Homology
BLAST of mRNA_C-linearis_contig10.613.1 vs. uniprot
Match: A0A6H5KRI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI2_9PHAE) HSP 1 Score: 298 bits (764), Expect = 1.480e-96 Identity = 182/330 (55.15%), Postives = 212/330 (64.24%), Query Frame = 1 Query: 46 FDIEPLLTSRTTAVSSQSGFWNDVEAEKGGVHLDEGLKICGPENS-LPRALERVFGWLEEVEAGHQNSASRVDETIIDTGVLAALRAPSSSARQESDKVVSSKAVTKADFCLASRNQPSLAIGIYAHRVVCRPKWLLWSFSHAEYLVVTGTETELLSAWRTYSDFSSLADTAKSLRVRRAVECWHRLE-ALGYHRRTDPSSLRTAARLLNEFLATLLEGLPQEDIAVVADFARQPTTYVVVGVEGVGLRTTTTSRSADAAGQESGERGEPSVSSPQQTAPRRXXXXXXXXXXXG--------FGVAVRHPMKWQMIESSLTPAPRIWVGL 1005
FDIEPLLTSRT S SGFW E GV L E NS LPRALERVF WLEEVEAG + AS VDETII+T L +LRAP S +R+ESDKV++S AVTKADF +ASR+QPSLAIGIYAHR+VCR +WL WS + EYLVVTGTETELLSAWR+Y DF SLA T ++LR A W RL+ ALG HRRTDP +RT AR+L+ FL T+LE L D+ V+ADF R+PTTY+VVGVE D A ES ++ EP S+P++ R FG V HPMKW+ ES L P PR VGL
Sbjct: 33 FDIEPLLTSRTA--SFHSGFWESENGE--GVFLQEPTGCRQDNNSALPRALERVFCWLEEVEAGC-HGASGVDETIINTDALLSLRAPRSPSRRESDKVITSCAVTKADFSVASRDQPSLAIGIYAHRLVCRSRWLFWSKRYVEYLVVTGTETELLSAWRSYPDFYSLALTVRTLRAHGAANLWDRLDQALGPHRRTDPEGVRTEARVLSRFLTTVLEELVDTDVGVLADFVREPTTYLVVGVE-------------DIASDESEKQDEPLASTPEELEKRDSIRGVERCGRSISCPPADRIFGAKVGHPMKWETRESLLQPTPRSLVGL 344
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-22_002770.1 |
| Exons | 4 |
| Model size | 1008 |
| Cds size | 1008 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927346.0579166-CDS-C-linearis_contig10:2882749..2883040 | 1622927346.0579166-CDS-C-linearis_contig10:2882749..2883040 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2882750..2883040 - |
| 1690879641.5834749-CDS-C-linearis_contig10:2882749..2883040 | 1690879641.5834749-CDS-C-linearis_contig10:2882749..2883040 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2882750..2883040 - |
| 1622927346.073673-CDS-C-linearis_contig10:2883380..2883761 | 1622927346.073673-CDS-C-linearis_contig10:2883380..2883761 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2883381..2883761 - |
| 1690879641.6057935-CDS-C-linearis_contig10:2883380..2883761 | 1690879641.6057935-CDS-C-linearis_contig10:2883380..2883761 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2883381..2883761 - |
| 1622927346.086344-CDS-C-linearis_contig10:2883985..2884078 | 1622927346.086344-CDS-C-linearis_contig10:2883985..2884078 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2883986..2884078 - |
| 1690879641.6286666-CDS-C-linearis_contig10:2883985..2884078 | 1690879641.6286666-CDS-C-linearis_contig10:2883985..2884078 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2883986..2884078 - |
| 1622927346.0984454-CDS-C-linearis_contig10:2884239..2884482 | 1622927346.0984454-CDS-C-linearis_contig10:2884239..2884482 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2884240..2884482 - |
| 1690879641.6425266-CDS-C-linearis_contig10:2884239..2884482 | 1690879641.6425266-CDS-C-linearis_contig10:2884239..2884482 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2884240..2884482 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.613.1 >prot_C-linearis_contig10.613.1 ID=prot_C-linearis_contig10.613.1|Name=mRNA_C-linearis_contig10.613.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=336bp
MPLTTHGRRVVSNLRFDIEPLLTSRTTAVSSQSGFWNDVEAEKGGVHLDE
GLKICGPENSLPRALERVFGWLEEVEAGHQNSASRVDETIIDTGVLAALR
APSSSARQESDKVVSSKAVTKADFCLASRNQPSLAIGIYAHRVVCRPKWL
LWSFSHAEYLVVTGTETELLSAWRTYSDFSSLADTAKSLRVRRAVECWHR
LEALGYHRRTDPSSLRTAARLLNEFLATLLEGLPQEDIAVVADFARQPTT
YVVVGVEGVGLRTTTTSRSADAAGQESGERGEPSVSSPQQTAPRRRSSRS
SSPGGGGFGVAVRHPMKWQMIESSLTPAPRIWVGL* back to topmRNA from alignment at C-linearis_contig10:2882750..2884482- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.613.1 ID=mRNA_C-linearis_contig10.613.1|Name=mRNA_C-linearis_contig10.613.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1733bp|location=Sequence derived from alignment at C-linearis_contig10:2882750..2884482- (Chordaria linearis ClinC8C monoicous)
ATGCCTCTTACAACTCATGGCCGTCGTGTGGTTTCCAATCTCAGGTTTGA
CATTGAGCCACTCCTCACATCGCGCACTACTGCTGTGTCATCCCAATCTG
GGTTCTGGAACGATGTGGAAGCAGAGAAGGGTGGCGTTCATTTAGACGAA
GGGTTGAAAATATGTGGTCCAGAGAATTCATTGCCACGTGCTCTGGAACG
CGTTTTCGGCTGGCTCGAGGAGGTGGAAGCAGGCCATCAGAATGTGAGAC
ACCAGGAGCCGTGTGTGGTCCCTGACCTCGAATCTATCATACTCGTCGAC
CCAAATCCTATATTTACACCAGTATGAATCATCAGCAACACCCATCATGC
GCATCTGAAGCAACAATCAATCGCACTTTGCTCGTGCGCGCCAAGACAAA
CCAGAGCGCAAGCCGTGTGGACGAGACCATTATCGACACAGGCGTGTTGG
CAGCCTTGCGAGCACCCAGTTCCTCAGCCAGGCAAGAGAGCGATAAGGTG
AGAATACAACGCGTGTGCATTCAAACCTCGAACCCGTGTTCAACTACAAA
TTTCTGGTGTGACGTATGGCCGGTGAATGTTGGCAATAGACTACGGTATT
TGTATGTATGCGCTCTCTTTCCTGCGGACGTGCATGCCCATCACCTCTCC
TAGAATCATTTCCTGTCCTGCTTGAACCTGGCTTGAAGAGTCCACGGCCC
AACGTCCACCTTTCAACTCAGGTTGTTTCTTCCAAGGCCGTGACGAAAGC
CGACTTCTGCTTGGCATCGAGGAATCAACCGTCTCTCGCCATTGGGATTT
ACGCCCATCGGGTAGTCTGTCGTCCGAAATGGCTGCTTTGGTCTTTCTCC
CACGCAGAGTATCTTGTAGTCACCGGCACTGAAACGGAGCTGCTGAGTGC
CTGGCGGACCTACTCAGACTTCTCCTCTCTCGCCGACACCGCGAAAAGCT
TGCGTGTGCGTAGAGCGGTCGAGTGCTGGCACCGGCTGGAAGCGCTAGGT
TACCACCGGAGGACGGATCCCTCGAGCCTAAGAACGGCGGCGCGGTTGCT
CAACGAATTTTTGGCAACATTGCTGGAGGGCCTACCTCAAGAGGATATTG
CGGTGAGGTTCTAACCCTCTGGTGGTGCATCTGGATAATTTTTCCTCCTG
TGTGTTTGTTTCTTGCGAGTGGTCGCAACGTGATCTTCATCTCGTCCGAG
CTCGGGGGATGATCGCTCCCTGTCAGGTGTCCATCCGTCTCTCGACACCA
GAGCGAAACCACACATAAACTCTCCGAAAGAGACTCAATTCAGATTTTTT
CGAACATATATAGAAGCTGTCGCAAATAATACGTTTGTAGCGACACCCGG
CTTTCCCTTTCTAGTCTTTTTTCAGACACCGCCCTGCTCTGCAGGGCTCA
ACTGTGGTGTTCACCAGCCGTGCCGCCCCCATTCGCAAGCAGGTGGTTGC
TGACTTCGCTCGCCAGCCGACGACGTACGTCGTTGTGGGCGTTGAAGGCG
TTGGGCTCCGTACCACTACCACCAGCCGCTCGGCCGATGCCGCTGGTCAA
GAATCTGGAGAGCGTGGCGAACCATCAGTCTCAAGCCCACAACAAACTGC
TCCCCGAAGAAGATCAAGCAGAAGTAGCTCTCCCGGAGGCGGGGGATTTG
GAGTGGCAGTCAGACACCCGATGAAGTGGCAAATGATCGAGTCCTCACTT
ACGCCCGCTCCTCGAATATGGGTCGGCTTGTAA back to topCoding sequence (CDS) from alignment at C-linearis_contig10:2882750..2884482- >mRNA_C-linearis_contig10.613.1 ID=mRNA_C-linearis_contig10.613.1|Name=mRNA_C-linearis_contig10.613.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at C-linearis_contig10:2882750..2884482- (Chordaria linearis ClinC8C monoicous)
ATGCCTCTTACAACTCATGGCCGTCGTGTGGTTTCCAATCTCAGGTTTGA
CATTGAGCCACTCCTCACATCGCGCACTACTGCTGTGTCATCCCAATCTG
GGTTCTGGAACGATGTGGAAGCAGAGAAGGGTGGCGTTCATTTAGACGAA
GGGTTGAAAATATGTGGTCCAGAGAATTCATTGCCACGTGCTCTGGAACG
CGTTTTCGGCTGGCTCGAGGAGGTGGAAGCAGGCCATCAGAATATGCCTC
TTACAACTCATGGCCGTCGTGTGGTTTCCAATCTCAGGTTTGACATTGAG
CCACTCCTCACATCGCGCACTACTGCTGTGTCATCCCAATCTGGGTTCTG
GAACGATGTGGAAGCAGAGAAGGGTGGCGTTCATTTAGACGAAGGGTTGA
AAATATGTGGTCCAGAGAATTCATTGCCACGTGCTCTGGAACGCGTTTTC
GGCTGGCTCGAGGAGGTGGAAGCAGGCCATCAGAATAGCGCAAGCCGTGT
GGACGAGACCATTATCGACACAGGCGTGTTGGCAGCCTTGCGAGCACCCA
GTTCCTCAGCCAGGCAAGAGAGCGATAAGAGCGCAAGCCGTGTGGACGAG
ACCATTATCGACACAGGCGTGTTGGCAGCCTTGCGAGCACCCAGTTCCTC
AGCCAGGCAAGAGAGCGATAAGGTTGTTTCTTCCAAGGCCGTGACGAAAG
CCGACTTCTGCTTGGCATCGAGGAATCAACCGTCTCTCGCCATTGGGATT
TACGCCCATCGGGTAGTCTGTCGTCCGAAATGGCTGCTTTGGTCTTTCTC
CCACGCAGAGTATCTTGTAGTCACCGGCACTGAAACGGAGCTGCTGAGTG
CCTGGCGGACCTACTCAGACTTCTCCTCTCTCGCCGACACCGCGAAAAGC
TTGCGTGTGCGTAGAGCGGTCGAGTGCTGGCACCGGCTGGAAGCGCTAGG
TTACCACCGGAGGACGGATCCCTCGAGCCTAAGAACGGCGGCGCGGTTGC
TCAACGAATTTTTGGCAACATTGCTGGAGGGCCTACCTCAAGAGGATATT
GCGGTTGTTTCTTCCAAGGCCGTGACGAAAGCCGACTTCTGCTTGGCATC
GAGGAATCAACCGTCTCTCGCCATTGGGATTTACGCCCATCGGGTAGTCT
GTCGTCCGAAATGGCTGCTTTGGTCTTTCTCCCACGCAGAGTATCTTGTA
GTCACCGGCACTGAAACGGAGCTGCTGAGTGCCTGGCGGACCTACTCAGA
CTTCTCCTCTCTCGCCGACACCGCGAAAAGCTTGCGTGTGCGTAGAGCGG
TCGAGTGCTGGCACCGGCTGGAAGCGCTAGGTTACCACCGGAGGACGGAT
CCCTCGAGCCTAAGAACGGCGGCGCGGTTGCTCAACGAATTTTTGGCAAC
ATTGCTGGAGGGCCTACCTCAAGAGGATATTGCGGTGGTTGCTGACTTCG
CTCGCCAGCCGACGACGTACGTCGTTGTGGGCGTTGAAGGCGTTGGGCTC
CGTACCACTACCACCAGCCGCTCGGCCGATGCCGCTGGTCAAGAATCTGG
AGAGCGTGGCGAACCATCAGTCTCAAGCCCACAACAAACTGCTCCCCGAA
GAAGATCAAGCAGAAGTAGCTCTCCCGGAGGCGGGGGATTTGGAGTGGCA
GTCAGACACCCGATGAAGTGGCAAATGATCGAGTCCTCACTTACGCCCGC
TCCTCGAATATGGGTCGGCTTGTAAGTGGTTGCTGACTTCGCTCGCCAGC
CGACGACGTACGTCGTTGTGGGCGTTGAAGGCGTTGGGCTCCGTACCACT
ACCACCAGCCGCTCGGCCGATGCCGCTGGTCAAGAATCTGGAGAGCGTGG
CGAACCATCAGTCTCAAGCCCACAACAAACTGCTCCCCGAAGAAGATCAA
GCAGAAGTAGCTCTCCCGGAGGCGGGGGATTTGGAGTGGCAGTCAGACAC
CCGATGAAGTGGCAAATGATCGAGTCCTCACTTACGCCCGCTCCTCGAAT
ATGGGTCGGCTTGTAA back to top
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