mRNA_C-linearis_contig100.697.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig100.697.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE) HSP 1 Score: 402 bits (1033), Expect = 3.560e-127 Identity = 216/264 (81.82%), Postives = 236/264 (89.39%), Query Frame = 3 Query: 1275 SLPASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRSAATGDTASALLSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTVAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHVKYEKGGNKMFQCKASNGSPCSDGSSRKNTCRCVHSAIVAVYIYDRYKPGVAGQELELERDGEMDGMEFGPEG 2063
S SVV+RSRLAQNRQESTDVYEFPT TTSS TAATTAASPTPPS PGTT+SVCTSN QNRVAVIKAG RF+CSR +CRR+E L SAATGDTASAL S CAHAEVV EA++TS MPKADAL S G SAL KVPAGTFN TVA+MRARADQAAKEG+PLLVR GNTKYFAVRDGQKFNRTVIGEWGHVKY++ G+K+FQCKAS+GSPCSDG+SRK+T RC+H+AIVAVYIYDRYK GVAG+ELELERDG+MDGMEFGPEG
Sbjct: 246 SKAVSVVDRSRLAQNRQESTDVYEFPT-TTSSPTAATTAASPTPPSGPGTTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSAGDFESALDKVPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASDGSPCSDGASRKSTGRCIHAAIVAVYIYDRYKSGVAGEELELERDGDMDGMEFGPEG 508
BLAST of mRNA_C-linearis_contig100.697.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE) HSP 1 Score: 395 bits (1014), Expect = 8.930e-126 Identity = 213/258 (82.56%), Postives = 231/258 (89.53%), Query Frame = 3 Query: 1275 SLPASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRSAATGDTASALLSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTVAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHVKYEKGGNKMFQCKASNGSPCSDGSSRKNTCRCVHSAIVAVYIYDRYKPGVAGQELELERDGEMDGM 2045
S SVV+RSRLAQNRQESTDVYEFPT TTSS TAATTAASPTPPS PGTT+SVCTSNSQNRVAVIKAGDRF+CSR +CRR+E L SAATGDTASAL S CAHAEVV EA+RTS MPKADAL S G SAL KVPAGTFNP TVA+MRARADQAAKEG+PLLVR GNTKYFAVRDGQKFNRTVIGEWGHVKY++ G+K+FQCKASNGSPCSD SSRK+T RCVH+AIVAVYIYDRYK GVAG+ELELERDG+M+ +
Sbjct: 330 SKTVSVVDRSRLAQNRQESTDVYEFPT-TTSSPTAATTAASPTPPSGPGTTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASNGSPCSDSSSRKSTGRCVHAAIVAVYIYDRYKSGVAGEELELERDGDMESL 586
BLAST of mRNA_C-linearis_contig100.697.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE) HSP 1 Score: 252 bits (643), Expect = 2.520e-75 Identity = 126/148 (85.14%), Postives = 136/148 (91.89%), Query Frame = 3 Query: 1620 MPKADALFSGGGVTSALAKVPAGTFNPPTVAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHVKYEKGGNKMFQCKASNGSPCSDGSSRKNTCRCVHSAIVAVYIYDRYKPGVAGQELELERDGEMDGMEFGPEG 2063
MPKADAL S G SAL KVPAGTFNP TVA+MRARADQAAKEG+PLLVR GNTKYFAVRDGQKFNRTVIGEWGHVKY++ G+K+FQCKASNGSPCSD SSRK+T RCVH+AIVAVYIYDRYK GVAG+ELELERDG+MDGMEFGPEG
Sbjct: 3 MPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASNGSPCSDSSSRKSTGRCVHAAIVAVYIYDRYKSGVAGEELELERDGDMDGMEFGPEG 150
BLAST of mRNA_C-linearis_contig100.697.1 vs. uniprot
Match: A0A6H5KAW8_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE) HSP 1 Score: 201 bits (510), Expect = 2.650e-52 Identity = 147/377 (38.99%), Postives = 182/377 (48.28%), Query Frame = 3 Query: 1281 PASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRSAATGDTASALLSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTVAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIG------------------------------------------------------------------------------------------------------------------EWGHVKYE-KGGNKMFQCKASNGSPCSDGSSRKNTCRCVHSAIVAVYIYDRYKPGVAGQELELERDGEMDGMEFGPEG 2063
P +V++RS A+ R T V+EFP P+ +TAATT S TP S GTT+SVCTS S NRVAVIKAG+++MCSRN+C +ATG T L + C HAEVV EA+ +S MPKAD +FS AL VP GTFN T AM RADQAA+EGVP+LV G+T+YF ++DG + +RTVIG EW HVKY+ KGG+KMFQCK + G SR+ T RC H+AIVA+YIY R K G+ G ++LE DG+MDGMEFGPEG
Sbjct: 87 PVAVLDRSTQAKTRHVRTSVFEFPAPSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC--------SATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIGGLYTIKAPGLSEPSLPRLSTKPVTSLHTPNTFTLFRKKRKIIDNARNVCRCATVRCRPHAPVSLLRCRCSGAAVAGPSTTKLDPLRFVHALVAVLPSRFLAFSLVALRRGEEGVEWAHVKYDDKGGSKMFQCKG-----WAKGKSRRKTGRCFHAAIVAIYIYHRDKIGLGGG-VDLELDGDMDGMEFGPEG 449
BLAST of mRNA_C-linearis_contig100.697.1 vs. uniprot
Match: A0A6H5JH13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE) HSP 1 Score: 198 bits (504), Expect = 1.710e-50 Identity = 118/206 (57.28%), Postives = 144/206 (69.90%), Query Frame = 3 Query: 1281 PASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRS--AATGDTASALLSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTVAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHVKYE-KGGNKMFQCK 1886
P V++RS A+ R V+EFP + +TAATT S TP S G T SVCTS S NRVAVIKAG+++MCSR+ECRRV ++++ AA G T S L + C HAEVV EA+R+S MPKAD LFS G AL VP GTFN T AM RADQAA+ GVP+LV G+T+ F ++DG + NRTVIGEW HVKY+ KGG+KMFQCK
Sbjct: 576 PVPVLDRSTQAKTRHVRASVFEFPARSPPVVTAATTTLSATPTSGTGATHSVCTSVSLNRVAVIKAGNKYMCSRDECRRVGNVQTSAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTTVPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCK 781
BLAST of mRNA_C-linearis_contig100.697.1 vs. uniprot
Match: D7FN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI) HSP 1 Score: 179 bits (455), Expect = 2.270e-45 Identity = 110/207 (53.14%), Postives = 139/207 (67.15%), Query Frame = 3 Query: 1281 PASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRS--AATGDTASALLSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAK-VPAGTFNPPTVAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHVKYE-KGGNKMFQCK 1886
P + RS LA++R ST ++EFP T +LT A T S TP G T+SVCTS RVAVIK GD F+CSR +CRRV++ ++ AATG T SAL + C HAEVV +A+R+S MP AD LFS AL VPAG F+ T AM ARADQAA++GVP+LV G+TKYF + DG + NR V+G W HVKY+ + G+K+FQCK
Sbjct: 300 PVPALERSALAKSRIGSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKDCRRVKNPQTSAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCK 506
BLAST of mRNA_C-linearis_contig100.697.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE) HSP 1 Score: 160 bits (404), Expect = 6.180e-41 Identity = 100/210 (47.62%), Postives = 136/210 (64.76%), Query Frame = 3 Query: 1281 PASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTP--GTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESL--RSAATGDTASALLSHCAHAEVVTEADRTSQMPKADA---LFSGGGVTSALAKVPAGTFNPPTVAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHVKYEKGGNKM-FQCK 1886
P S+++RS A+ R T V+E P+ T+ TA +T PTP TP GTT+S CTS QNRV+V+++ R+MCSR EC+ +E+L ++AA GDT L HCAHA+VV +A + S +P A A L S AL VP GTFN T+ A+RAR +A + G+P+LV+ G+TK+FAVRDG FNR ++G W HVK E+ G K +CK
Sbjct: 38 PTSLLDRSTQARTRNVGTSVFELPSTQTTPTTADST---PTPAPTPREGTTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQA-KASSVPMAGATALLPSAEEFLRALDAVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCK 243
BLAST of mRNA_C-linearis_contig100.697.1 vs. uniprot
Match: A0A6H5KLI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.700e-31 Identity = 73/119 (61.34%), Postives = 84/119 (70.59%), Query Frame = 3 Query: 1536 AATGDTASALLSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTVAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHVKYE-KGGNKMFQCK 1886
AATG T S L + C EVV E +R+S MPKAD LFS G AL VP GTFN T AM RADQAAKEGVP+LV G+T+ F ++DG + NRTVIGEW HVKY+ KGG+KMFQCK
Sbjct: 10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTTVPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCK 128
BLAST of mRNA_C-linearis_contig100.697.1 vs. uniprot
Match: A0A6H5L2J5_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J5_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 5.240e-13 Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 3 Query: 1872 MFQCKASNGSPCSDGSSRKNTCRCVHSAIVAVYIYDRYKPGVAGQELELERDGEMDGMEFGPE 2060
M K +NG+PCSD +SRK+T RCVH+ IVAVYIYDR + +G+ ELERDGEMDGMEFG E
Sbjct: 16 MALVKGNNGNPCSDSTSRKHTGRCVHAGIVAVYIYDR-QVSSSGEGPELERDGEMDGMEFGSE 77 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.697.1 >prot_C-linearis_contig100.697.1 ID=prot_C-linearis_contig100.697.1|Name=mRNA_C-linearis_contig100.697.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=355bp MFSDCTLVRGGSPLPAGFRGSRTCTAHTHDTLLDTLALRTAAPPDLGGDFback to top mRNA from alignment at C-linearis_contig100:345055..349314- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig100.697.1 ID=mRNA_C-linearis_contig100.697.1|Name=mRNA_C-linearis_contig100.697.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4260bp|location=Sequence derived from alignment at C-linearis_contig100:345055..349314- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig100:345055..349314- >mRNA_C-linearis_contig100.697.1 ID=mRNA_C-linearis_contig100.697.1|Name=mRNA_C-linearis_contig100.697.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2130bp|location=Sequence derived from alignment at C-linearis_contig100:345055..349314- (Chordaria linearis ClinC8C monoicous)back to top |