Homology
BLAST of mRNA_C-linearis_contig101.706.1 vs. uniprot
Match: D8LE05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE05_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 1.350e-10 Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1 Query: 40 MEMARFTIYLTVPVIVITICSDPKNMNMLLRG 135
MEMARF +Y++VPV+VITICSDPKNMN LLRG
Sbjct: 1 MEMARFFMYVSVPVVVITICSDPKNMNTLLRG 32
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.706.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D8LE05_ECTSI | 1.350e-10 | 81.25 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Exons | 2 |
| Model size | 138 |
| Cds size | 138 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927359.3337543-CDS-C-linearis_contig101:12389..12454 | 1622927359.3337543-CDS-C-linearis_contig101:12389..12454 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 12390..12454 - |
| 1690879651.3159907-CDS-C-linearis_contig101:12389..12454 | 1690879651.3159907-CDS-C-linearis_contig101:12389..12454 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 12390..12454 - |
| 1622927359.3732834-CDS-C-linearis_contig101:13345..13418 | 1622927359.3732834-CDS-C-linearis_contig101:13345..13418 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 13346..13418 - |
| 1690879651.3246462-CDS-C-linearis_contig101:13345..13418 | 1690879651.3246462-CDS-C-linearis_contig101:13345..13418 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig101 13346..13418 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.706.1 >prot_C-linearis_contig101.706.1 ID=prot_C-linearis_contig101.706.1|Name=mRNA_C-linearis_contig101.706.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=46bp
MRWMHPNPRKRYGMEMARFTIYLTVPVIVITICSDPKNMNMLLRG* back to topmRNA from alignment at C-linearis_contig101:12390..13418- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig101.706.1 ID=mRNA_C-linearis_contig101.706.1|Name=mRNA_C-linearis_contig101.706.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1029bp|location=Sequence derived from alignment at C-linearis_contig101:12390..13418- (Chordaria linearis ClinC8C monoicous)
ATGCGGTGGATGCACCCGAATCCTCGCAAGAGGTATGGCATGGAAATGGC
CCGGTTCACGATCTACCTCACGGGTGAGTGATGCACACCGCGTGTTGTGG
TATGCGTACATACGTGCATCAGTTTTCGTGTTCAGTGCATGTCGTTCCGC
CCGCAGTCGCGTGGCCAGGATATGCACACGTGGTCGGGCTTCGGGGCCAC
GGCTGTGTGCTGTGTGCCTGCTGCAGAGGCACGTAGAGAAATACTCAGCG
CACACACATGGCAGAGTTGCGGTTTGACTTTGGCTTGCACGCACCACCGG
TGAACGAACTATGTACGTTCAACAGCAGTAGGCAGGAGCCTCAACCTCTC
TTGTTCTGCCGTGGGGCCCTGACGAGTTGCGGTGGCCGTGTGCTCCTGCT
GCATGCAGGAGCTGTTTTAGGCTATCCTTCAACCCCCCCTAGAACCCGTT
GTCTACACAAGTCGACACAAGCAGCAGTACAATAGAGCACATACACACCC
CGAAGCTGAGAGGCAAAAAAACATGAGCCCAAGCGGCCATACTGTTTTTG
TGATGTGCTCTGCCGCTCTTGCGCCGTGGGGCTGCTCCGCTGCCTGTGCG
CGTGTGTATTTCTTTCTGGCTGGAGTATTGGTGTCCTCAGGTAATCCGAC
GCGCAGAAAAAGTCGCACTTTCGTCTTTGCCGACCCCTATTTGCTTGGCG
TCGGCGGAGATAGTGACTCGCTTCGCTCGTAGCAACTGAGATTTTTCATG
CCGTGAACGAAAACCAATACCAGACGCTGATTTACGACCACAAAGCACAT
TTGACTCGACGTATAGCCTCGTGGGCTCTCGATTGGGCTTGTGGTACAAT
ACATTACCACCTCCGCGCGCCAGCGTCCCTCTAATCCCCCAAACGAAATT
TCCCTCCTCCCCTTGTTCGCGACGATGTCGGCGCTTTTTGTGTCCCATCC
TGCTTCTCTTGCAGTGCCTGTGATTGTGATCACGATTTGCAGCGATCCGA
AGAACATGAATATGTTGCTACGAGGGTGA back to topCoding sequence (CDS) from alignment at C-linearis_contig101:12390..13418- >mRNA_C-linearis_contig101.706.1 ID=mRNA_C-linearis_contig101.706.1|Name=mRNA_C-linearis_contig101.706.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at C-linearis_contig101:12390..13418- (Chordaria linearis ClinC8C monoicous)
ATGCGGTGGATGCACCCGAATCCTCGCAAGAGGTATGGCATGGAAATGGC
CCGGTTCACGATCTACCTCACGGATGCGGTGGATGCACCCGAATCCTCGC
AAGAGGTATGGCATGGAAATGGCCCGGTTCACGATCTACCTCACGGTGCC
TGTGATTGTGATCACGATTTGCAGCGATCCGAAGAACATGAATATGTTGC
TACGAGGGTGATGCCTGTGATTGTGATCACGATTTGCAGCGATCCGAAGA
ACATGAATATGTTGCTACGAGGGTGA back to top
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