAPTREEITRHAGTSELSPLASRVARRDACPLTGREWDPPLGTAQAKGQAVGEDAGRQKKRATPETASTRPPNASSRASRSRGPQDTNNYREHGFSRLPAETEDYTKLTVPKLREFLSVFRCLDNAGTSGFNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEA 492
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI) HSP 1 Score: 175 bits (443), Expect = 2.990e-42 Identity = 118/301 (39.20%), Postives = 156/301 (51.83%), Query Frame = 1 Query: 4375 LRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYAMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQPVVRFEEVVESLVAGVVRLSKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQAPTELQRP--DGPVKRTGAPLESLDDRP------VMRRR---DENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPSPTLPA*RRKRS 5244
LRQLHG+ DE F TP P A R R + +A++ G DFAKF+NVGP+ AA+LA + + + E+ G SP R + R VVW P +G LQH SGA + E+IT TGTL S +A + G + G EW+PPLG A + Q D ++ A E+ RP R R D N +REHGFS+LP D+ W +L+EFLSVFRCLDN G S NK+ L Q+A DVVR+I+ CG+++ AFR P P L + K +
Sbjct: 166 LRQLHGIHQPVDEGFDYTPLPEPTA-RRRLLLFAIIVGKDFAKFKNVGPVTAARLAFVDTESVSGRHLCYHSMRLWETWPQGCWW------SPGRRTR----------LLRGPVVWNPLSGELQHLSGASTREEITRHTGTLELSPLASRVARGDICLLTGREWDPPLGTAQGKGQAAGADAGRQKKKATPETASSRPSNASSRASRARGPQDTNNYREHGFSRLPGETEDYTKWTVPKLREFLSVFRCLDNTGTSGLNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPFPDLSSFEEKEA 449
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Match: D7G6L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L7_ECTSI) HSP 1 Score: 168 bits (425), Expect = 5.520e-42 Identity = 120/304 (39.47%), Postives = 156/304 (51.32%), Query Frame = 1 Query: 4372 FLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYAMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQP-VVRFEEVVESLVAGVVRLSKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQA--PTELQRPDGPVKRTGAP----------LESLDDRPVMRRR--------DENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPSPTL 5220
FLRQLHGLP ++P L A R R +A +AGNDFA F+N+GP+ AAK+A ++ G VV FE +V +L VV+ SKE ++P A E+KLR +H MF +AVVW P L+H S A S+ IT TGTL FS +A I G VSPT G+ W PPL +A E +R +R G+ D+ R + D N + +HGFS+LP + DFN W QL+EFLSV VV MIK+CG++N AFR P P L
Sbjct: 8 FLRQLHGLPRRHTPNLRASP-LTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVPFEALVGNLARIVVQDSKEEETPAALEEAEEKLRRSHNMFHNAVVWGPLKNTLRHFSCAASSLAITKDTGTLEFSYVASGIASGEVSPTTGQVWAPPLLEARMAQEFRRA---TRRPGSQPPXXXXXXXXXXXXXDQSTGRNKRSRKAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSV----------------------QVVAMIKKCGLLNSNQAFRHPVPDL 285
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI) HSP 1 Score: 166 bits (421), Expect = 5.920e-39 Identity = 102/238 (42.86%), Postives = 135/238 (56.72%), Query Frame = 1 Query: 4564 ASGQPVVRFEEVVESLVAGVVRLSKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQAPTELQR--PDGPVKRTGAPLESLDDRP------VMRRR---DENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPSPTLPA*RRKRS 5244
AS QP F+ VV L + ++ S+E D+P AR E +LR H M VVW+P +G LQH SGA + E+IT TGTL S +A + G V P G EW+PPLG A + Q D ++ A E+ RP R R D N +REHGFS+LP D+ W +L+EFLSVFRCLD AG S + K+ L Q+A DVVR+I+ CG+++ AFR P P L + K +
Sbjct: 190 ASLQP---FDAVVGDLASRLLVESREEDTPAARREFEIRLRACHTMVTQPVVWDPLSGELQHLSGAPTREEITRHTGTLELSPLASRVARGDVCPLTGREWDPPLGTAQAKGQAVGEDAGRQKKRATPETASTRPPNASSRASRARGPQDTNNYREHGFSRLPGETEDYTKWTVPKLREFLSVFRCLDTAGTSGFKKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEA 424
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Match: D7G3Y3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y3_ECTSI) HSP 1 Score: 140 bits (352), Expect = 8.790e-33 Identity = 85/193 (44.04%), Postives = 103/193 (53.37%), Query Frame = 1 Query: 4699 MFRHAVVWEPDTGLLQHRSGAQSTEDITNATGTLRFSSIACDIVWGTVSPTDGEEWNPPL----------------GQAPTELQRPDGPVKRTGAPLESLDDRPVMRR---RDENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPSPTL 5220
MF +AVVW+P L+H SGA S+ ITN TGTL FSS+A I G VSPT G+ W PPL G P S R+ D N + +HGFS+LP + DFN W QL+EFLSVFRCLD+AG S Y K LV+LA +V MIK+CG++N AFR P P L
Sbjct: 1 MFHNAVVWDPLKNTLRHFSGAASSLAITNDTGTLEFSSVASGIASGEVSPTTGQVWAPPLLETRIAQEFRRATRRPGSQPPXXXXXXXXXXXXXXXXXSTSRNKRSRKAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLVELAGQIVAMIKKCGLLNSNQAFRHPVPDL 193
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI) HSP 1 Score: 138 bits (347), Expect = 5.460e-30 Identity = 108/302 (35.76%), Postives = 147/302 (48.68%), Query Frame = 1 Query: 4366 HAFLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYAMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQPVVRFEEVVESLVAGVVRLSKEGDSPEARA-AVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQAPTELQRPDGPVKRTG-------APLESLDDRP------VMRRR---DENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPSPTL 5220
H +LRQLHG+ DE TP P R R + +A++ GNDFAKF+NVGP+ AA+LA + ++ F+ VV L + ++ S+E D+P AR VE R R PD G D+ G + + + C G D P G + E G R G A LE+ RP R R D N +REHGFS+LP D+ W +L+EF+SV+RCLDNAG S +NK+ L Q+A DVVR+I+ CG+++ AFR P P L
Sbjct: 163 HGWLRQLHGIHQPVDEGLDYTPLPEPTG-RRRLLLFAVIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGDLASRLLVESREEDTPAARPRGVEPAERRTPTFVRR-----PDQG-----GNHPPYRDV----GAIP-AGVPCGP--GRCLSADRARMGPTAGYSTNE-----GAGGRRGCWQAEERATLETASTRPPNASSRASRARGPQDTNNYREHGFSRLPGETEDYTKWTVPKLREFVSVYRCLDNAGTSGFNKALLAQMAGDVVRVIRSCGVLDTNLAFRHPVPDL 441
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Match: D7G2U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U9_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 1.940e-17 Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 2 Query: 5252 PDLPPASVRVRDWEVLRDFLPEISKAVILRFLQEVNPTASLSSRVWYRGMQRVMDMGNLSRLWAVPPQHGVMWLG 5476
P+LP R+ +E + LPE+SK+VIL+F ++VNP + SRVWYRGMQ+VMDMGNL+RLW VP ++G+M+LG
Sbjct: 33 PELPGPRSRISGFEHPQQHLPEMSKSVILQFPRQVNPISGEGSRVWYRGMQKVMDMGNLNRLWRVPAKNGLMYLG 107 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.707.1 >prot_C-linearis_contig101.707.1 ID=prot_C-linearis_contig101.707.1|Name=mRNA_C-linearis_contig101.707.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=252bp MGIVKLSPKLKVLCGLQANLETDKNLELVIDGGFLLHKCASRGDAAEKLVback to top mRNA from alignment at C-linearis_contig101:14597..22757+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.707.1 ID=mRNA_C-linearis_contig101.707.1|Name=mRNA_C-linearis_contig101.707.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8161bp|location=Sequence derived from alignment at C-linearis_contig101:14597..22757+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:14597..22757+ >mRNA_C-linearis_contig101.707.1 ID=mRNA_C-linearis_contig101.707.1|Name=mRNA_C-linearis_contig101.707.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at C-linearis_contig101:14597..22757+ (Chordaria linearis ClinC8C monoicous)back to top |