mRNA_C-linearis_contig10.624.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.624.1
Unique NamemRNA_C-linearis_contig10.624.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.624.1 vs. uniprot
Match: D7G8S7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S7_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 8.960e-81
Identity = 145/252 (57.54%), Postives = 178/252 (70.63%), Query Frame = 2 
Query:  488 SAAASTPSSDDYSLGSWDETEDDXXXXXXXXXXGRLGAAATTLSRLSREESLPHHEEEEVTYGADIRRQFFDERNDSTALDEFDHPALAGAAAALHRYVISEGDVAFLEKAYEIARGVAGSKHSLTVAFDACRMALAVGYVHTLTKGAPDMANTFAREHSLCKLAQSLKPYWSRSPPSTPEAEVEWEECMSSLLEVASSVALMTGERDVLSVLDIEAYSGVTEATGAYLVRRPGVLQQYQDVGGTCLRQHLL 1243
            S  AS  SSD+ S+ SW+E +D            RLGA A T++ +  +++L    E+  +     ++QF +ER+D+  L+EFDHPAL GA AALH Y  S+GD +FLEKAYE+AR VAGSKH+L V+FDACR+ LAVGYVH L KGAPDMAN FA +HSL KLAQSLKPYWSRSP  TP+ E EWEEC+SSLLEV SS+ALMT E D+ +VLD + +  V EA G YL RRP VLQ YQDVG  CLR + L
Sbjct:    5 SRPASFGSSDESSVASWEEGDDGLVFEDRH----RLGAGARTVNSI--DDTLLLQLEQRSSSIRQQQQQFCNERSDTNPLEEFDHPALQGAVAALHGYAASDGDTSFLEKAYELARTVAGSKHTLGVSFDACRVVLAVGYVHILIKGAPDMANNFAHQHSLPKLAQSLKPYWSRSPSPTPDEEAEWEECVSSLLEVTSSIALMTDEGDIWTVLDRDPFGEVAEAMGLYLARRPNVLQHYQDVGSACLRNNFL 250
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BLAST of mRNA_C-linearis_contig10.624.1 vs. uniprot
Match: A0A6H5KDE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE7_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 2.970e-76
Identity = 177/367 (48.23%), Postives = 216/367 (58.86%), Query Frame = 2 
Query:  194 RPRRPMVTASLALQLLESAAQGMRSTECSSPTTAFNSRSSXXXXXXXXXLSTSTAVTQRKIESLQRALRE-------TTAAAASPP-THDPSYATKASLVSPTKNVSAA-------ASTPSSDDYSLGSWDETEDDXXXXXXXXXXGRLGAAATTLSRLSREESLPHHEEEEVTYGADIRRQ--FFDERNDSTALDEFDHPALAGAAAALHRYVISEGDVAFLEKAYEIARGVAGSKHSLTVAFDACRMALAVGYVHTLTKGAPDMANTFAREHSLCKLAQSLKPYWSRSPPSTPEAEVEWEECMSSLLEVASSVALMTGERDVLSVLDIEAYSGVTEATGAYLVRRPGVLQQYQDVGGTCLRQHLL 1243
            R  R  +TA LAL+LLE   + + S    SP +  +                      RK  SLQRALR        TTA       T D S+ T +       N + A       AS  SSD+ S+ SW E EDD           R GA A+T+  +  +++L    E+  +    IRRQ    +E +D+  L+EFDHPAL GA AALH Y  S+GD  FLEKAYE+AR VAGSKH+L V+FDACR+ LAVGYVH L KGAPD+A+ FA +HSL KLAQSLKPYWSRSP  TP+ E EWEEC+SSLLEV SS+ALMT ERD+ +VLD + +  V EA G YLVRRP  LQQYQDVG  CLR + L
Sbjct:    8 RQPRKHLTARLALKLLEDTPENLHSNTGGSPVSPVH----------------------RKTVSLQRALRNSGDIIAPTTAKGKGASFTLDLSHTTASXXXXXXXNSTLATIVDSRPASFGSSDESSVASW-EGEDDGFVFEDRH---RSGAGASTVDFI--DDTLLLQLEQRSSA---IRRQQQSCNEGSDTNPLEEFDHPALQGAIAALHGYAASDGDTVFLEKAYELARAVAGSKHTLGVSFDACRVVLAVGYVHILIKGAPDLADKFAHQHSLPKLAQSLKPYWSRSPSPTPDEEAEWEECVSSLLEVTSSIALMTDERDIWTVLDRDPFGEVAEAMGLYLVRRPNALQQYQDVGSACLRHNFL 343
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8S7_ECTSI8.960e-8157.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDE7_9PHAE2.970e-7648.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2958946..2961985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002840.1
Exons5
Model size2000
Cds size1101
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927347.6979945-UTR-C-linearis_contig10:2958945..29596661622927347.6979945-UTR-C-linearis_contig10:2958945..2959666Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2958946..2959666 -
1690879642.9681575-UTR-C-linearis_contig10:2958945..29596661690879642.9681575-UTR-C-linearis_contig10:2958945..2959666Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2958946..2959666 -
1622927347.7721074-UTR-C-linearis_contig10:2961807..29619851622927347.7721074-UTR-C-linearis_contig10:2961807..2961985Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2961808..2961985 -
1690879643.0223963-UTR-C-linearis_contig10:2961807..29619851690879643.0223963-UTR-C-linearis_contig10:2961807..2961985Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2961808..2961985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927347.7137237-CDS-C-linearis_contig10:2959666..29596961622927347.7137237-CDS-C-linearis_contig10:2959666..2959696Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2959667..2959696 -
1690879642.977525-CDS-C-linearis_contig10:2959666..29596961690879642.977525-CDS-C-linearis_contig10:2959666..2959696Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2959667..2959696 -
1622927347.723595-CDS-C-linearis_contig10:2959995..29600881622927347.723595-CDS-C-linearis_contig10:2959995..2960088Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2959996..2960088 -
1690879642.9855835-CDS-C-linearis_contig10:2959995..29600881690879642.9855835-CDS-C-linearis_contig10:2959995..2960088Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2959996..2960088 -
1622927347.733505-CDS-C-linearis_contig10:2960237..29604901622927347.733505-CDS-C-linearis_contig10:2960237..2960490Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2960238..2960490 -
1690879642.993656-CDS-C-linearis_contig10:2960237..29604901690879642.993656-CDS-C-linearis_contig10:2960237..2960490Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2960238..2960490 -
1622927347.7461793-CDS-C-linearis_contig10:2960678..29608731622927347.7461793-CDS-C-linearis_contig10:2960678..2960873Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2960679..2960873 -
1690879643.0016682-CDS-C-linearis_contig10:2960678..29608731690879643.0016682-CDS-C-linearis_contig10:2960678..2960873Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2960679..2960873 -
1622927347.7596774-CDS-C-linearis_contig10:2961277..29618071622927347.7596774-CDS-C-linearis_contig10:2961277..2961807Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2961278..2961807 -
1690879643.009628-CDS-C-linearis_contig10:2961277..29618071690879643.009628-CDS-C-linearis_contig10:2961277..2961807Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2961278..2961807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.624.1prot_C-linearis_contig10.624.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2959667..2961807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.624.1

>prot_C-linearis_contig10.624.1 ID=prot_C-linearis_contig10.624.1|Name=mRNA_C-linearis_contig10.624.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=367bp
MTTTSRPRRPMVTASLALQLLESAAQGMRSTECSSPTTAFNSRSSSSSSS
SSSDLSTSTAVTQRKIESLQRALRETTAAAASPPTHDPSYATKASLVSPT
KNVSAAASTPSSDDYSLGSWDETEDDDEDDEDDQDRGRLGAAATTLSRLS
REESLPHHEEEEVTYGADIRRQFFDERNDSTALDEFDHPALAGAAAALHR
YVISEGDVAFLEKAYEIARGVAGSKHSLTVAFDACRMALAVGYVHTLTKG
APDMANTFAREHSLCKLAQSLKPYWSRSPPSTPEAEVEWEECMSSLLEVA
SSVALMTGERDVLSVLDIEAYSGVTEATGAYLVRRPGVLQQYQDVGGTCL
RQHLLGPVTREYPGSE*
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mRNA from alignment at C-linearis_contig10:2958946..2961985-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.624.1 ID=mRNA_C-linearis_contig10.624.1|Name=mRNA_C-linearis_contig10.624.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3040bp|location=Sequence derived from alignment at C-linearis_contig10:2958946..2961985- (Chordaria linearis ClinC8C monoicous)
AGCTGATGACACGACGGGGCCGGGGAGGGTGTGACGTGGGTTTCTGGATT
GGAGCCAAAAATCAAATTTCAAACCGTCCCCTCTACACACAACACACAAC
ACTTTTGCCTGCAACCCTTCCTCTACCCTTCACATCAGCCTTCCAACGAA
GTTATATATCCTCCTACGAAGGACAACCATGACCACTACCTCTCGACCAC
GCCGCCCAATGGTGACCGCGAGTCTCGCCTTGCAACTGCTGGAGAGCGCC
GCACAGGGTATGCGCAGCACAGAGTGTTCGTCTCCCACCACCGCCTTCAA
CAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTTGTCCACAT
CAACCGCCGTCACCCAGCGAAAGATCGAGTCCCTCCAGCGCGCGTTGCGC
GAGACGACAGCGGCAGCAGCATCACCTCCAACTCACGACCCATCATACGC
AACGAAGGCGTCGTTGGTTTCGCCGACGAAGAACGTCAGCGCCGCTGCCA
GCACCCCCAGCTCCGATGACTACTCCTTGGGTTCCTGGGATGAGACAGAA
GACGACGACGAGGACGACGAGGATGACCAAGACAGAGGTCGCCTCGGAGC
GGCCGCCACGACCCTCTCAAGGCTTTCTCGCGAGGAGAGCTTGCCGCACC
ACGAAGAAGAAGAAGTGACGTACGGGGCGGATATCCGTCGACAGTTCTTT
GACGAGAGGTGAGGGTTCAGAGATGGGGGGGGTTGGCTTGCGCGGCAGTG
TCTGCTTCGCTCTAAGCGGCTATGTTCATGCAGCTGTGCAAGTCGTGTCT
TGCAGCGACAACGGTAGATGCTGGACCAGAGATTACATCAAGCAGCGTAA
ATGTAGAAATCAACGATTTGCTTTTGGTGACACACACGCGCGTAACACGT
GGCGAGCGATGAAAAATGCAGTTTTTTAAAATCAAGACTCGCATGCCAAC
TAACAGCGTCCCCGTGTTTTGCTGTGTCGTGACCCCGACCGGCGAGCACA
TCAGCCTTATCCTTATCTGGTGGCTGTCAGCCTGTCAGCTCCAAATGGAT
CCGACGCGGTCAACTGCTGCTAATATATGCCGATGTCTCCCTCATGACGC
TCCCACCTCCAGAAATGATTCCACCGCCCTGGACGAGTTCGACCACCCTG
CGCTAGCCGGCGCGGCGGCGGCCTTGCACAGATACGTGATCAGCGAGGGT
GATGTCGCCTTCCTCGAGAAGGCGTACGAGATTGCAAGGGGTGTCGCGGG
GTCGAAGCACAGCCTCACGGTGGCCTTCGATGCCTGCAGGATGGCACTCG
CAGTCGGGTGAGTCAGTTACAGAAAAATATTCAGTGCGTTCGCCTGCCGT
TATTCGGTCGTGGGAGGCCTTGCCGCCCACGAAACGCCTTAATTCACACG
CAACATCAAGTCTTCAAACCGCCGGCGATATCTTAGTACCGGCTTTCTCT
GACGCCTCCGATACCTCCCTCTCGTCCCTCTCCAAAACCCTACAGATACG
TCCACACGCTCACCAAGGGTGCGCCCGACATGGCCAACACCTTCGCTAGG
GAGCACAGCCTCTGCAAGCTGGCCCAGTCTCTGAAGCCGTATTGGTCTCG
CTCTCCCCCATCAACCCCGGAAGCGGAGGTCGAGTGGGAGGAGTGCATGT
CGTCGCTGCTCGAGGTTGCGTCCAGCGTTGCCCTGATGACTGGCGAAAGG
GACGTGCTGTCTGTTCTCGACATCGAGGCCTACTCTGGCGTTACAGAGGT
GAGAATGCAACCGTCCCCGCCCGCTCTCTATTGAGTTTGTTTTCGTGGTA
AGTCCTCCTGTGACAAACTATTGGTATCAGGAAAATGGACTGCTGTATCA
CTGTGTCTCAGCCACCCCCCCCCGCTCCCAACGCTCTGTTGTGACAGGCA
ACCGGCGCGTACCTTGTGCGCAGGCCAGGGGTTCTGCAACAGTACCAGGA
CGTGGGAGGTACCTGCCTGCGCCAACATTTGCTCGGACCGGTAAGACCCA
TAAATGAGTAGATCTATAAGCAAGGTTCGACATGCAAACAAGCAATTTCT
CGCTCCGCGATGTTTTGCTGAATTGCCTCGCTAGATAAATCAGAGATGCA
TTCGCGTTTGAACCTATTGGTGTGAGATCGCAAGAGACGGTGAATGTTTG
ATGATGGCCGGGACATCGTCATTGGCTGCCATTTCTCACGTCACGTGGCA
GCCATTCAGCGAACATACCATTTCGCACAGGTACGCACAGGTACACGCAT
CTCACCGAACCACCCTTCAAATATCGCGCCTTTTCTCAGGTGACGAGAGA
ATATCCGGGCTCCGAGTAAACCTGCCGCGGGAAGCGAACACATCGACAAG
TTCCTACCCTTCTCTGATGAGGCCCCGGTTTTCGGTTGTTTGGGGGCGAA
CGGGGATGGGGAGATATCAAAATGTTTTCATCCCCGTGGTATGCGTTATA
TTTTGCCGTGAACTTGATTTGGTTCCCAACTTTGCAAATGCCTTTGTTTT
GTACCGTTTTTCCAAAGGAAGTTTCGTGTTCGTTCGACTTGTTGCGCACT
TCGGCCAAGCTTCCAGTTTTGAACCGTGAATACTGGTACTGCTGTACAGC
TTTTAGGATTCACCTCGTGATGTGCCTGGCTTTCAGTTAGGGGCAAGTAC
GCTTGCCATTTTTTTGTCCGTTTTCATCGTGCTGTGTTGCTTGTAAGTTG
TTCAAGTCTTGTTAATTGTTTGGCGCTGGGTCTGTATTTCGTGCTGTGTT
TAATTGTGACAAGTGGTGTGCTCGTGTTCGTTTCCCATTCGTTTTATACT
CCGTATTCGTTATGTAGATTCAAAAGCACGATAGAAAAAGCGTTCGATGA
AGTTCGTGGAGGAATGAGGCCCAGGTTGACATTGCAGTCGGGTATCCCCC
TCCTGGTGTTTTTCGCAACTCGATGTGTCCGGTGGCTGTTGTGTGGGATG
CATCGAGGGTGGTGTCGAATTTAGTGTTACCGAAAATCTGCACAGATAAC
AATTTCAGGTCCAATATTGGGCATTCGAACTCAAACCATC
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Coding sequence (CDS) from alignment at C-linearis_contig10:2958946..2961985-

>mRNA_C-linearis_contig10.624.1 ID=mRNA_C-linearis_contig10.624.1|Name=mRNA_C-linearis_contig10.624.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2202bp|location=Sequence derived from alignment at C-linearis_contig10:2958946..2961985- (Chordaria linearis ClinC8C monoicous)
ATGACCACTACCTCTCGACCACGCCGCCCAATGGTGACCGCGAGTCTCGC
CTTGCAACTGCTGGAGAGCGCCGCACAGGGTATGCGCAGCACAGAGTGTT
CGTCTCCCACCACCGCCTTCAACAGCAGAAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCGACTTGTCCACATCAACCGCCGTCACCCAGCGAAAGATCGA
GTCCCTCCAGCGCGCGTTGCGCGAGACGACAGCGGCAGCAGCATCACCTC
CAACTCACGACCCATCATACGCAACGAAGGCGTCGTTGGTTTCGCCGACG
AAGAACGTCAGCGCCGCTGCCAGCACCCCCAGCTCCGATGACTACTCCTT
GGGTTCCTGGGATGAGACAGAAGACGACGACGAGGACGACGAGGATGACC
AAGACAGAGGTCGCCTCGGAGCGGCCGCCACGACCCTCTCAAGGCTTTCT
CGCGAGGAGAGCTTGCCGCACCACGAAGAAGAAGAAGTGACGTACGGGGC
GGATATCCGTCGACAGTTCTTTGACGAGAGATGACCACTACCTCTCGACC
ACGCCGCCCAATGGTGACCGCGAGTCTCGCCTTGCAACTGCTGGAGAGCG
CCGCACAGGGTATGCGCAGCACAGAGTGTTCGTCTCCCACCACCGCCTTC
AACAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTTGTCCAC
ATCAACCGCCGTCACCCAGCGAAAGATCGAGTCCCTCCAGCGCGCGTTGC
GCGAGACGACAGCGGCAGCAGCATCACCTCCAACTCACGACCCATCATAC
GCAACGAAGGCGTCGTTGGTTTCGCCGACGAAGAACGTCAGCGCCGCTGC
CAGCACCCCCAGCTCCGATGACTACTCCTTGGGTTCCTGGGATGAGACAG
AAGACGACGACGAGGACGACGAGGATGACCAAGACAGAGGTCGCCTCGGA
GCGGCCGCCACGACCCTCTCAAGGCTTTCTCGCGAGGAGAGCTTGCCGCA
CCACGAAGAAGAAGAAGTGACGTACGGGGCGGATATCCGTCGACAGTTCT
TTGACGAGAGAAATGATTCCACCGCCCTGGACGAGTTCGACCACCCTGCG
CTAGCCGGCGCGGCGGCGGCCTTGCACAGATACGTGATCAGCGAGGGTGA
TGTCGCCTTCCTCGAGAAGGCGTACGAGATTGCAAGGGGTGTCGCGGGGT
CGAAGCACAGCCTCACGGTGGCCTTCGATGCCTGCAGGATGGCACTCGCA
GTCGGAAATGATTCCACCGCCCTGGACGAGTTCGACCACCCTGCGCTAGC
CGGCGCGGCGGCGGCCTTGCACAGATACGTGATCAGCGAGGGTGATGTCG
CCTTCCTCGAGAAGGCGTACGAGATTGCAAGGGGTGTCGCGGGGTCGAAG
CACAGCCTCACGGTGGCCTTCGATGCCTGCAGGATGGCACTCGCAGTCGG
ATACGTCCACACGCTCACCAAGGGTGCGCCCGACATGGCCAACACCTTCG
CTAGGGAGCACAGCCTCTGCAAGCTGGCCCAGTCTCTGAAGCCGTATTGG
TCTCGCTCTCCCCCATCAACCCCGGAAGCGGAGGTCGAGTGGGAGGAGTG
CATGTCGTCGCTGCTCGAGGTTGCGTCCAGCGTTGCCCTGATGACTGGCG
AAAGGGACGTGCTGTCTGTTCTCGACATCGAGGCCTACTCTGGCGTTACA
GAGATACGTCCACACGCTCACCAAGGGTGCGCCCGACATGGCCAACACCT
TCGCTAGGGAGCACAGCCTCTGCAAGCTGGCCCAGTCTCTGAAGCCGTAT
TGGTCTCGCTCTCCCCCATCAACCCCGGAAGCGGAGGTCGAGTGGGAGGA
GTGCATGTCGTCGCTGCTCGAGGTTGCGTCCAGCGTTGCCCTGATGACTG
GCGAAAGGGACGTGCTGTCTGTTCTCGACATCGAGGCCTACTCTGGCGTT
ACAGAGGCAACCGGCGCGTACCTTGTGCGCAGGCCAGGGGTTCTGCAACA
GTACCAGGACGTGGGAGGTACCTGCCTGCGCCAACATTTGCTCGGACCGG
CAACCGGCGCGTACCTTGTGCGCAGGCCAGGGGTTCTGCAACAGTACCAG
GACGTGGGAGGTACCTGCCTGCGCCAACATTTGCTCGGACCGGTGACGAG
AGAATATCCGGGCTCCGAGTAAGTGACGAGAGAATATCCGGGCTCCGAGT
AA
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