prot_C-linearis_contig10.624.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.624.1
Unique Nameprot_C-linearis_contig10.624.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length367
Homology
BLAST of mRNA_C-linearis_contig10.624.1 vs. uniprot
Match: D7G8S7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S7_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 1.490e-84
Identity = 145/252 (57.54%), Postives = 178/252 (70.63%), Query Frame = 0
Query:  104 SAAASTPSSDDYSLGSWDETEDDXXXXXXXXXXGRLGAAATTLSRLSREESLPHHEEEEVTYGADIRRQFFDERNDSTALDEFDHPALAGAAAALHRYVISEGDVAFLEKAYEIARGVAGSKHSLTVAFDACRMALAVGYVHTLTKGAPDMANTFAREHSLCKLAQSLKPYWSRSPPSTPEAEVEWEECMSSLLEVASSVALMTGERDVLSVLDIEAYSGVTEATGAYLVRRPGVLQQYQDVGGTCLRQHLL 355
            S  AS  SSD+ S+ SW+E +D            RLGA A T++ +  +++L    E+  +     ++QF +ER+D+  L+EFDHPAL GA AALH Y  S+GD +FLEKAYE+AR VAGSKH+L V+FDACR+ LAVGYVH L KGAPDMAN FA +HSL KLAQSLKPYWSRSP  TP+ E EWEEC+SSLLEV SS+ALMT E D+ +VLD + +  V EA G YL RRP VLQ YQDVG  CLR + L
Sbjct:    5 SRPASFGSSDESSVASWEEGDDGLVFEDRH----RLGAGARTVNSI--DDTLLLQLEQRSSSIRQQQQQFCNERSDTNPLEEFDHPALQGAVAALHGYAASDGDTSFLEKAYELARTVAGSKHTLGVSFDACRVVLAVGYVHILIKGAPDMANNFAHQHSLPKLAQSLKPYWSRSPSPTPDEEAEWEECVSSLLEVTSSIALMTDEGDIWTVLDRDPFGEVAEAMGLYLARRPNVLQHYQDVGSACLRNNFL 250          
BLAST of mRNA_C-linearis_contig10.624.1 vs. uniprot
Match: A0A6H5KDE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE7_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 1.170e-79
Identity = 177/367 (48.23%), Postives = 216/367 (58.86%), Query Frame = 0
Query:    6 RPRRPMVTASLALQLLESAAQGMRSTECSSPTTAFNSRSSXXXXXXXXXLSTSTAVTQRKIESLQRALRE-------TTAAAASPP-THDPSYATKASLVSPTKNVSAA-------ASTPSSDDYSLGSWDETEDDXXXXXXXXXXGRLGAAATTLSRLSREESLPHHEEEEVTYGADIRRQ--FFDERNDSTALDEFDHPALAGAAAALHRYVISEGDVAFLEKAYEIARGVAGSKHSLTVAFDACRMALAVGYVHTLTKGAPDMANTFAREHSLCKLAQSLKPYWSRSPPSTPEAEVEWEECMSSLLEVASSVALMTGERDVLSVLDIEAYSGVTEATGAYLVRRPGVLQQYQDVGGTCLRQHLL 355
            R  R  +TA LAL+LLE   + + S    SP +  +                      RK  SLQRALR        TTA       T D S+ T +       N + A       AS  SSD+ S+ SW E EDD           R GA A+T+  +  +++L    E+  +    IRRQ    +E +D+  L+EFDHPAL GA AALH Y  S+GD  FLEKAYE+AR VAGSKH+L V+FDACR+ LAVGYVH L KGAPD+A+ FA +HSL KLAQSLKPYWSRSP  TP+ E EWEEC+SSLLEV SS+ALMT ERD+ +VLD + +  V EA G YLVRRP  LQQYQDVG  CLR + L
Sbjct:    8 RQPRKHLTARLALKLLEDTPENLHSNTGGSPVSPVH----------------------RKTVSLQRALRNSGDIIAPTTAKGKGASFTLDLSHTTASXXXXXXXNSTLATIVDSRPASFGSSDESSVASW-EGEDDGFVFEDRH---RSGAGASTVDFI--DDTLLLQLEQRSSA---IRRQQQSCNEGSDTNPLEEFDHPALQGAIAALHGYAASDGDTVFLEKAYELARAVAGSKHTLGVSFDACRVVLAVGYVHILIKGAPDLADKFAHQHSLPKLAQSLKPYWSRSPSPTPDEEAEWEECVSSLLEVTSSIALMTDERDIWTVLDRDPFGEVAEAMGLYLVRRPNALQQYQDVGSACLRHNFL 343          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.624.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8S7_ECTSI1.490e-8457.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDE7_9PHAE1.170e-7948.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..366

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2959667..2961807 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.624.1mRNA_C-linearis_contig10.624.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 2958946..2961985 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.624.1 ID=prot_C-linearis_contig10.624.1|Name=mRNA_C-linearis_contig10.624.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=367bp
MTTTSRPRRPMVTASLALQLLESAAQGMRSTECSSPTTAFNSRSSSSSSS
SSSDLSTSTAVTQRKIESLQRALRETTAAAASPPTHDPSYATKASLVSPT
KNVSAAASTPSSDDYSLGSWDETEDDDEDDEDDQDRGRLGAAATTLSRLS
REESLPHHEEEEVTYGADIRRQFFDERNDSTALDEFDHPALAGAAAALHR
YVISEGDVAFLEKAYEIARGVAGSKHSLTVAFDACRMALAVGYVHTLTKG
APDMANTFAREHSLCKLAQSLKPYWSRSPPSTPEAEVEWEECMSSLLEVA
SSVALMTGERDVLSVLDIEAYSGVTEATGAYLVRRPGVLQQYQDVGGTCL
RQHLLGPVTREYPGSE*
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