mRNA_C-linearis_contig10.613.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.613.1
Unique NamemRNA_C-linearis_contig10.613.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.613.1 vs. uniprot
Match: A0A6H5KRI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI2_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 1.480e-96
Identity = 182/330 (55.15%), Postives = 212/330 (64.24%), Query Frame = 1 
Query:   46 FDIEPLLTSRTTAVSSQSGFWNDVEAEKGGVHLDEGLKICGPENS-LPRALERVFGWLEEVEAGHQNSASRVDETIIDTGVLAALRAPSSSARQESDKVVSSKAVTKADFCLASRNQPSLAIGIYAHRVVCRPKWLLWSFSHAEYLVVTGTETELLSAWRTYSDFSSLADTAKSLRVRRAVECWHRLE-ALGYHRRTDPSSLRTAARLLNEFLATLLEGLPQEDIAVVADFARQPTTYVVVGVEGVGLRTTTTSRSADAAGQESGERGEPSVSSPQQTAPRRXXXXXXXXXXXG--------FGVAVRHPMKWQMIESSLTPAPRIWVGL 1005
            FDIEPLLTSRT   S  SGFW     E  GV L E        NS LPRALERVF WLEEVEAG  + AS VDETII+T  L +LRAP S +R+ESDKV++S AVTKADF +ASR+QPSLAIGIYAHR+VCR +WL WS  + EYLVVTGTETELLSAWR+Y DF SLA T ++LR   A   W RL+ ALG HRRTDP  +RT AR+L+ FL T+LE L   D+ V+ADF R+PTTY+VVGVE             D A  ES ++ EP  S+P++   R                     FG  V HPMKW+  ES L P PR  VGL
Sbjct:   33 FDIEPLLTSRTA--SFHSGFWESENGE--GVFLQEPTGCRQDNNSALPRALERVFCWLEEVEAGC-HGASGVDETIINTDALLSLRAPRSPSRRESDKVITSCAVTKADFSVASRDQPSLAIGIYAHRLVCRSRWLFWSKRYVEYLVVTGTETELLSAWRSYPDFYSLALTVRTLRAHGAANLWDRLDQALGPHRRTDPEGVRTEARVLSRFLTTVLEELVDTDVGVLADFVREPTTYLVVGVE-------------DIASDESEKQDEPLASTPEELEKRDSIRGVERCGRSISCPPADRIFGAKVGHPMKWETRESLLQPTPRSLVGL 344
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRI2_9PHAE1.480e-9655.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2882750..2884482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-22_002770.1
Exons4
Model size1008
Cds size1008
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.613.1prot_C-linearis_contig10.613.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2882750..2884482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927346.0579166-CDS-C-linearis_contig10:2882749..28830401622927346.0579166-CDS-C-linearis_contig10:2882749..2883040Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2882750..2883040 -
1690879641.5834749-CDS-C-linearis_contig10:2882749..28830401690879641.5834749-CDS-C-linearis_contig10:2882749..2883040Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2882750..2883040 -
1622927346.073673-CDS-C-linearis_contig10:2883380..28837611622927346.073673-CDS-C-linearis_contig10:2883380..2883761Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2883381..2883761 -
1690879641.6057935-CDS-C-linearis_contig10:2883380..28837611690879641.6057935-CDS-C-linearis_contig10:2883380..2883761Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2883381..2883761 -
1622927346.086344-CDS-C-linearis_contig10:2883985..28840781622927346.086344-CDS-C-linearis_contig10:2883985..2884078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2883986..2884078 -
1690879641.6286666-CDS-C-linearis_contig10:2883985..28840781690879641.6286666-CDS-C-linearis_contig10:2883985..2884078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2883986..2884078 -
1622927346.0984454-CDS-C-linearis_contig10:2884239..28844821622927346.0984454-CDS-C-linearis_contig10:2884239..2884482Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2884240..2884482 -
1690879641.6425266-CDS-C-linearis_contig10:2884239..28844821690879641.6425266-CDS-C-linearis_contig10:2884239..2884482Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2884240..2884482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.613.1

>prot_C-linearis_contig10.613.1 ID=prot_C-linearis_contig10.613.1|Name=mRNA_C-linearis_contig10.613.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=336bp
MPLTTHGRRVVSNLRFDIEPLLTSRTTAVSSQSGFWNDVEAEKGGVHLDE
GLKICGPENSLPRALERVFGWLEEVEAGHQNSASRVDETIIDTGVLAALR
APSSSARQESDKVVSSKAVTKADFCLASRNQPSLAIGIYAHRVVCRPKWL
LWSFSHAEYLVVTGTETELLSAWRTYSDFSSLADTAKSLRVRRAVECWHR
LEALGYHRRTDPSSLRTAARLLNEFLATLLEGLPQEDIAVVADFARQPTT
YVVVGVEGVGLRTTTTSRSADAAGQESGERGEPSVSSPQQTAPRRRSSRS
SSPGGGGFGVAVRHPMKWQMIESSLTPAPRIWVGL*
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mRNA from alignment at C-linearis_contig10:2882750..2884482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.613.1 ID=mRNA_C-linearis_contig10.613.1|Name=mRNA_C-linearis_contig10.613.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1733bp|location=Sequence derived from alignment at C-linearis_contig10:2882750..2884482- (Chordaria linearis ClinC8C monoicous)
ATGCCTCTTACAACTCATGGCCGTCGTGTGGTTTCCAATCTCAGGTTTGA
CATTGAGCCACTCCTCACATCGCGCACTACTGCTGTGTCATCCCAATCTG
GGTTCTGGAACGATGTGGAAGCAGAGAAGGGTGGCGTTCATTTAGACGAA
GGGTTGAAAATATGTGGTCCAGAGAATTCATTGCCACGTGCTCTGGAACG
CGTTTTCGGCTGGCTCGAGGAGGTGGAAGCAGGCCATCAGAATGTGAGAC
ACCAGGAGCCGTGTGTGGTCCCTGACCTCGAATCTATCATACTCGTCGAC
CCAAATCCTATATTTACACCAGTATGAATCATCAGCAACACCCATCATGC
GCATCTGAAGCAACAATCAATCGCACTTTGCTCGTGCGCGCCAAGACAAA
CCAGAGCGCAAGCCGTGTGGACGAGACCATTATCGACACAGGCGTGTTGG
CAGCCTTGCGAGCACCCAGTTCCTCAGCCAGGCAAGAGAGCGATAAGGTG
AGAATACAACGCGTGTGCATTCAAACCTCGAACCCGTGTTCAACTACAAA
TTTCTGGTGTGACGTATGGCCGGTGAATGTTGGCAATAGACTACGGTATT
TGTATGTATGCGCTCTCTTTCCTGCGGACGTGCATGCCCATCACCTCTCC
TAGAATCATTTCCTGTCCTGCTTGAACCTGGCTTGAAGAGTCCACGGCCC
AACGTCCACCTTTCAACTCAGGTTGTTTCTTCCAAGGCCGTGACGAAAGC
CGACTTCTGCTTGGCATCGAGGAATCAACCGTCTCTCGCCATTGGGATTT
ACGCCCATCGGGTAGTCTGTCGTCCGAAATGGCTGCTTTGGTCTTTCTCC
CACGCAGAGTATCTTGTAGTCACCGGCACTGAAACGGAGCTGCTGAGTGC
CTGGCGGACCTACTCAGACTTCTCCTCTCTCGCCGACACCGCGAAAAGCT
TGCGTGTGCGTAGAGCGGTCGAGTGCTGGCACCGGCTGGAAGCGCTAGGT
TACCACCGGAGGACGGATCCCTCGAGCCTAAGAACGGCGGCGCGGTTGCT
CAACGAATTTTTGGCAACATTGCTGGAGGGCCTACCTCAAGAGGATATTG
CGGTGAGGTTCTAACCCTCTGGTGGTGCATCTGGATAATTTTTCCTCCTG
TGTGTTTGTTTCTTGCGAGTGGTCGCAACGTGATCTTCATCTCGTCCGAG
CTCGGGGGATGATCGCTCCCTGTCAGGTGTCCATCCGTCTCTCGACACCA
GAGCGAAACCACACATAAACTCTCCGAAAGAGACTCAATTCAGATTTTTT
CGAACATATATAGAAGCTGTCGCAAATAATACGTTTGTAGCGACACCCGG
CTTTCCCTTTCTAGTCTTTTTTCAGACACCGCCCTGCTCTGCAGGGCTCA
ACTGTGGTGTTCACCAGCCGTGCCGCCCCCATTCGCAAGCAGGTGGTTGC
TGACTTCGCTCGCCAGCCGACGACGTACGTCGTTGTGGGCGTTGAAGGCG
TTGGGCTCCGTACCACTACCACCAGCCGCTCGGCCGATGCCGCTGGTCAA
GAATCTGGAGAGCGTGGCGAACCATCAGTCTCAAGCCCACAACAAACTGC
TCCCCGAAGAAGATCAAGCAGAAGTAGCTCTCCCGGAGGCGGGGGATTTG
GAGTGGCAGTCAGACACCCGATGAAGTGGCAAATGATCGAGTCCTCACTT
ACGCCCGCTCCTCGAATATGGGTCGGCTTGTAA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2882750..2884482-

>mRNA_C-linearis_contig10.613.1 ID=mRNA_C-linearis_contig10.613.1|Name=mRNA_C-linearis_contig10.613.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at C-linearis_contig10:2882750..2884482- (Chordaria linearis ClinC8C monoicous)
ATGCCTCTTACAACTCATGGCCGTCGTGTGGTTTCCAATCTCAGGTTTGA
CATTGAGCCACTCCTCACATCGCGCACTACTGCTGTGTCATCCCAATCTG
GGTTCTGGAACGATGTGGAAGCAGAGAAGGGTGGCGTTCATTTAGACGAA
GGGTTGAAAATATGTGGTCCAGAGAATTCATTGCCACGTGCTCTGGAACG
CGTTTTCGGCTGGCTCGAGGAGGTGGAAGCAGGCCATCAGAATATGCCTC
TTACAACTCATGGCCGTCGTGTGGTTTCCAATCTCAGGTTTGACATTGAG
CCACTCCTCACATCGCGCACTACTGCTGTGTCATCCCAATCTGGGTTCTG
GAACGATGTGGAAGCAGAGAAGGGTGGCGTTCATTTAGACGAAGGGTTGA
AAATATGTGGTCCAGAGAATTCATTGCCACGTGCTCTGGAACGCGTTTTC
GGCTGGCTCGAGGAGGTGGAAGCAGGCCATCAGAATAGCGCAAGCCGTGT
GGACGAGACCATTATCGACACAGGCGTGTTGGCAGCCTTGCGAGCACCCA
GTTCCTCAGCCAGGCAAGAGAGCGATAAGAGCGCAAGCCGTGTGGACGAG
ACCATTATCGACACAGGCGTGTTGGCAGCCTTGCGAGCACCCAGTTCCTC
AGCCAGGCAAGAGAGCGATAAGGTTGTTTCTTCCAAGGCCGTGACGAAAG
CCGACTTCTGCTTGGCATCGAGGAATCAACCGTCTCTCGCCATTGGGATT
TACGCCCATCGGGTAGTCTGTCGTCCGAAATGGCTGCTTTGGTCTTTCTC
CCACGCAGAGTATCTTGTAGTCACCGGCACTGAAACGGAGCTGCTGAGTG
CCTGGCGGACCTACTCAGACTTCTCCTCTCTCGCCGACACCGCGAAAAGC
TTGCGTGTGCGTAGAGCGGTCGAGTGCTGGCACCGGCTGGAAGCGCTAGG
TTACCACCGGAGGACGGATCCCTCGAGCCTAAGAACGGCGGCGCGGTTGC
TCAACGAATTTTTGGCAACATTGCTGGAGGGCCTACCTCAAGAGGATATT
GCGGTTGTTTCTTCCAAGGCCGTGACGAAAGCCGACTTCTGCTTGGCATC
GAGGAATCAACCGTCTCTCGCCATTGGGATTTACGCCCATCGGGTAGTCT
GTCGTCCGAAATGGCTGCTTTGGTCTTTCTCCCACGCAGAGTATCTTGTA
GTCACCGGCACTGAAACGGAGCTGCTGAGTGCCTGGCGGACCTACTCAGA
CTTCTCCTCTCTCGCCGACACCGCGAAAAGCTTGCGTGTGCGTAGAGCGG
TCGAGTGCTGGCACCGGCTGGAAGCGCTAGGTTACCACCGGAGGACGGAT
CCCTCGAGCCTAAGAACGGCGGCGCGGTTGCTCAACGAATTTTTGGCAAC
ATTGCTGGAGGGCCTACCTCAAGAGGATATTGCGGTGGTTGCTGACTTCG
CTCGCCAGCCGACGACGTACGTCGTTGTGGGCGTTGAAGGCGTTGGGCTC
CGTACCACTACCACCAGCCGCTCGGCCGATGCCGCTGGTCAAGAATCTGG
AGAGCGTGGCGAACCATCAGTCTCAAGCCCACAACAAACTGCTCCCCGAA
GAAGATCAAGCAGAAGTAGCTCTCCCGGAGGCGGGGGATTTGGAGTGGCA
GTCAGACACCCGATGAAGTGGCAAATGATCGAGTCCTCACTTACGCCCGC
TCCTCGAATATGGGTCGGCTTGTAAGTGGTTGCTGACTTCGCTCGCCAGC
CGACGACGTACGTCGTTGTGGGCGTTGAAGGCGTTGGGCTCCGTACCACT
ACCACCAGCCGCTCGGCCGATGCCGCTGGTCAAGAATCTGGAGAGCGTGG
CGAACCATCAGTCTCAAGCCCACAACAAACTGCTCCCCGAAGAAGATCAA
GCAGAAGTAGCTCTCCCGGAGGCGGGGGATTTGGAGTGGCAGTCAGACAC
CCGATGAAGTGGCAAATGATCGAGTCCTCACTTACGCCCGCTCCTCGAAT
ATGGGTCGGCTTGTAA
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