mRNA_C-linearis_contig10.611.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.611.1
Unique NamemRNA_C-linearis_contig10.611.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.611.1 vs. uniprot
Match: D7G8Q9_ECTSI (Ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q9_ECTSI)

HSP 1 Score: 545 bits (1404), Expect = 1.700e-179
Identity = 508/691 (73.52%), Postives = 536/691 (77.57%), Query Frame = 1 
Query:   40 MASYIVTGIHAAARAGKYGKVQDFIAKGGDVNKPDRENCSPLMWACWGGHVEIVKRLIDEGAKPDAFSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGQSASQKNRGKSEDIKKLLKSKMPEDDDQGLDGSYHPESGGTLMGAAMSVAKNVASNTS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATNGDTPRTDR-------GESNGGVEVAPLEVSPSDQAKATAKSDAPAPARKSSFLLNIGGKQSPERGVSDKRSFGAGGPAAVDRRASAGGGPSSRGSSPANATSGGSGPIGGERARKKSTINLMMADGMVSIGDGKVGNEASPSNKRRGSNFGGNNAPSAPVAASRVKRSPQGSVAGESSTKGSERDDMEEVSNEEVAYEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKRSTIAKDFEAKQANPGGGLDRTIGSEAPLAATVVGTTEGSGADWAGNGIATNQFASKDELGELRQAMAMKDKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRMEDAARKVSSGAG-CNCTVM 2085
            MASYIVTG+HAAARAGK  KVQDFIAKGGDVNKPDRE+CSPLMWACWGGHVEIVKRL+DEGAKPD    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGQSASQKNRGKSEDI KLLK+KMPEDDDQGLDGSYHPES GTLMGAAMSVAKNVAS+TS +                                ATNG++PR DR       G+SNG V+ AP E     Q K  AKSDAPAPARKSS L  +GG  + +                             RG+SPA A SG  G  GG+RARKKSTINL MADGMVSIGDGK GNEASP+NKRRGS +G    P+AP  ASRVKRSPQGSV GESSTKGSERDDMEEVSNEEVAYEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKR+TIAKDFEAKQANP G LDRT+G+E PLA  + GTT  SGADW+GNGIA +QFASKDELGELRQA+AMKDKE                        XXXXXXXXXXX        SRMED ARKVS+ +G CNCT+M
Sbjct:    1 MASYIVTGVHAAARAGKLQKVQDFIAKGGDVNKPDREHCSPLMWACWGGHVEIVKRLLDEGAKPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGQSASQKNRGKSEDIIKLLKNKMPEDDDQGLDGSYHPESDGTLMGAAMSVAKNVASHTSTSSTTGEAAANTTPTAAADAVVDKAAVSTSGASKATNGESPRADRQETIPPSGDSNGLVDGAPPE-----QTKTAAKSDAPAPARKSSLLFGVGGGNAKQXXXXXXXXXXXXXXXXXXXX---------RGNSPAAAPSGAQGAGGGDRARKKSTINLTMADGMVSIGDGKPGNEASPTNKRRGSTYGMTTVPAAPAPASRVKRSPQGSVTGESSTKGSERDDMEEVSNEEVAYEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKRTTIAKDFEAKQANPDGALDRTLGNEPPLAPNLGGTTAASGADWSGNGIAADQFASKDELGELRQAVAMKDKELRDIRDRMQDKEGELDTLRKAGKNXXXXXXXXXXXTRGIMDRLSRMEDTARKVSAASGGCNCTIM 677
[Close]
BLAST of mRNA_C-linearis_contig10.611.1 vs. uniprot
Match: A0A812UNP7_SYMPI (ANK2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812UNP7_SYMPI)

HSP 1 Score: 59.3 bits (142), Expect = 4.710e-5
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   73 AARAGKYGKVQDFIAKGGDVNKPDRENCSPLMWACWGGHVEIVKRLIDEGAKPDA 237
            AAR GK G VQ  +  G + +  D +  +PL+ ACW GHV +V+ L+D GAKP A
Sbjct: 2734 AARLGKTGVVQALLEDGAEKDVEDHDGVTPLLKACWSGHVHVVRLLLDAGAKPAA 2788
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Q9_ECTSI1.700e-17973.52Ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A812UNP7_SYMPI4.710e-547.27ANK2 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2868972..2878073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score554.3
Seed ortholog evalue8e-155
Seed eggNOG ortholog2880.D7G8Q9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-22_002660.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons12
Model size2870
Cds size2049
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.611.1prot_C-linearis_contig10.611.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2869754..2878034 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927345.8891382-UTR-C-linearis_contig10:2868971..28697531622927345.8891382-UTR-C-linearis_contig10:2868971..2869753Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2868972..2869753 -
1690879641.4242308-UTR-C-linearis_contig10:2868971..28697531690879641.4242308-UTR-C-linearis_contig10:2868971..2869753Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2868972..2869753 -
1622927346.0181382-UTR-C-linearis_contig10:2878034..28780731622927346.0181382-UTR-C-linearis_contig10:2878034..2878073Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2878035..2878073 -
1690879641.5734084-UTR-C-linearis_contig10:2878034..28780731690879641.5734084-UTR-C-linearis_contig10:2878034..2878073Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2878035..2878073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927345.8984492-CDS-C-linearis_contig10:2869753..28698221622927345.8984492-CDS-C-linearis_contig10:2869753..2869822Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2869754..2869822 -
1690879641.4397328-CDS-C-linearis_contig10:2869753..28698221690879641.4397328-CDS-C-linearis_contig10:2869753..2869822Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2869754..2869822 -
1622927345.9076564-CDS-C-linearis_contig10:2870000..28701351622927345.9076564-CDS-C-linearis_contig10:2870000..2870135Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2870001..2870135 -
1690879641.4565823-CDS-C-linearis_contig10:2870000..28701351690879641.4565823-CDS-C-linearis_contig10:2870000..2870135Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2870001..2870135 -
1622927345.9163544-CDS-C-linearis_contig10:2870303..28705191622927345.9163544-CDS-C-linearis_contig10:2870303..2870519Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2870304..2870519 -
1690879641.4672554-CDS-C-linearis_contig10:2870303..28705191690879641.4672554-CDS-C-linearis_contig10:2870303..2870519Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2870304..2870519 -
1622927345.9255066-CDS-C-linearis_contig10:2870852..28710041622927345.9255066-CDS-C-linearis_contig10:2870852..2871004Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2870853..2871004 -
1690879641.479601-CDS-C-linearis_contig10:2870852..28710041690879641.479601-CDS-C-linearis_contig10:2870852..2871004Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2870853..2871004 -
1622927345.9397368-CDS-C-linearis_contig10:2871350..28715811622927345.9397368-CDS-C-linearis_contig10:2871350..2871581Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2871351..2871581 -
1690879641.4931312-CDS-C-linearis_contig10:2871350..28715811690879641.4931312-CDS-C-linearis_contig10:2871350..2871581Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2871351..2871581 -
1622927345.9489818-CDS-C-linearis_contig10:2872424..28729521622927345.9489818-CDS-C-linearis_contig10:2872424..2872952Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2872425..2872952 -
1690879641.5033412-CDS-C-linearis_contig10:2872424..28729521690879641.5033412-CDS-C-linearis_contig10:2872424..2872952Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2872425..2872952 -
1622927345.9609272-CDS-C-linearis_contig10:2873234..28733971622927345.9609272-CDS-C-linearis_contig10:2873234..2873397Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2873235..2873397 -
1690879641.5184627-CDS-C-linearis_contig10:2873234..28733971690879641.5184627-CDS-C-linearis_contig10:2873234..2873397Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2873235..2873397 -
1622927345.9702737-CDS-C-linearis_contig10:2873564..28736901622927345.9702737-CDS-C-linearis_contig10:2873564..2873690Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2873565..2873690 -
1690879641.5276716-CDS-C-linearis_contig10:2873564..28736901690879641.5276716-CDS-C-linearis_contig10:2873564..2873690Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2873565..2873690 -
1622927345.979812-CDS-C-linearis_contig10:2873948..28740951622927345.979812-CDS-C-linearis_contig10:2873948..2874095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2873949..2874095 -
1690879641.5362399-CDS-C-linearis_contig10:2873948..28740951690879641.5362399-CDS-C-linearis_contig10:2873948..2874095Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2873949..2874095 -
1622927345.9902425-CDS-C-linearis_contig10:2874270..28743641622927345.9902425-CDS-C-linearis_contig10:2874270..2874364Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2874271..2874364 -
1690879641.5441625-CDS-C-linearis_contig10:2874270..28743641690879641.5441625-CDS-C-linearis_contig10:2874270..2874364Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2874271..2874364 -
1622927346.0011783-CDS-C-linearis_contig10:2874783..28749111622927346.0011783-CDS-C-linearis_contig10:2874783..2874911Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2874784..2874911 -
1690879641.552812-CDS-C-linearis_contig10:2874783..28749111690879641.552812-CDS-C-linearis_contig10:2874783..2874911Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2874784..2874911 -
1622927346.0091653-CDS-C-linearis_contig10:2877974..28780341622927346.0091653-CDS-C-linearis_contig10:2877974..2878034Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2877975..2878034 -
1690879641.5635285-CDS-C-linearis_contig10:2877974..28780341690879641.5635285-CDS-C-linearis_contig10:2877974..2878034Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2877975..2878034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.611.1

>prot_C-linearis_contig10.611.1 ID=prot_C-linearis_contig10.611.1|Name=mRNA_C-linearis_contig10.611.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=683bp
MASYIVTGIHAAARAGKYGKVQDFIAKGGDVNKPDRENCSPLMWACWGGH
VEIVKRLIDEGAKPDAFSHQHASALHWATWGGHTEIVRLLLEHKVLLDES
DEQDGTPLHYAAKKGFVGLAKVLVGAGATVDVRNAKNMAPLHLACHYNKV
EVARFLILKHAGVGTTDHINRTPLHYACLKSHINSVRVLLEWGAEVMVID
NKGKLPLHLVGQSASQKNRGKSEDIKKLLKSKMPEDDDQGLDGSYHPESG
GTLMGAAMSVAKNVASNTSAMSAAGGEAAKTTLASSAADTVDATTTANGA
AKATNGDTPRTDRGESNGGVEVAPLEVSPSDQAKATAKSDAPAPARKSSF
LLNIGGKQSPERGVSDKRSFGAGGPAAVDRRASAGGGPSSRGSSPANATS
GGSGPIGGERARKKSTINLMMADGMVSIGDGKVGNEASPSNKRRGSNFGG
NNAPSAPVAASRVKRSPQGSVAGESSTKGSERDDMEEVSNEEVAYEMALE
QIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKRSTIA
KDFEAKQANPGGGLDRTIGSEAPLAATVVGTTEGSGADWAGNGIATNQFA
SKDELGELRQAMAMKDKELRDLRDRMQDKEGELDTLRKAGKNLRERLDEK
EVETRGIMDRLSRMEDAARKVSSGAGCNCTVM*
back to top

mRNA from alignment at C-linearis_contig10:2868972..2878073-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.611.1 ID=mRNA_C-linearis_contig10.611.1|Name=mRNA_C-linearis_contig10.611.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9102bp|location=Sequence derived from alignment at C-linearis_contig10:2868972..2878073- (Chordaria linearis ClinC8C monoicous)
ACTCATTCTCTGCCCGTGAGGAGGATCGGAGGAGGGAGGATGGCGTCGTA
CATAGTAACTGGGATACACGCTGCCGCCAGGGCTGGGAAATACGGGAAGG
TGAGAGAATCGTGGCATGGCACGTGTGCAAGTTGCCGTCCTATCCTGTTG
ACAATTCTTGGTCTTTTCGGTCACCTACTTTTTAGTCGGCGGTGTCCCTC
TGTTTTTAATCGCCGCATGCTGTGCTGGTAGCTGGCAGGCTTCTCTTGCG
TGGGACGTGGTGGCCGGCCTGTGAATGATGGAGATGTTTCTCTCGTCGTC
AACTCAGTAGCAAAGCTTCTCTTTTTGTCTCTCACACACGCCTGTTTGCG
TTTGACGAACAGCATCCAAGTGAGCAAGAAGACGACGCTCCTCTCCTCAT
TTTTTGCCGGCTGCCGTCAAACTAGTCAAAGCCCTGTTTGTTGCGCCGGG
TACGAAAGCACCAACACACATACATACCCTTGTGCATCGCCTCTGCTTCG
GGTGCCCAAGCGATGATGCGGGGTCCGCTTTCTCTCTCTCTCGGTTTCTC
TGTCCTATCTTGGTGGTTTTACGTTGTTGTTGTTTGCTCACGAGCATCTC
AAAATTCGAATCGAATTTTTTCCCACGTCTCACTCCTGCGCTCCTGCGGC
AATCCCATGGAAGCACGAACTACTACTACTTCGTGTGCGTGTGTTGCGCG
TGTCCACAGCGCCATTTGAGCTGATCCACGAGCCGGCGCTGGGGTCATTC
TTGTTGTCCACATTTGCATGATTGTGGCGTTGTTCCCAAACGTTTTGTGA
GAGCAAAGGGCAGACACACCGACACGTTTGAAAGACCGCCTTGCCACAAC
CCGCTACCGCGAAGAACCCACGTGCCTGACTGAGGGTACGCGGTACGCGG
CTGGCCAATCTGGCCTGTGATGTGCGCACTTCGTGATGAACGATTGCAAC
CACTGCATAGGATTTTAATTGAGTACGTTAAAGAGAGGCAGCCTCCGATA
CCTCCTCCCTCCTCCGAACCTCCTCATAGTTGTGGCGGAAAATCGTTCGT
TACACATCTGAAAAGAAGACGCACTGCTTTATGTTAGGCGGCGGACGAGC
GGTGGACGGTCACCGAACGCTCAGGGGTATTAGTCGGCTCTGAAATTGTT
TTTTTCGTGAGGAGATGCGTACCTCGTGGGCTGTGGCTCCATTGCTCAGG
CACACGCTTGCGTCGGAGGCTCTGTCACTCCACGTGGTGGTGATGCATCT
CAACTTGACGGGCTGATAAAATTGTTTGACCCAAGGTTCGTGAGCGGAGC
ACGACGTTCGGCGGAAGTATCCTTACACTTTTGCACGGGATAAAGAAAGA
CCAACGGCCTATTCCGAACCATTTCACACTTGTGATAGACCCCCGTTAAA
AATTAAATATGAAGTTTCTGTGGAGGACATTCCCTGGACAATGACGACAC
GTGCCAGAGGCACAAGTGCCAGCCAAGAGGTCATGAACTCCACAAGTCCA
GAGGATAAATTTCTGTAGTTCCAGCTTCGGGGAGCATTTTTTTTTTAATA
TATATATATTTTTATCATCACATATAAGCCGGTCGCCCAGGTCACGAGTT
CGAATCCCGGCGTATGCGATCTTTTCTCACAATAAAAACCGTGAGTTTTT
CTCTCAAATGCGTCCCTGGTTGTGGAAAGCGCTAGTCGTGTGTACACAGC
AGAGGGAAGAGATTGCCGCGCTCTTCTCGCATTAAAAATCAAAGGCGAAG
CACCGCAGGAGGGGAGGGTGGGGGGCTTCCGGGAGAGGAACCCTTCTGTG
TGACCACGGGCTAGAGCTCCTATCCGGCAACATGCTCATTGCCGCGCTCT
TCTCGCATTAAAAATCAAAGGCAGATAGGAGCTCTAGCCCGTGGTCACAC
GGAAGGGTTCCTCTCCCTCAGGCCCCCCCCCACCCCCCCCTCCTGCGGTG
CTTCGCCTTTGATTTTTATTGCGAGAAGAGCGCGGCAATCTCTTCCCTCT
GTGTGTGTGTGTGTTTTCGTCCCATTTATTTTGGCGACAGTCCCTTTCCG
ATCAAGGCGAGACGTGTACTACACGTTGCGGTGTATTTAGAGTACTACAC
TTGTTCAGTGTATTTTTCTGTACAACTAGAACCAACCGGGGTCACACAGG
AGGGGGTAAACACTGGGGCTTTTTTCTTTTTTTTCTGTTTCTTTTTTTTG
CCCCACCTTCGTCCTGCGGTGCTTGCCTTGGATTTTATCGCGAGAAGGGT
GCAGCCATACACACGACTAATAGCGCTTTCCACAACCAGGGACGTATTTG
AGAGAAAAACTCACGGTTTTTATTGTGAGAATATTGTGAGAAAAGATCGC
ATACGTCGGGATTCAAACCCGTGACCTGGGCGCTAGAAGGTGTGCGGTTT
ACCAACTAGACCACCGGGACGACCGGCATGAAGAGGATGTAAACTGAAAT
ACCGCCCATAAATCGGCACAGACCGAGTGTTTTTTGTGCTGGCAAGATAA
TAAGGGGCGTGAGAGTGTCATGGAAGGCCGCGGATGATCTCAAGAGTTCG
ATGTGTACAAAGGAGTTCGAGAGTATTGGATTAAAGACCCCAAAATATTT
GATGGAAACCCACAACCTTCATCAGACAGCTGATCGAGAGTCTTGGACTC
TCAGAACGTCCCCAAATATTTAAATATTTATTCAACCTCAACCTCCCCTG
CTAGCGGGGAAAGCAGCCGCACGATGGTCGGTTCTCGGGAGAATCAATAG
TCGTGAAACAGCAGTTATCACGCGCAGTTACTCTAGCTTTGGGATAGCAA
GCCCGCAGTCGCGCCGTGTCCATTCCTAACTGAAAGCAACTATTTTCTCC
TCTATAAGAATGTTCATGCCTGGTCCGTTATTCGTAAAGACTGATAGAGG
CTATTTGTCGGGGATTCTGCGTCAGGGTATGTTGTAAATCAGGCAAACCA
TGCCACCCGAGGCAGCCTTGCTGAATCTCACTTAAATACGTACCATACTC
TATATTACAGCAATAACATTGCGTGGAAACTCAACGTTGATTGCGTGGGC
TCTACTTGGGTTCGCATCCACCACCTGTTGCGCGATTTGTTACAACCCGG
TACAAGACCCTCAACTTGATCATGTTGCTGGCAAAAAATCGCTCTTACCC
TGTGGGTGGCAGGTGCAAGACTTCATCGCCAAGGGTGGCGATGTGAACAA
ACCGGATCGAGAGAATTGCAGCCCTCTCATGTGGGCTTGCTGGGGGGGGC
ATGTGGAGATCGTCAAAAGACTAATTGACGAAGGAGCCAAGTGAGCCCCT
GTTGTGTAACACACGAGGTTTTTGGCGTTGCTTGCCCGCTGTCCCTCGAT
AAAGCACTTGTACAAATATTGATAGATAGTGCCACAAGCCCTTGTTCGAA
GGCTACCGCCGGCACTTTTCCTAGAGCTGCGGGCTTACAGTGAACCTCAA
ATTATCCCACAGCTACGTGCCAGATAGTGTTTGGTACCTGTTGTGGCACC
CTATTGTAGTACGTTTCTTGAAGCAACTACTCTGTAAGTACACGTCCTGT
GCTACTGTAAGCACACGTCGTGCTTTGACAACAATTCAATGGCTTACGTG
GAGATGGCTGGAGCTGGACGAAGTGTGCAGCACACACCTCCGAATTTTAC
TTCGCACTGAACTAATCGATGGTATGAAATTTAACCTCCGCCCTGTCATG
CTTGAACAGGCCTGATGCATTCAGCCACCAGCACGCAAGCGCCTTGCATT
GGGCGACGTGGGGGGGGCACACTGAGATCGTCAGGCTTCTTTTGGAGCAT
AAGGTGAGCGTTCCCACCGAAGCTTGCAGCGCGCTTGGAAATGAATACCT
CTTTAGAGTGTCGTCGTACTTACTCGTCTACCCTGCCTGCTGCCTGCCGT
ACTGCTGTATGCCACTTTTTCTTAGTCACTACCATACCTACTGATCCGGG
CCACGACTTACCTTCCTTGCTCTTGCAGGTGTTGCTTGATGAGAGCGACG
AGCAGGACGGCACTCCTCTGCATTACGCAGCGAAAAAGGGCTTCGTGGGT
CTGGCTAAAGTGCTAGTGGGCGCGGGAGCTACGGTTGATGTTCGCAACGC
CAAGAACATGGCCCCTCTACACTTGGTGCGTAAGGGCGGCCTCGGAGACA
ACCACTGCCCGACATAACCTGTTGCATGCACAGCACATAATTTATGTTTG
TCTCGTCGATGTGTAGAACCTTGTTTGTGCGGAGCTGTCTTCTTCCTTTC
GTCAACCTCTCCTCTGTGTCGAAGAACACTCGATACGCGGCCTGCTCGAA
TAAACGCGTCAGAAAAATTTAGGTGTGTCCGTGCGATGTCCTGGCGTTTG
ATTTTTTACCACACGCCGTACGGGCGGGTGCAGGCATGCCACTACAACAA
GGTGGAAGTGGCGCGCTTCCTCATCCTCAAACACGCCGGGGTCGGAACCA
CCGACCACATCAACCGAACGCCACTTCATTACGCCTGTCTCAAGTCCCAC
ATCAACTCGGTAAGAATGCATGCGCCCTCTGTCTGATGAAATAACTAGTT
TGCTTTGAATGACGGGCGATTGGCCGTAGAAGCTTGGCTTTGTTGTTGAC
GGTGCTCTGTGGGCACCTTGTCTTGCTTTGTTCGCGAGTCTGAACGTGTG
ATCGAAAACCTTTATTTCTATCTAAGGTGCGCGTCCTGCTGGAGTGGGGG
GCAGAGGTGATGGTGATCGACAACAAGGGAAAACTTCCCCTGCACCTTGT
GGGGCAGAGTGCCTCCCAGAAGAACCGAGGGAAAAGCGAGGACATCAAGA
AGTTGCTCAAGAGCAAGATGCCTGAGGACGACGACCAAGGTAAGACCCAT
GATGTCATCTCATCCAAAACAGCCACTTTCCGCGAAGGCACCGACGGCCA
TACCATCGCCACGGTCAACTACAAGTATAAGGCGTTTTTTCTTTTTCGTG
TTTTTCGTCGTTTTTTCCGCTTTTCGTTCTTTTTCCTCTGGCATGTCTGC
CCCGTTGGCGGGTGTTTCAGAACCGGGGTCGGCTCGCGTCTTGCTGTCGT
TTCAAATTCGAACTCGTTGCCCCTGTTCCTCCTTGTTTGTGCCCCCCACC
CTACCCCCCTACCCCCCCTAGGGCTGGACGGGTCGTACCACCCCGAGTCT
GGCGGCACTCTTATGGGAGCGGCGATGTCTGTGGCTAAGAACGTTGCAAG
CAACACGTCTGCCATGTCTGCTGCCGGGGGCGAGGCAGCTAAGACCACAC
TGGCCTCTTCGGCCGCCGACACCGTTGACGCCACCACGACGGCAAATGGC
GCCGCCAAGGCAACCAACGGGGATACGCCGAGAACCGACCGAGGCGAATC
GAACGGCGGCGTGGAGGTAGCACCGCTGGAGGTATCGCCATCGGACCAAG
CGAAGGCAACGGCCAAGTCGGACGCGCCCGCCCCCGCACGGAAGAGCTCT
TTCCTTCTTAACATCGGGGGCAAGCAATCCCCCGAGCGAGGTGTGTCTGA
CAAGCGGTCTTTCGGAGCAGGAGGGCCGGCTGCCGTTGATCGGAGAGCGT
CAGCCGGTGGAGGGCCGAGCTCGAGAGGGAGTTCGCCGGCAAATGCGACT
AGCGGGGGGTCTGGACCGATCGGAGGGGAGCGCGCCCGAAAGAAGTCGAG
TGAGTGACAGAGTTCGCGTGATGTATCTGGAAAGAAGGGAACCGCGGCAC
GTGCCCCTGTGTGTGCTGTCCCTCTTGGTGATGTGCGGCTCTACGATGTC
GACCCCTCTTGCTCTTAGATGTATTTTTGGTGTCCAAAGCTTTTACCTCG
GTTCATTCGGCAGGACCACGTTGATGGAAAGAAATGGCGCTCCTCCATGC
GCCGAACTCGTGAGTAAAATTAAGATGCGGTGCCAATGGAGCAAGACAAC
GACAAAACCAGGCGTCTGCGGCCAATCGCCCGTCATTCGAAGCAAACCAC
TTATTTCACGAACAGAGGGCACATGCGTTCTTACCGAGTTGATGTGGTCG
GTGCTTGTAGTGACATGCCTGCACCGGCCCGTGTGACGCGCGGGAAATAC
CCAAACGTTTTGACATCGCACGAATACAACAGCACTTGTTCGTACCGAGT
GTTCTTCGACACTGCTAGAAAGATTGGCAAAATGGAAGAGGGTATTCCAA
ACAAAGTTAAAAAATCATACAGGTTGTACCAAAGAGGAATACTAATCATT
AATTGTGTACGGCAGGGCCAAACCATTACGTTGTATGAATGACGAAACCG
CAACTGGGTTGTTCATGTGGTATGTTTGGTCGCACAGCAGTGCTTGTGTC
TTCTTCTCTTTTTTTCAGCTGGAGATTTATGTTAGGCTATTCCCGCGGAA
GGTTAAGTCTTTCCACTGGTCGGGAGCTCCTTGTTTGCCTTTCGTTCCCG
TCGGCAGCCACTTTCCTGCCACACTAACCCAATATTTCCGCTTCATTCCT
GCCACATTTTCAACGGATTTCCCCCCTGACTTGCTGGCGCAGCCATCAAC
CTCATGATGGCAGACGGGATGGTGAGTATTGGCGATGGGAAAGTGGGGAA
CGAAGCATCGCCCAGCAACAAGCGTCGCGGAAGCAACTTTGGGGGTAACA
ACGCGCCTTCGGCACCAGTCGCTGCTAGCCGCGTGAAGCGCTCACCTCAG
GGTTCGGTTGCCGGGGAGTCTTCCACCAAAGGAAGCGAACGCGACGACAT
GGAAGAAGTCAGCAACGAAGAAGGTCGGCGACACCGATTTGCGTAGTGTA
GTGTATTGTAGTGCGGGCATTCTTCACCGCGCCTGTTTTCCTCAACCTTA
GTCTGCATACTTCGCACGTTTTTCTTGTCCTTGACGTTGCACAGTAGTTC
AACTACATACTTCGAAGTATCAGTCCCGTACTGGTGTGCCGCTGTACTGA
GTGTCGTCCACTGTTCCATTCCTCGAGATGCCCAAGAATACTGTATATGT
CAACTTATGTTGACGTCCCGACGTCGGTTTTTCAAGTGGCCGACCCTATA
CTTCGAAGTATCTGGTCTTTGGTGTTGAGCTAAAGCAAACCTTGCAACTC
TTCGATATCGATGCTACAGTCGCGTACGAGATGGCATTGGAGCAGATCAT
TGCGGACCTTGACGACCTGGAGGAACGCGTGGAGAATCTCAACGTGGACC
AGAAAACCAATGAGGACATTCTTCTCAACGTGTTGAAGAGGGTCGACGAG
ACGGAGAAAGACCTCAGAAAGGTGTGAGGCGTTTCCATGCGGTCATTTGG
GGTGCCTTGCCCCATGGTAGCCTCGGCCTCGGTTGTGTTCTTCGCCACGG
TTGTAAGAGGCGCCAATAATTGTAATTTATTAAATTTGGACACAGGAGCT
TTTTGGCTCTGGCGGTGTCTAGACCGCCCCAAATATTACTGTTCACATGA
CAGGTTGGGATGTACGGTAGCTGAAAAGCTTTTGTGGATGAGTTTACTTC
AAACACAGCGGGCGACGGTTCGAGACTAGAGAGCGATCCAAGCTTCTGCT
GGTGTTCGGTGATGCATTGATGGCCTGCCTGCCTGCCTGCCTGCCGATTA
CTAGATGAAACGTTCGACGATCGCCAAAGATTTTGAGGCGAAACAAGCCA
ATCCGGGCGGGGGGCTTGACCGCACGATAGGCAGCGAGGCACCGCTGGCT
GCAACTGTTGTTGGAACCACGGAGGGTTCCGGCGCTGACTGGGCGGGTAA
TGGCATCGCCACTAACCAGTTTGCGAGTAAGGACGAGCTGGGGGAGCTGA
GGCAAGCAATGGCGATGAAGGTCAGTGAGATTTACGTATGTAAACCTGGA
GTTATTTTGTGTTGCCCGTATGCCGCATGCCGCACAGGGCGTTTTCTTCG
TGACACTCCAAGCATTGGACGTGCGAGCCCACAATATAGTGCCTGATCGC
GACGTTTTGTTAACTCGTGGTGTTGTGGAATCCGGCAGGACAAGGAGTTA
CGGGATCTTCGAGACCGGATGCAGGACAAAGAAGGAGAGTTGGACACTCT
GCGGAAAGCGGGAAAGAACCTGCGGGAACGGCTTGACGAGAAGGAGGTGG
AAACCCGAGGCATAATGGATCGGGTAAGCCTCGTTCAAGTCAAATGATGA
TGATATACATTTGGTCCCGTTGCCGATTGGGTCTCACTCCCCGCCCGTAC
CTAGCTACGCGTTGTATGATATTCCTCGTATTGTGTAACGGACGCGGCTA
TTCTCTCCTTTCCCGTCCCCGCGCCGCCCGCCTTTGCTGCCGTGCTCACA
GCTTTCCCGCATGGAGGACGCAGCCCGAAAGGTTTCTTCGGGTGCGGGAT
GTAATTGTACTGTGATGTGATGTCCCCGTCGCACTTTTAGCGAAGATAGC
CGGCTGCCACGGAAACGCCGGCGCCGGTTATTCCTTGCCGTCTTCGCTTG
TACTGGGGGCTGTACGTACAGCATACGTGTTTTTTACGCCGTCTCTTTTT
GAGACGGGATACAAAACTTTAACGAGCAAGATAGCAGGTTGCGTTCGCGC
ACGGAAAATATTCAGGAGAACCCTGTTCGTGCAGTATAATTAGTTGAAAG
ACGCCTTAGAGAAGGCGTTCCTCGGGAGCGAGTACATTATTCGTGTTGGA
TATTACTGTACAAAAAGGGGATCGGTCCGCCCTTCGTAGTATTGTAACCC
TAACCTTGCCGGATGCAGACTGGTATTGTCTCTGGAAGTCTTGGGTGATT
CGAGAGCGCGATATTTTTTCTCTTTCGTAGCCAACTCTCGCGTGGTGCAT
CCCATCGTGGTGCGCTGGCTTTGCTCGGGTTTTGGGCACTTTTTTTCATT
GTGCTGTTGTAGCAGGTGGCAGATGTTTCGTCGAACGCCGATGGTCCGTT
GATTGTTGAAGACGCATATTAAATTCCACGCCCCCTACCGTCGTATACGT
ACGTAGCATGTTGTGTATGTTGTGTACACCTTGCAGCCAAGTCAACCGGT
GAACTATTGAGCTGCGCACCGGGAACGTGTCCCCTCTCGCTCTCCCGCAA
GTGCCTCCCAGCTGCGGGTGTGCGAGGACTAAAAAGTAAAGGCCAAAAGC
AAGTGCGGCCACAACCTTCCACTTGTGAATGTTCAGAAAATAATTTCTTT
AC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:2868972..2878073-

>mRNA_C-linearis_contig10.611.1 ID=mRNA_C-linearis_contig10.611.1|Name=mRNA_C-linearis_contig10.611.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4098bp|location=Sequence derived from alignment at C-linearis_contig10:2868972..2878073- (Chordaria linearis ClinC8C monoicous)
ATGGCGTCGTACATAGTAACTGGGATACACGCTGCCGCCAGGGCTGGGAA
ATACGGGAAGATGGCGTCGTACATAGTAACTGGGATACACGCTGCCGCCA
GGGCTGGGAAATACGGGAAGGTGCAAGACTTCATCGCCAAGGGTGGCGAT
GTGAACAAACCGGATCGAGAGAATTGCAGCCCTCTCATGTGGGCTTGCTG
GGGGGGGCATGTGGAGATCGTCAAAAGACTAATTGACGAAGGAGCCAAGT
GCAAGACTTCATCGCCAAGGGTGGCGATGTGAACAAACCGGATCGAGAGA
ATTGCAGCCCTCTCATGTGGGCTTGCTGGGGGGGGCATGTGGAGATCGTC
AAAAGACTAATTGACGAAGGAGCCAAGCCTGATGCATTCAGCCACCAGCA
CGCAAGCGCCTTGCATTGGGCGACGTGGGGGGGGCACACTGAGATCGTCA
GGCTTCTTTTGGAGCATAAGGCCTGATGCATTCAGCCACCAGCACGCAAG
CGCCTTGCATTGGGCGACGTGGGGGGGGCACACTGAGATCGTCAGGCTTC
TTTTGGAGCATAAGGTGTTGCTTGATGAGAGCGACGAGCAGGACGGCACT
CCTCTGCATTACGCAGCGAAAAAGGGCTTCGTGGGTCTGGCTAAAGTGCT
AGTGGGCGCGGGAGCTACGGTTGATGTTCGCAACGCCAAGAACATGGCCC
CTCTACACTTGGTGTTGCTTGATGAGAGCGACGAGCAGGACGGCACTCCT
CTGCATTACGCAGCGAAAAAGGGCTTCGTGGGTCTGGCTAAAGTGCTAGT
GGGCGCGGGAGCTACGGTTGATGTTCGCAACGCCAAGAACATGGCCCCTC
TACACTTGGCATGCCACTACAACAAGGTGGAAGTGGCGCGCTTCCTCATC
CTCAAACACGCCGGGGTCGGAACCACCGACCACATCAACCGAACGCCACT
TCATTACGCCTGTCTCAAGTCCCACATCAACTCGGCATGCCACTACAACA
AGGTGGAAGTGGCGCGCTTCCTCATCCTCAAACACGCCGGGGTCGGAACC
ACCGACCACATCAACCGAACGCCACTTCATTACGCCTGTCTCAAGTCCCA
CATCAACTCGGTGCGCGTCCTGCTGGAGTGGGGGGCAGAGGTGATGGTGA
TCGACAACAAGGGAAAACTTCCCCTGCACCTTGTGGGGCAGAGTGCCTCC
CAGAAGAACCGAGGGAAAAGCGAGGACATCAAGAAGTTGCTCAAGAGCAA
GATGCCTGAGGACGACGACCAAGGTGCGCGTCCTGCTGGAGTGGGGGGCA
GAGGTGATGGTGATCGACAACAAGGGAAAACTTCCCCTGCACCTTGTGGG
GCAGAGTGCCTCCCAGAAGAACCGAGGGAAAAGCGAGGACATCAAGAAGT
TGCTCAAGAGCAAGATGCCTGAGGACGACGACCAAGGGCTGGACGGGTCG
TACCACCCCGAGTCTGGCGGCACTCTTATGGGAGCGGCGATGTCTGTGGC
TAAGAACGTTGCAAGCAACACGTCTGCCATGTCTGCTGCCGGGGGCGAGG
CAGCTAAGACCACACTGGCCTCTTCGGCCGCCGACACCGTTGACGCCACC
ACGACGGCAAATGGCGCCGCCAAGGCAACCAACGGGGATACGCCGAGAAC
CGACCGAGGCGAATCGAACGGCGGCGTGGAGGTAGCACCGCTGGAGGTAT
CGCCATCGGACCAAGCGAAGGCAACGGCCAAGTCGGACGCGCCCGCCCCC
GCACGGAAGAGCTCTTTCCTTCTTAACATCGGGGGCAAGCAATCCCCCGA
GCGAGGTGTGTCTGACAAGCGGTCTTTCGGAGCAGGAGGGCCGGCTGCCG
TTGATCGGAGAGCGTCAGCCGGTGGAGGGCCGAGCTCGAGAGGGAGTTCG
CCGGCAAATGCGACTAGCGGGGGGTCTGGACCGATCGGAGGGGAGCGCGC
CCGAAAGAAGTCGAGGCTGGACGGGTCGTACCACCCCGAGTCTGGCGGCA
CTCTTATGGGAGCGGCGATGTCTGTGGCTAAGAACGTTGCAAGCAACACG
TCTGCCATGTCTGCTGCCGGGGGCGAGGCAGCTAAGACCACACTGGCCTC
TTCGGCCGCCGACACCGTTGACGCCACCACGACGGCAAATGGCGCCGCCA
AGGCAACCAACGGGGATACGCCGAGAACCGACCGAGGCGAATCGAACGGC
GGCGTGGAGGTAGCACCGCTGGAGGTATCGCCATCGGACCAAGCGAAGGC
AACGGCCAAGTCGGACGCGCCCGCCCCCGCACGGAAGAGCTCTTTCCTTC
TTAACATCGGGGGCAAGCAATCCCCCGAGCGAGGTGTGTCTGACAAGCGG
TCTTTCGGAGCAGGAGGGCCGGCTGCCGTTGATCGGAGAGCGTCAGCCGG
TGGAGGGCCGAGCTCGAGAGGGAGTTCGCCGGCAAATGCGACTAGCGGGG
GGTCTGGACCGATCGGAGGGGAGCGCGCCCGAAAGAAGTCGACCATCAAC
CTCATGATGGCAGACGGGATGGTGAGTATTGGCGATGGGAAAGTGGGGAA
CGAAGCATCGCCCAGCAACAAGCGTCGCGGAAGCAACTTTGGGGGTAACA
ACGCGCCTTCGGCACCAGTCGCTGCTAGCCGCGTGAAGCGCTCACCTCAG
GGTTCGGTTGCCGGGGAGTCTTCCACCAAAGGAAGCGAACGCGACGACAT
GGAAGAAGTCAGCAACGAAGAAGCCATCAACCTCATGATGGCAGACGGGA
TGGTGAGTATTGGCGATGGGAAAGTGGGGAACGAAGCATCGCCCAGCAAC
AAGCGTCGCGGAAGCAACTTTGGGGGTAACAACGCGCCTTCGGCACCAGT
CGCTGCTAGCCGCGTGAAGCGCTCACCTCAGGGTTCGGTTGCCGGGGAGT
CTTCCACCAAAGGAAGCGAACGCGACGACATGGAAGAAGTCAGCAACGAA
GAAGTCGCGTACGAGATGGCATTGGAGCAGATCATTGCGGACCTTGACGA
CCTGGAGGAACGCGTGGAGAATCTCAACGTGGACCAGAAAACCAATGAGG
ACATTCTTCTCAACGTGTTGAAGAGGGTCGACGAGACGGAGAAAGACCTC
AGAAAGTCGCGTACGAGATGGCATTGGAGCAGATCATTGCGGACCTTGAC
GACCTGGAGGAACGCGTGGAGAATCTCAACGTGGACCAGAAAACCAATGA
GGACATTCTTCTCAACGTGTTGAAGAGGGTCGACGAGACGGAGAAAGACC
TCAGAAAGATGAAACGTTCGACGATCGCCAAAGATTTTGAGGCGAAACAA
GCCAATCCGGGCGGGGGGCTTGACCGCACGATAGGCAGCGAGGCACCGCT
GGCTGCAACTGTTGTTGGAACCACGGAGGGTTCCGGCGCTGACTGGGCGG
GTAATGGCATCGCCACTAACCAGTTTGCGAGTAAGGACGAGCTGGGGGAG
CTGAGGCAAGCAATGGCGATGAAGATGAAACGTTCGACGATCGCCAAAGA
TTTTGAGGCGAAACAAGCCAATCCGGGCGGGGGGCTTGACCGCACGATAG
GCAGCGAGGCACCGCTGGCTGCAACTGTTGTTGGAACCACGGAGGGTTCC
GGCGCTGACTGGGCGGGTAATGGCATCGCCACTAACCAGTTTGCGAGTAA
GGACGAGCTGGGGGAGCTGAGGCAAGCAATGGCGATGAAGGACAAGGAGT
TACGGGATCTTCGAGACCGGATGCAGGACAAAGAAGGAGAGTTGGACACT
CTGCGGAAAGCGGGAAAGAACCTGCGGGAACGGCTTGACGAGAAGGAGGT
GGAAACCCGAGGCATAATGGATCGGGACAAGGAGTTACGGGATCTTCGAG
ACCGGATGCAGGACAAAGAAGGAGAGTTGGACACTCTGCGGAAAGCGGGA
AAGAACCTGCGGGAACGGCTTGACGAGAAGGAGGTGGAAACCCGAGGCAT
AATGGATCGGCTTTCCCGCATGGAGGACGCAGCCCGAAAGGTTTCTTCGG
GTGCGGGATGTAATTGTACTGTGATGTGACTTTCCCGCATGGAGGACGCA
GCCCGAAAGGTTTCTTCGGGTGCGGGATGTAATTGTACTGTGATGTGA
back to top