mRNA_C-linearis_contig10.667.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.667.1
Unique NamemRNA_C-linearis_contig10.667.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.667.1 vs. uniprot
Match: A0A6H5KLU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU9_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.800e-42
Identity = 64/83 (77.11%), Postives = 70/83 (84.34%), Query Frame = 2 
Query:    2 DRVIGWLEMFRRDTMFEDMALKYGRCKGTWSNDFHDMTMAAQNMPCLQEEIQWPDAVERARHADFLETYGHPDLPRVAYIADG 250
            DRV+ WLEM RRDT+FEDMAL YGRC GT+ N+F D T AAQNMPCLQEEIQWPDA ERA H  FL+T+GHPD PRVAYIADG
Sbjct:   57 DRVLCWLEMLRRDTLFEDMALAYGRCAGTYHNEFKDTTAAAQNMPCLQEEIQWPDAAERAAHCTFLQTWGHPDFPRVAYIADG 139
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BLAST of mRNA_C-linearis_contig10.667.1 vs. uniprot
Match: A0A6H5KWG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG0_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 9.150e-41
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 2 
Query:    2 DRVIGWLEMFRRDTMFEDMALKYGRCKGTWSNDFHDMTMAAQNMPCLQEEIQWPDAVERARHADFLETYGHPDLPRVAYIADG 250
            DRV+ WLEM RRDT FEDMAL YGRC GT+ N+F D T AAQNMPCLQEEIQWPDA ERA H  FL+T+GHPD PRVAYIADG
Sbjct:  165 DRVLCWLEMLRRDTCFEDMALAYGRCAGTYHNEFKDTTAAAQNMPCLQEEIQWPDAAERAAHCTFLQTWGHPDFPRVAYIADG 247
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BLAST of mRNA_C-linearis_contig10.667.1 vs. uniprot
Match: A0A6H5KIX2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.110e-38
Identity = 63/83 (75.90%), Postives = 69/83 (83.13%), Query Frame = 2 
Query:    2 DRVIGWLEMFRRDTMFEDMALKYGRCKGTWSNDFHDMTMAAQNMPCLQEEIQWPDAVERARHADFLETYGHPDLPRVAYIADG 250
            DRV+ WLEM RRDT+FEDMAL  GRC GT+ N+F DMT AAQNMP LQEEIQWPDA ERA H  FL+T+GHPD PRVAYIADG
Sbjct:    5 DRVLCWLEMLRRDTLFEDMALACGRCAGTFHNEFKDMTAAAQNMPSLQEEIQWPDAAERAAHCTFLQTWGHPDFPRVAYIADG 87
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BLAST of mRNA_C-linearis_contig10.667.1 vs. uniprot
Match: A0A6H5JZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF6_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.170e-26
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 2 
Query:    2 DRVIGWLEMFRRDTMFEDMALKYGRCKGTWSNDFHDMTMAAQNMPCLQEEIQWPDAVERARHADFLETYGHPDLPRVAYI 241
            DRV+ WLE+ RRDT+FED+AL YGRC GT+ N+F DMT AAQNMPCLQ EIQWP+  E+A H  FL+    P + R++ +
Sbjct:  161 DRVLCWLEILRRDTLFEDVALAYGRCAGTYHNEFKDMTAAAQNMPCLQVEIQWPEPAEQAAHCTFLQ----PGVTRISLV 236
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BLAST of mRNA_C-linearis_contig10.667.1 vs. uniprot
Match: A0A6H5JMX0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.190e-19
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:    2 DRVIGWLEMFRRDTMFEDMALKYGRCKGTWSNDFHDMTMAAQNMPCLQEEIQWPDAVERARHADFLETYGHPD 220
            DRV+ ++EM RRDT FEDM+LKYGR KGTWSN+FHDMTMAAQ+MPCLQ+      ++         + + HPD
Sbjct:  189 DRVLCYVEMLRRDTSFEDMSLKYGRSKGTWSNEFHDMTMAAQDMPCLQQVETVRGSLSDRGALLSSDVFQHPD 261
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BLAST of mRNA_C-linearis_contig10.667.1 vs. uniprot
Match: A0A6H5KI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI20_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.570e-18
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:    2 DRVIGWLEMFRRDTMFEDMALKYGRCKGTWSNDFHDMTMAAQNMPCLQEEIQWPDAVERAR 184
            DRV+ WLEM RRDT+FEDMAL YGRC GT+ N+F D T AAQNMPCLQEE    D     R
Sbjct:  169 DRVLCWLEMLRRDTLFEDMALAYGRCAGTYHNEFKDTTAAAQNMPCLQEEAAAGDLSNEER 229
[Close]
BLAST of mRNA_C-linearis_contig10.667.1 vs. uniprot
Match: A0A6H5JTY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTY5_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.600e-6
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 2 
Query:    2 DRVIGWLEMFRRDTMFEDMALKYGRCKGTWSNDFHD 109
            DRV+ WLEM RRDT+FEDMAL Y RC GT  N  HD
Sbjct:  123 DRVLCWLEMLRRDTLFEDMALAYRRCAGTNHNG-HD 157
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KLU9_9PHAE1.800e-4277.11Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWG0_9PHAE9.150e-4177.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIX2_9PHAE1.110e-3875.90DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JZF6_9PHAE1.170e-2658.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMX0_9PHAE8.190e-1956.16DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KI20_9PHAE3.570e-1865.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTY5_9PHAE4.600e-669.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3543959..3544756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.667.1prot_C-linearis_contig10.667.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3543959..3544731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.0230896-CDS-C-linearis_contig10:3543958..35440601622927352.0230896-CDS-C-linearis_contig10:3543958..3544060Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3543959..3544060 -
1690879646.283738-CDS-C-linearis_contig10:3543958..35440601690879646.283738-CDS-C-linearis_contig10:3543958..3544060Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3543959..3544060 -
1622927352.0360286-CDS-C-linearis_contig10:3544608..35447311622927352.0360286-CDS-C-linearis_contig10:3544608..3544731Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3544609..3544731 -
1690879646.2924016-CDS-C-linearis_contig10:3544608..35447311690879646.2924016-CDS-C-linearis_contig10:3544608..3544731Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3544609..3544731 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.047011-UTR-C-linearis_contig10:3544731..35447561622927352.047011-UTR-C-linearis_contig10:3544731..3544756Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3544732..3544756 -
1690879646.3007867-UTR-C-linearis_contig10:3544731..35447561690879646.3007867-UTR-C-linearis_contig10:3544731..3544756Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3544732..3544756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.667.1

>prot_C-linearis_contig10.667.1 ID=prot_C-linearis_contig10.667.1|Name=mRNA_C-linearis_contig10.667.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=75bp
MFRRDTMFEDMALKYGRCKGTWSNDFHDMTMAAQNMPCLQEEIQWPDAVE
RARHADFLETYGHPDLPRVAYIADG
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mRNA from alignment at C-linearis_contig10:3543959..3544756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.667.1 ID=mRNA_C-linearis_contig10.667.1|Name=mRNA_C-linearis_contig10.667.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=798bp|location=Sequence derived from alignment at C-linearis_contig10:3543959..3544756- (Chordaria linearis ClinC8C monoicous)
GGACAGAGTCATTGGTTGGCTGGAGATGTTCAGGAGGGACACAATGTTTG
AGGATATGGCGCTGAAGTACGGACGCTGCAAGGGTACATGGTCCAACGAC
TTCCACGACATGACCATGGCCGCACAGAACATGCCGTGTTTGCAAGAGGT
GAGATGGAAATACCAATAGAACGCACTTGTTCGCTGGAAGGAGTAAGTCG
TCCGAACACAGCAACACCTGTTTTCTCGGAAAGGGTTAGACTAAAGGGAC
ATAGGTTGTATCAAGGTGTGTGACAAGTTGTTTTGTCTTCACATAAAATA
CCATATCTATGAGGGGAAGTTCCTTCTGTGGTTGGTGCTGTTTTGATTTT
TTTAAACCATCCCGGTCTCCACCCAGTACCTCCTTCTGTCCCAAACTCTC
CGTACGATGTAGTCCAGAGCACTTGACGAAGCAAATTTCCGTGGTCACAG
ACTAACTAACCTAGTTTAGTTGAAAACACAAGAAAACAAAATCATAAACA
ATAGTCTGGAGCCCTCCGCTCCCCTTCTGCACGCTACAAGTATGCGAGGT
GAAACTAAAACTAGGCATGCATGTGCATCAACACGCTTTTGGTATCGGAT
ACAAGGAAGGGCGTCCGGCGAATACGTGGTCGTTAAAAACATTTTACGAG
TACAAACGGTATCAACACCGCTGAGACTTGCCGTCGCCTTTTCCAGGAAA
TTCAATGGCCGGACGCGGTGGAGCGGGCGCGTCATGCTGATTTCCTTGAG
ACGTACGGCCATCCCGATCTCCCTCGTGTGGCCTACATTGCGGACGGG
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Coding sequence (CDS) from alignment at C-linearis_contig10:3543959..3544756-

>mRNA_C-linearis_contig10.667.1 ID=mRNA_C-linearis_contig10.667.1|Name=mRNA_C-linearis_contig10.667.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at C-linearis_contig10:3543959..3544756- (Chordaria linearis ClinC8C monoicous)
ATGTTCAGGAGGGACACAATGTTTGAGGATATGGCGCTGAAGTACGGACG
CTGCAAGGGTACATGGTCCAACGACTTCCACGACATGACCATGGCCGCAC
AGAACATGCCGTGTTTGCAAGAGATGTTCAGGAGGGACACAATGTTTGAG
GATATGGCGCTGAAGTACGGACGCTGCAAGGGTACATGGTCCAACGACTT
CCACGACATGACCATGGCCGCACAGAACATGCCGTGTTTGCAAGAGGAAA
TTCAATGGCCGGACGCGGTGGAGCGGGCGCGTCATGCTGATTTCCTTGAG
ACGTACGGCCATCCCGATCTCCCTCGTGTGGCCTACATTGCGGACGGGGA
AATTCAATGGCCGGACGCGGTGGAGCGGGCGCGTCATGCTGATTTCCTTG
AGACGTACGGCCATCCCGATCTCCCTCGTGTGGCCTACATTGCGGACGGG
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