mRNA_C-linearis_contig10.672.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.672.1
Unique NamemRNA_C-linearis_contig10.672.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.672.1 vs. uniprot
Match: A0A6H5KLU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 7.470e-13
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:  239 QEIQWPDAVERAAHADFLQKYGHKNYPRVAYIADGTMVGMR 361
            +EIQWPDA ERAAH  FLQ +GH ++PRVAYIADGTMV MR
Sbjct:  105 EEIQWPDAAERAAHCTFLQTWGHPDFPRVAYIADGTMVNMR 145
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BLAST of mRNA_C-linearis_contig10.672.1 vs. uniprot
Match: A0A6H5KWG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.970e-12
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:  239 QEIQWPDAVERAAHADFLQKYGHKNYPRVAYIADGTMVGMR 361
            +EIQWPDA ERAAH  FLQ +GH ++PRVAYIADGTMV MR
Sbjct:  213 EEIQWPDAAERAAHCTFLQTWGHPDFPRVAYIADGTMVNMR 253
[Close]
BLAST of mRNA_C-linearis_contig10.672.1 vs. uniprot
Match: A0A6H5KIX2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.930e-12
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:  239 QEIQWPDAVERAAHADFLQKYGHKNYPRVAYIADGTMVGMR 361
            +EIQWPDA ERAAH  FLQ +GH ++PRVAYIADGTMV MR
Sbjct:   53 EEIQWPDAAERAAHCTFLQTWGHPDFPRVAYIADGTMVNMR 93
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KLU9_9PHAE7.470e-1375.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWG0_9PHAE2.970e-1275.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIX2_9PHAE3.930e-1275.61DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3583497..3584331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size361
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.672.1prot_C-linearis_contig10.672.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3583606..3584331 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.310728-UTR-C-linearis_contig10:3583496..35836051622927325.310728-UTR-C-linearis_contig10:3583496..3583605Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3583497..3583605 +
1690879627.4583635-UTR-C-linearis_contig10:3583496..35836051690879627.4583635-UTR-C-linearis_contig10:3583496..3583605Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3583497..3583605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.3270152-CDS-C-linearis_contig10:3583605..35837371622927325.3270152-CDS-C-linearis_contig10:3583605..3583737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3583606..3583737 +
1690879627.4718163-CDS-C-linearis_contig10:3583605..35837371690879627.4718163-CDS-C-linearis_contig10:3583605..3583737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3583606..3583737 +
1622927325.3363903-CDS-C-linearis_contig10:3584211..35843311622927325.3363903-CDS-C-linearis_contig10:3584211..3584331Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3584212..3584331 +
1690879627.481942-CDS-C-linearis_contig10:3584211..35843311690879627.481942-CDS-C-linearis_contig10:3584211..3584331Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3584212..3584331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.672.1

>prot_C-linearis_contig10.672.1 ID=prot_C-linearis_contig10.672.1|Name=mRNA_C-linearis_contig10.672.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=84bp
MRILPKKRDKKTDKHREEQTKLAEKRWVEQTRMVEVRQKKADIQEIQWPD
AVERAAHADFLQKYGHKNYPRVAYIADGTMVGMR
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mRNA from alignment at C-linearis_contig10:3583497..3584331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.672.1 ID=mRNA_C-linearis_contig10.672.1|Name=mRNA_C-linearis_contig10.672.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=835bp|location=Sequence derived from alignment at C-linearis_contig10:3583497..3584331+ (Chordaria linearis ClinC8C monoicous)
TTCTCTTTCGGACCAGGCGTCGACCATTGGGTCCAGCAATCACGCGGAGT
GGAAATAGCAGAGGAGCAAGTGTCTCTCGCAAAAAAGAGCTTGCAAGTGA
TGACGGACAATGCGGATTTTACCAAAAAAACGAGACAAAAAGACGGACAA
GCACCGGGAGGAGCAAACGAAGCTAGCTGAGAAACGTTGGGTGGAGCAAA
CGAGGATGGTTGAAGTACGCCAGAAAAAAGCAGACATTCAGGTGAAGCTT
GCCCGGGTAGGGGACTGAGTCTCAACTACGGTGGTATTAAATTATAAACA
TGCGCCTGTTTTCGCCGCGTCGCATGAGGTCGGGATTGCACTCTGTCGTT
GCTTTGGAGCCATGCCGGAGCTTACGGAGGTTGTTGGGTGGCGTAGAGTT
CGAAATATGGATCTTCGGCTCTCGTTGGCGAAAGCCATGCAGCGCCTACA
CGGACTTGGCTGCGAAAACTTGCTTAGATCCTTTTAGTGTGGAGTATGTG
TGTGTGGAGTATTCGTCTTCGCTTGTGTATTTTTGTATTCGAAAAAAGGT
GTTGTGTCAACGTGTGTAGCAAGCGCGATGTCGCCCGTACGTGCGCATGT
GTACTGCTAGAGCTGTGAGTTGCCAATGTTTCACCGATGTATTGTGCTAA
GGCGTGGTTGTTAACAAGGGTTAGAGTATCAATTATCGCTTAGACTTTCC
ATCGCTTTTTTCCAGGAAATTCAATGGCCGGACGCAGTGGAGCGGGCGGC
TCATGCTGATTTCCTTCAGAAGTACGGCCACAAAAATTACCCTCGTGTGG
CCTACATTGCGGACGGGACCATGGTGGGCATGCGC
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Coding sequence (CDS) from alignment at C-linearis_contig10:3583497..3584331+

>mRNA_C-linearis_contig10.672.1 ID=mRNA_C-linearis_contig10.672.1|Name=mRNA_C-linearis_contig10.672.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at C-linearis_contig10:3583497..3584331+ (Chordaria linearis ClinC8C monoicous)
ATGCGGATTTTACCAAAAAAACGAGACAAAAAGACGGACAAGCACCGGGA
GGAGCAAACGAAGCTAGCTGAGAAACGTTGGGTGGAGCAAACGAGGATGG
TTGAAGTACGCCAGAAAAAAGCAGACATTCAGATGCGGATTTTACCAAAA
AAACGAGACAAAAAGACGGACAAGCACCGGGAGGAGCAAACGAAGCTAGC
TGAGAAACGTTGGGTGGAGCAAACGAGGATGGTTGAAGTACGCCAGAAAA
AAGCAGACATTCAGGAAATTCAATGGCCGGACGCAGTGGAGCGGGCGGCT
CATGCTGATTTCCTTCAGAAGTACGGCCACAAAAATTACCCTCGTGTGGC
CTACATTGCGGACGGGACCATGGTGGGCATGCGCGAAATTCAATGGCCGG
ACGCAGTGGAGCGGGCGGCTCATGCTGATTTCCTTCAGAAGTACGGCCAC
AAAAATTACCCTCGTGTGGCCTACATTGCGGACGGGACCATGGTGGGCAT
GCGC
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