mRNA_C-linearis_contig10.622.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.622.1
Unique NamemRNA_C-linearis_contig10.622.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Match: D7G8S5_ECTSI (V-type proton ATPase proteolipid subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S5_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 1.860e-77
Identity = 151/165 (91.52%), Postives = 158/165 (95.76%), Query Frame = 1 
Query:   85 LETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANSFSSYSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYSCE 579
            +ETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL+G+I  PS +   N+FSS+SGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQ SYSC+
Sbjct:    1 METCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGAIGMPSDT--GNTFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQQSYSCD 163
[Close]
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Match: A0A835Z1C3_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1C3_9STRA)

HSP 1 Score: 234 bits (596), Expect = 5.340e-72
Identity = 145/165 (87.88%), Postives = 152/165 (92.12%), Query Frame = 1 
Query:   82 SLETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANSFSSYSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYSC 576
            SLETCPSSAAFFGFMG A+++VF NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL GSI+ P +      FSS+SGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEAL LYG+IVALILSQ SYSC
Sbjct:    4 SLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTK-FSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 167
[Close]
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Match: F0YK80_AURAN (V-type proton ATPase proteolipid subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YK80_AURAN)

HSP 1 Score: 224 bits (571), Expect = 3.370e-68
Identity = 138/167 (82.63%), Postives = 152/167 (91.02%), Query Frame = 1 
Query:   82 SLETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANS-FSSYSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYSCE 579
            S ETCP+SA FFGFMGV S++VF NIGAAYGTAKSGVGI+SMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL G+I+ P + +   + FSS+SGYA+LAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQE+LFVGMILILIFAEALGLYG+IVALILSQ S  C+
Sbjct:    6 STETCPTSAPFFGFMGVTSALVFANIGAAYGTAKSGVGIASMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGAITKPDAGSGGTTKFSSFSGYAYLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQQSADCQ 172
[Close]
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Match: A0A7S3GT47_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT47_9STRA)

HSP 1 Score: 219 bits (557), Expect = 4.320e-66
Identity = 135/170 (79.41%), Postives = 152/170 (89.41%), Query Frame = 1 
Query:   70 MSD-FSLETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANSFSSYSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYSC 576
            MSD  S ETCP+SA FFGFMGV +++ F NIGAAYGTAKSGVGI+SMGVM+PGLVM+NIIPVVMAGVLGIYGLIVAVI+ GSI+ PS+   A  +SS++GYA L+AGLCCGLSG XXXXXXXXX DAGVRAVGQQE+LFVGMILILIFAEALGLYG+IVALILSQ S+SC
Sbjct:    1 MSDTVSRETCPTSAPFFGFMGVTAALCFANIGAAYGTAKSGVGIASMGVMHPGLVMKNIIPVVMAGVLGIYGLIVAVIIQGSITVPSADG-ATKYSSFTGYAHLSAGLCCGLSGLXXXXXXXXXGDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQQSFSC 169
[Close]
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Match: A0A7S2RWN8_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWN8_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.960e-64
Identity = 132/163 (80.98%), Postives = 149/163 (91.41%), Query Frame = 1 
Query:   88 ETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANSFSSYSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYSC 576
            E CP+SA FFGFMGV++++VF NIGAAYGTAKSGVGI+SMGVM P LVMRNIIPV+MAGVLGIYGLIVAVIL GSI+ P+++   + FSS+SG+AFLAAGLCCGLSGXXXXXXXXXXX AGVRAVGQQE+LFVG+ILILIFAEALGLYG+IVALILSQ S SC
Sbjct:    4 ELCPTSAPFFGFMGVSAALVFANIGAAYGTAKSGVGIASMGVMKPNLVMRNIIPVIMAGVLGIYGLIVAVILNGSITKPANNE--SKFSSFSGFAFLAAGLCCGLSGXXXXXXXXXXXXAGVRAVGQQEKLFVGVILILIFAEALGLYGLIVALILSQQSVSC 164
[Close]
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Match: B8BTR9_THAPS (V-type proton ATPase proteolipid subunit n=19 Tax=Ochrophyta TaxID=2696291 RepID=B8BTR9_THAPS)

HSP 1 Score: 213 bits (542), Expect = 5.960e-64
Identity = 132/165 (80.00%), Postives = 147/165 (89.09%), Query Frame = 1 
Query:   85 LETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANSFSSYSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYSCE 579
            +ETCP+SA FFGFMGV +++VF NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ GSI AP +    + +S Y+G+A LAAGLCCGL  XXXXXXXXXXX  GVRAVGQQE+LFVGMILILIFAEALGLYG+IVALILSQ+S+ CE
Sbjct:    1 METCPASAPFFGFMGVTAALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSIVAPQNGL--SQYSLYTGFAHLAAGLCCGLXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSFVCE 163
[Close]
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Match: A0A7S2GLL8_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLL8_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.960e-63
Identity = 131/171 (76.61%), Postives = 147/171 (85.96%), Query Frame = 1 
Query:   67 TMSDFSLETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANSFSSYSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYSCE 579
            T+   ++E CP+ A FFGFMGV+S++VF NIGAAYGTAKSG+GI+SMGVM P LVMRNIIPV+MAGVLGIYGLIVAVIL GSI+ P+       FSSYSG+AFLAAGLCCGLSGXXXXXXXXXXX  GVRAVGQQE+LFVG+ILILIFAEALGLYG+IVALILS   Y CE
Sbjct:    4 TLLSTAVEACPTYAPFFGFMGVSSALVFANIGAAYGTAKSGIGIASMGVMKPELVMRNIIPVIMAGVLGIYGLIVAVILQGSITKPTEGV--TKFSSYSGFAFLAAGLCCGLSGXXXXXXXXXXXXXGVRAVGQQEKLFVGVILILIFAEALGLYGLIVALILSMQIYECE 172
[Close]
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Match: A0A7S3LI96_9STRA (V-type proton ATPase proteolipid subunit n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LI96_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.340e-63
Identity = 132/165 (80.00%), Postives = 147/165 (89.09%), Query Frame = 1 
Query:   85 LETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANSFSSYSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYSCE 579
            +ETCP+SA FFGFMGV S++VF NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ GSI +P +    + +S Y+G+A LAAGLCCGL  XXXXXXXXXXX  GVRAVGQQE+LFVGMILILIFAEALGLYG+IVALILSQ+S+ CE
Sbjct:   54 METCPASAPFFGFMGVTSALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSILSPQNGL--SQYSLYTGFAHLAAGLCCGLXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSFVCE 216
[Close]
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Match: A0A7R9WX88_9STRA (V-type proton ATPase proteolipid subunit n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WX88_9STRA)

HSP 1 Score: 213 bits (542), Expect = 7.850e-63
Identity = 135/170 (79.41%), Postives = 146/170 (85.88%), Query Frame = 1 
Query:   67 TMSDFSLETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANSFSSYSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYSC 576
            TMS    ETCP+SA FFGFMGV S++VF NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ GSI+AP     A  +S Y+G+A LAAGLCC    XXXXXXXXXXX  GVRAVGQQE+LFVGMILILIFAEALGLYG+IVALILSQ+SY C
Sbjct:   76 TMSSAITETCPASAPFFGFMGVTSALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSITAPQGGVSA--YSLYTGFAHLAAGLCCXXXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSYEC 243
[Close]
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Match: A0A7R9UBU4_9STRA (V-type proton ATPase proteolipid subunit n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7R9UBU4_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.020e-61
Identity = 131/178 (73.60%), Postives = 150/178 (84.27%), Query Frame = 1 
Query:   55 PSPVTMSDFS---LETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANSFSSYSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYSCE 579
            P  V+MSD +    E CP SA FFGFMGVAS++VF NIGAAYGTAKSGVGI+SMGV NP  +MRN+IPVVMAGVLGIYGLIVAVIL   +  P+  +   ++SSY+G+A LAAGLCCGLSGXXXXXXXXXXX  GVRAVGQQ++LFVGMILILIFAEALGLYG+IVA+ILSQ S+SCE
Sbjct:   31 PPVVSMSDTTDSTTENCPLSAPFFGFMGVASALVFANIGAAYGTAKSGVGIASMGVTNPEKIMRNLIPVVMAGVLGIYGLIVAVILNQGLETPTEGSGKTTYSSYTGFAHLAAGLCCGLSGXXXXXXXXXXXXXGVRAVGQQDKLFVGMILILIFAEALGLYGLIVAIILSQQSFSCE 208
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8S5_ECTSI1.860e-7791.52V-type proton ATPase proteolipid subunit n=1 Tax=E... [more]
A0A835Z1C3_9STRA5.340e-7287.88V-type proton ATPase proteolipid subunit n=1 Tax=T... [more]
F0YK80_AURAN3.370e-6882.63V-type proton ATPase proteolipid subunit n=2 Tax=P... [more]
A0A7S3GT47_9STRA4.320e-6679.41V-type proton ATPase proteolipid subunit n=1 Tax=S... [more]
A0A7S2RWN8_9STRA3.960e-6480.98V-type proton ATPase proteolipid subunit n=1 Tax=R... [more]
B8BTR9_THAPS5.960e-6480.00V-type proton ATPase proteolipid subunit n=19 Tax=... [more]
A0A7S2GLL8_9STRA2.960e-6376.61V-type proton ATPase proteolipid subunit n=1 Tax=D... [more]
A0A7S3LI96_9STRA3.340e-6380.00V-type proton ATPase proteolipid subunit n=2 Tax=A... [more]
A0A7R9WX88_9STRA7.850e-6379.41V-type proton ATPase proteolipid subunit n=2 Tax=C... [more]
A0A7R9UBU4_9STRA1.020e-6173.60V-type proton ATPase proteolipid subunit n=2 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2949086..2953470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.5
Seed ortholog evalue2.8e-64
Seed eggNOG ortholog2880.D7G8S5
Preferred nameATP6V0C
KEGG koko:K02155,ko:K04345,ko:K15542
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko01522,ko03015,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04142,ko04145,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04721,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04966,ko04970,ko04971,ko04976,ko05012,ko05020,ko05030,ko05031,ko05032,ko05110,ko05120,ko05146,ko05152,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05323,ko05414,map00190,map01100,map01522,map03015,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04142,map04145,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04721,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04966,map04970,map04971,map04976,map05012,map05020,map05030,map05031,map05032,map05110,map05120,map05146,map05152,map05165,map05166,map05169,map05200,map05203,map05205,map05323,map05414
KEGG ModuleM00160,M00695
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000041,GO:0000220,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006403,GO:0006605,GO:0006623,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006826,GO:0006873,GO:0006875,GO:0006878,GO:0006879,GO:0006885,GO:0006886,GO:0006887,GO:0006897,GO:0006955,GO:0006996,GO:0007033,GO:0007034,GO:0007035,GO:0007040,GO:0007042,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019899,GO:0019953,GO:0019954,GO:0022414,GO:0022603,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030139,GO:0030141,GO:0030177,GO:0030587,GO:0030641,GO:0030659,GO:0030666,GO:0030667,GO:0030670,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031625,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032940,GO:0032991,GO:0033036,GO:0033176,GO:0033177,GO:0033179,GO:0033181,GO:0033227,GO:0033365,GO:0033572,GO:0034220,GO:0034613,GO:0035577,GO:0035751,GO:0036230,GO:0036442,GO:0042119,GO:0042221,GO:0042582,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043434,GO:0043492,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045055,GO:0045169,GO:0045184,GO:0045321,GO:0045335,GO:0045851,GO:0046903,GO:0046907,GO:0046916,GO:0046933,GO:0046961,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0055065,GO:0055067,GO:0055070,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060142,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0070838,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0072512,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090662,GO:0090702,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099131,GO:0099132,GO:0099503,GO:0101002,GO:0101003,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.ATP hydrolysis coupled proton transport
EggNOG OGsCOG0636@1,KOG0232@2759
Ec32 ortholog descriptionV-ATPase proteolipid subunit C-like domain
Ec32 orthologEc-22_002820.1
EC2.7.11.11
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036
Exons4
Model size1394
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.622.1prot_C-linearis_contig10.622.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2949155..2952658 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927347.4997993-UTR-C-linearis_contig10:2949085..29491541622927347.4997993-UTR-C-linearis_contig10:2949085..2949154Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2949086..2949154 +
1690879642.8349888-UTR-C-linearis_contig10:2949085..29491541690879642.8349888-UTR-C-linearis_contig10:2949085..2949154Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2949086..2949154 +
1622927347.557627-UTR-C-linearis_contig10:2952658..29534701622927347.557627-UTR-C-linearis_contig10:2952658..2953470Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2952659..2953470 +
1690879642.886602-UTR-C-linearis_contig10:2952658..29534701690879642.886602-UTR-C-linearis_contig10:2952658..2953470Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2952659..2953470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927347.5131528-CDS-C-linearis_contig10:2949154..29492391622927347.5131528-CDS-C-linearis_contig10:2949154..2949239Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2949155..2949239 +
1690879642.8506448-CDS-C-linearis_contig10:2949154..29492391690879642.8506448-CDS-C-linearis_contig10:2949154..2949239Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2949155..2949239 +
1622927347.5253906-CDS-C-linearis_contig10:2950835..29509941622927347.5253906-CDS-C-linearis_contig10:2950835..2950994Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2950836..2950994 +
1690879642.8616118-CDS-C-linearis_contig10:2950835..29509941690879642.8616118-CDS-C-linearis_contig10:2950835..2950994Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2950836..2950994 +
1622927347.5355525-CDS-C-linearis_contig10:2951678..29517691622927347.5355525-CDS-C-linearis_contig10:2951678..2951769Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2951679..2951769 +
1690879642.8697712-CDS-C-linearis_contig10:2951678..29517691690879642.8697712-CDS-C-linearis_contig10:2951678..2951769Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2951679..2951769 +
1622927347.5480618-CDS-C-linearis_contig10:2952480..29526581622927347.5480618-CDS-C-linearis_contig10:2952480..2952658Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2952481..2952658 +
1690879642.8781457-CDS-C-linearis_contig10:2952480..29526581690879642.8781457-CDS-C-linearis_contig10:2952480..2952658Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2952481..2952658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.622.1

>prot_C-linearis_contig10.622.1 ID=prot_C-linearis_contig10.622.1|Name=mRNA_C-linearis_contig10.622.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=171bp
MSDFSLETCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMN
PGLVMRNIIPVVMAGVLGIYGLIVAVILAGSISAPSSSTYANSFSSYSGY
AFLAAGLCCGLSGLAAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEA
LGLYGMIVALILSQSSYSCE*
back to top

mRNA from alignment at C-linearis_contig10:2949086..2953470+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.622.1 ID=mRNA_C-linearis_contig10.622.1|Name=mRNA_C-linearis_contig10.622.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4385bp|location=Sequence derived from alignment at C-linearis_contig10:2949086..2953470+ (Chordaria linearis ClinC8C monoicous)
ACCCACAACACCGCTATTTCTCTCTCCTCATCCTCTGTTTTTGTTGCTTA
GCACCCCAGTCCAGTAACCATGAGCGACTTCAGCTTGGAAACCTGCCCTT
CCTCGGCGGCCTTCTTCGGCTTCATGGGCGTTGCTTCGTCTATGGTGTTC
GGAAGTGAGTGCATAACGTGGTCAGCAAAGTGTGAAGAAAAGGCGCTCGA
TGGGGGTGGGGGTGGGCGAGAGAGATAGAGACAGGCACGAGAGGCATGGC
CCGGCCATGCAGGCTGGCGCCGCTAATCTCTCTTGCTACTGTTCCACCAC
AACAGTGGTGCTCTGAGTCCATCTCAGTAGGCGGTAATGCACGCGTGCAG
AGCCCTGCGCGTGCACTGCATTGATGTTCGGAAGTTTAGGGTGGATAAAA
TGAGAGCCGCCGACCTGGTGCTCGGTTCTTCGCTCCGCTCAGAAGGTACC
GTATGTTGCCAATGGGCCGCGGGCCGAAGTCACTCTGAGCAAGCTTTCCA
TGCTAGAAATCATGCCAATCCTGTGTGGGTGGAGTTACTACTGCTGTGGG
TCACGCCTGGTGCTGGTTATATTGTCGTTGCAAAGCGCACCGGAGGCAGA
GGTCATTGTTGGTGCATCCGAACCGTTTGGGCAGGAGGCTTTGTCTCTCT
TTTGAAACACACACTCACACAAACACACACACACAGCCTCGGGGCCGCAA
AAGAACAACAGCCACGCTTTGCTCGTACGGGCGTGAAATACTTCCACCGA
GCGACTGCCAGCCAGTTTTCTGATCTGATCAGACAAACAGGTTTTGACTG
CTCGTGGGTACATATGTCACGTGTTGATCGGTCTGTCTCCGTCGTCACTT
TTTGGTGAAAGGAAAATGAAGTACAAAGGCGGCCCTGCTTCCCTCGCCGA
ACTCGCACAGATTGCAGCGGCCTCGGACCGCCGGAGCACGTTGCGGAATC
TCATGCAGTTGTGTTGCCATGGCCGCTGGCCTTTTCCCTCGATGTTTGTT
GATCAGCCGTCCGGAAAACCCAGGATGTTCTCTTATACACGCTCCTCACT
CAGTAGATGGGGTCGCGAGGGCAGGTTTCGCGAGTTTAGTACGCCCCGCA
CGTTGCGGCACCCGAAAGTAAGCAGTAGCTCTAGCACACGCCCCTTTTCG
CTCTGGTTGCATGTTTTGTGTTACAGAAGTGGCACGCCATCCCGCTTTTG
CGAGGGCTGCGATCGCGGACCTCTTGTTGATTTGGATCAACGACAGAGAA
GAGCGTGGTGCACGCTGGTTGATGGGAGCCACTGTTGTATCATACTCCAT
TCCAGGAACTGAAGTAGGAACCCTCAGCGTGGGGTGTGCAAGTTCACTTT
GTTGGAAGTGCCTGCTGACGCTGTCTTCTTGTTTTGGCTTCCATACATTG
TTGTTTTGTTCTACGTTTGTCTTTGTGTGCGCGCACGAACTGCTGTAGCA
GTGTTTGTCGGTGGGGTCGTCTGTAATTTATCGCGTGTGCGCCGCTTGTA
GCGACTCTGTTGACCAGTTCCGCAACTCGAGTCCATTACTGCTGTATTCC
ATAGTTCGGCGTGACATGAAAATACGCTCATGGGCTTTTCGGCCTTTGGC
GCGATTGCTTGAATAAACTTGGCCATCAACCCAAGGAACACGTGTGTAGC
TGCATGCTCACGCGCCCAACGTAATCGTCTTCCTCCTCCTCTTGTCTTCT
TCTCCCCCGACCCCTTTCCCGCTCGCGAACATTTGATGGTTGAAACTCAG
ACATCGGCGCCGCGTACGGAACCGCCAAGTCCGGCGTGGGTATCTCCTCG
ATGGGTGTCATGAACCCCGGATTGGTGATGCGTAACATCATCCCCGTCGT
TATGGCTGGTGTGCTGGGTATCTACGGTCTCATCGTGGCAGTTATCCTTG
CGGGTTCAAGTGAGAGCGCCACACAGGAAATGTCGCAAGTCTCGGACGCG
TTCTGCGTGCCGAGCTTTCCCTCTCGTCCGCCTCCTACAGAAGAAGTAAC
AGCATTGTCGAGTTCACGCCCATGCACTTTGCATGACATCAGTTTGCTTG
TGGTAGACACGCGGCCGTCTATAAGCGCAGGACGACTTGTGTATGTTTTG
TGTGCTAAGTCCACCTTTGGCACGGTTTAGGGCGCGGATTAGGTTTTGAC
CAAATTTGAGGCATGTTTTGATGTTTTGCGACGGAAGCGGGGTGCACTCG
CGCTTGCCTCTGCACCCGGGTTGCGTTGATGGAGTAAACCAGACGGCACG
GCCCCACCCGGGCACGCCCCGACCCACGGGCTTGTTCGTGGCGTTCTTGA
CAAGTTGTTCCCGTGCTAAGCCCACGTTGGTTCTACTCCATGCCCTGCTG
TGAGCACTGACATGCGTAGCGCCGCAGCGAGGCCTCATGATGATATTGCC
GTGGGCGCCCGAGAAGAACACCCCTGTCTGCCTGCCAAGTTTTTGCCACA
CCACCAAGCGATTGTGTTTTCGTTGTGTGTTGTCGCGAACCTTACCACGC
CGTGGCCTGGTTGACGTGGTTGCCTTGCTGGACGTAATCTAAGCATTGTC
CTACGTACGTCCTGCACCCGATGTTTCTTGTTTTGCTTGACAGTCTCGGC
GCCTTCCTCATCCACCTACGCGAACAGCTTCTCTTCTTACTCTGGGTACG
CTTTCCTCGCCGCGGGGCTCTGCTGTGGACTCAGGTCAGTTATCTCGCAG
AATTTTTGCCCGAGAATGATGTTTGATGGTATCGCTGGAGAGAGAGTAGA
CGCGCTATCCTACGTAGTGCAGCAGTAGATCTTATCGACTTAGCTGCCAC
CTCCAACAACAGTCAGCGGTGTTGGAGCCGTTCCGTGTAGCTGTGGATCG
CCGCGTGGTTGATTGAAAATAACCTCACTCGCGCTGCAGTTTTTGGCCAG
CCTCCCTCACATAGTCGGCGGAGAGATCTGTCCACGGAATGACCCCCCCT
CATGTTCCTCAAGGTCACTACTAGTGAGGCTCTAGAAGCTGAACGATCGA
AAACGAGCTTTGAAAACTCTACTGCCCTTCCGACTCTCGACATGTAAGAA
CGCGAAATGCGGATCTAAGAGTGTATTCCGCAACGGATGGGCTAAGCGCG
GGATGTGAATATTGGACTCCGCCTGCGCTATGTATGTGCACGCGTCAAAG
CACGTACGCACAGGAACTGCGACAGCTGTGAGAGGGCTTCATTACGTTTC
ATGCCCTGCCCCCCGATTTCCGTAGCTTGTGACGACCTGAACCCCCGCCG
CCGGCTCTGTGTTTGTATCCTCACGACGCTGGTCCGTCATTGTCAGCGTT
CGTGTCTCTTAGCAAGTGTCTCAGTGCATCCCCCTCTCTTGGCGTCTGCT
CTTTTCCCTCTACCCATCCTTCGAAACCGCACGCCACAACAACAGCGGTC
TGGCAGCAGGCATGGCAATCGGAATCGTGGGAGACGCAGGGGTGCGCGCC
GTAGGACAACAGGAGCGTCTTTTCGTCGGCATGATCCTCATTCTTATCTT
CGCCGAAGCGCTCGGCCTTTACGGCATGATCGTAGCCCTTATCCTGTCGC
AGTCATCGTACTCCTGCGAGTAGATACCTGTTTTGTCTTTCTAATGTATC
TTTTTTTTCACTGCGGCGGTGCGGTAGAGGAACGGAGCGTTTCAAGGCGC
GCTAATAGGTTTTTTATGCCGTCTTGCGTGACGGAGTTTTCTCGCGTACA
TAGGAGCCGGCGGTGAAAGGCCCGATCAGATGCAGGGCAGGGCAAGAGAG
AGGTTGAAGTGGCTTTCATTCCGCTCGAGGGTTTGTTTCCGCTCTCTCTC
TCCTGCGGCTTTTGTCTTCCTTCTTTTTCCGTGATGGTTCCCGGAGCGCT
TGGTTGGTCACTTATTTTTGCCTCAAGGGTTGAAGTGTAAGGTTCAGCTT
TGCCCCTAGGAAACACTCCATGGGAATGGGTAGGTCCGGTGTTGTGGTGC
GCGGACACACAAACGTTGTACTTTAGTAGGAAGATACGGTGAAACCTTGG
GCGGGCGCGAGAGTGTGGTGATGAGAAAATTGCATTCCGCGTTTTTTTTC
TGTCACCTTGTTGTTTTGGGTGCTGAGAAACGTGGGTTGTCAGGATCTGA
CGGCCTGCCGCACCCTAGGTTAGGGTTATAGGGTTAGATTTGGCGTCTCC
TGCAATCGCTTCCAGCTCAAAGCGGTTTGATTTTGTTTTTTCGCCTCTAA
AGAAAAGCGTGGCAGAGAAAATGCGGTGGCAAACTTCCTTGGATGTTTTG
CACCACACATCTCGAAGGCTGTGTTGTTCACGGGACTAGCCCTCAACGTT
TTGTCCCTTCAAGCACAGTTCCATTTCTGCGGTGTCGTGCACCCCTCCAG
GCCTTACATGCCCTGTTTGGTTTCGCAATCCTGCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:2949086..2953470+

>mRNA_C-linearis_contig10.622.1 ID=mRNA_C-linearis_contig10.622.1|Name=mRNA_C-linearis_contig10.622.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at C-linearis_contig10:2949086..2953470+ (Chordaria linearis ClinC8C monoicous)
ATGAGCGACTTCAGCTTGGAAACCTGCCCTTCCTCGGCGGCCTTCTTCGG
CTTCATGGGCGTTGCTTCGTCTATGGTGTTCGGAAATGAGCGACTTCAGC
TTGGAAACCTGCCCTTCCTCGGCGGCCTTCTTCGGCTTCATGGGCGTTGC
TTCGTCTATGGTGTTCGGAAACATCGGCGCCGCGTACGGAACCGCCAAGT
CCGGCGTGGGTATCTCCTCGATGGGTGTCATGAACCCCGGATTGGTGATG
CGTAACATCATCCCCGTCGTTATGGCTGGTGTGCTGGGTATCTACGGTCT
CATCGTGGCAGTTATCCTTGCGGGTTCAAACATCGGCGCCGCGTACGGAA
CCGCCAAGTCCGGCGTGGGTATCTCCTCGATGGGTGTCATGAACCCCGGA
TTGGTGATGCGTAACATCATCCCCGTCGTTATGGCTGGTGTGCTGGGTAT
CTACGGTCTCATCGTGGCAGTTATCCTTGCGGGTTCAATCTCGGCGCCTT
CCTCATCCACCTACGCGAACAGCTTCTCTTCTTACTCTGGGTACGCTTTC
CTCGCCGCGGGGCTCTGCTGTGGACTCAGTCTCGGCGCCTTCCTCATCCA
CCTACGCGAACAGCTTCTCTTCTTACTCTGGGTACGCTTTCCTCGCCGCG
GGGCTCTGCTGTGGACTCAGCGGTCTGGCAGCAGGCATGGCAATCGGAAT
CGTGGGAGACGCAGGGGTGCGCGCCGTAGGACAACAGGAGCGTCTTTTCG
TCGGCATGATCCTCATTCTTATCTTCGCCGAAGCGCTCGGCCTTTACGGC
ATGATCGTAGCCCTTATCCTGTCGCAGTCATCGTACTCCTGCGAGTAGCG
GTCTGGCAGCAGGCATGGCAATCGGAATCGTGGGAGACGCAGGGGTGCGC
GCCGTAGGACAACAGGAGCGTCTTTTCGTCGGCATGATCCTCATTCTTAT
CTTCGCCGAAGCGCTCGGCCTTTACGGCATGATCGTAGCCCTTATCCTGT
CGCAGTCATCGTACTCCTGCGAGTAG
back to top