mRNA_C-linearis_contig10.607.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Match: D7G8Q7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q7_ECTSI) HSP 1 Score: 473 bits (1216), Expect = 1.280e-165 Identity = 236/326 (72.39%), Postives = 273/326 (83.74%), Query Frame = 1 Query: 1 MTRRGLSRVVARCDFVCASLYALIFLSLDAVGFRAAPWVSRRGTRSRDTCVRVAAWRGKGEPRGKEQEAADRISLAAPCSRKGLLHSMGLIGSAIVCGQALAERTEAADVRPEE-VPTVGKITKSGVKYFDYRVGEGPTPSWGQDCIIRFTMYGRSSPDDKLIKIQSSDNNKEPYLFKHGNGFQIKGMEEGMHSMSVGGKRRVIMPQGLGYTVQGLGPYPADPRKRDVLVQVLTSFEKTTTGELVMDIELLEAFDDEADQGYYEDAAVTPEQLQDLIQETGQFAGGVPLEKFKGQIASPMEDT-SSGLKKSDGGLPGQLGKDVLGG 972 M R LSRV+ +C C +L L+FL L+ +GFRA+PWV T SR+TCV + A RG GE RG+ +E + PCSR LL SMGL+GSA++ GQAL+ER EAA ++ EE VPTVGKITK+G+KYFD+RVGEGP+P WGQDCIIRFTMYGRS+PD+KLIKIQSSDNNKE YLFKHGNGFQIKGMEEGMHSM VGGKRRVIMPQ +GY+VQGLGPYPADPRKRD+LV+VLTSFEKTTTGELVMDIELL+AFDDEADQGYYED AVTPEQLQD+++ETG+F+GG P+EK GQ+ASPMEDT SS KK GLPGQLGKDV+GG Sbjct: 1 MARLELSRVIPKC-IACTALVVLMFLDLEVLGFRASPWVRSTATVSRETCVALPAGRGDGEWRGEGREPETGGNTGVPCSRMDLLRSMGLVGSAVIGGQALSERAEAAGMQEEEEVPTVGKITKAGIKYFDFRVGEGPSPRWGQDCIIRFTMYGRSTPDEKLIKIQSSDNNKEKYLFKHGNGFQIKGMEEGMHSMRVGGKRRVIMPQSMGYSVQGLGPYPADPRKRDILVEVLTSFEKTTTGELVMDIELLDAFDDEADQGYYEDTAVTPEQLQDIVRETGRFSGGQPMEKLPGQLASPMEDTTSSAAKKGGAGLPGQLGKDVMGG 325
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Match: A0A835YXX3_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX3_9STRA) HSP 1 Score: 203 bits (517), Expect = 6.080e-61 Identity = 115/222 (51.80%), Postives = 150/222 (67.57%), Query Frame = 1 Query: 241 RKGLLHSMGLIGS-AIVCGQALAERTEAADVRPEEVPTVGKITKSGVKYFDYRVGEGPTPSWGQDCIIRFTMYGRSSPDDKLIKIQSSDNNKEPYLFKHGNGFQIKGMEEGMHSMSVGGKRRVIMPQGLGYTVQGLGPYPADPRKRDVLVQVLTSFEKTTTGELVMDIELLEAFDDEADQGYYEDAAVTPEQLQDLIQETGQFAGG-VPLEKFKGQIASPME 900 R+ L + G++ S AI G A A+++E E TVGKITKSGVKYFD G G WG+ C I+FT+YGR + + +L ++ SSDNN EP+LFKHGNG QIKG+EEGMH+M VGGKRR+I+P LGYTV GLGP+PA R L ++L S T G+LVMD+ELL+AFDDEAD GYY D+++ E++QD+++ T G L+ GQ SP E Sbjct: 24 RQALATAAGVLASLAIRPGSAQAKQSEY------EAATVGKITKSGVKYFDAAEGSGDKIQWGKMCSIKFTLYGRPAQEGRLQRLDSSDNNGEPFLFKHGNGRQIKGLEEGMHTMRVGGKRRIIIPPTLGYTVSGLGPFPAGALSRMALDKMLDSLG--TNGQLVMDVELLDAFDDEADLGYYTDSSLNLEEMQDVMRVTDLLLDGKAKLQALPGQ--SPTE 235
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Match: A0A4D9D9B5_9STRA (Peptidylprolyl isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9B5_9STRA) HSP 1 Score: 154 bits (389), Expect = 8.220e-42 Identity = 81/177 (45.76%), Postives = 111/177 (62.71%), Query Frame = 1 Query: 295 QALAERTEAADVRPEEVPTVGKITKSGVKYFDYRVGEGPTPSWGQDCIIRFTMYGRSSPDDKLIKIQSSDNNKEPYLFKHGNGFQIKGMEEGMHSMSVGGKRRVIMPQGLGYTVQGLGPYPADPRKRDVLVQVLTSFE-KTTTGELVMDIELLEAFDDEADQGYYEDAAVTPEQLQD 822 QA A R + D+ P V TKSG++Y+D R GEG +P WGQ II++ Y R+SP KL+ + K PYL KHGNG I+G++EG+HSM +GG RR+++P LGYT GLGP P + +R +LV+ L E GE++ D+EL+ +DDEAD GYY+D P LQ+ Sbjct: 19 QAAANRVQDMDL-----PPVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDPGYLQE 190
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Match: W7TQC7_9STRA (Peptidylprolyl isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQC7_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.830e-40 Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 1 Query: 328 VRPEEVPTVGKITKSGVKYFDYRVGEGPTPSWGQDCIIRFTMYGRSSPDDKLIKIQSSDNNKEPYLFKHGNGFQIKGMEEGMHSMSVGGKRRVIMPQGLGYTVQGLGPYPADPRKRDVLVQVLTSFE-KTTTGELVMDIELLEAFDDEADQGYYEDAAVTPEQLQD 822 V+ ++P V TKSG++Y+D R GEG +P WGQ II++ Y R+SP KL+ + K PYL KHGNG I+G++EG+HSM +GG RR+++P LGYT GLGP P + +R +LV+ L E GE++ D+EL+ +DDEAD GYY+D P LQ+ Sbjct: 152 VQDMDLPAVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDPGYLQE 317
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Match: A0A6U3SBH4_9STRA (Peptidylprolyl isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SBH4_9STRA) HSP 1 Score: 145 bits (365), Expect = 2.110e-37 Identity = 84/181 (46.41%), Postives = 111/181 (61.33%), Query Frame = 1 Query: 364 TKSGVKYFDYRVGEGPTPSWGQDCIIRFTMYGR---SSPDDKLI--KIQSSDNNKEPYLFKHGNGFQIKGMEEGMHSMSVGGKRRVIMPQGLGYTVQGLGPYPADPRKRDVLVQVLTSFEKTTTGELVMDIELLEAFDDEADQGYYEDAAVTPEQLQDLIQETGQFAGGVPLEKFKGQIAS 891 TKSG+KY + R G GPTP +GQ C I + Y + S DK I K+Q D++ +L KHGNG + G++EG+H++ VGGKRR+I+P LG+ GLGP P P R L Q+L + G LV D+EL AFDDEADQGYYED ++TPEQ Q L F G E+ K ++A+ Sbjct: 132 TKSGLKYIELREGTGPTPKYGQLCSISYKAYIKLPDSVSSDKKISTKLQEFDSDNA-FLVKHGNGRILPGLDEGLHTIRVGGKRRIIVPPKLGFVSNGLGPLPETPWGRYKLNQLLNQMVEVKGGNLVFDVELRSAFDDEADQGYYEDRSLTPEQFQTL---RNNFERGAREEREKQKMAA 308
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Match: A0A7S2HMU8_9STRA (Peptidylprolyl isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HMU8_9STRA) HSP 1 Score: 137 bits (346), Expect = 3.380e-35 Identity = 69/174 (39.66%), Postives = 108/174 (62.07%), Query Frame = 1 Query: 340 EVPTVGKITKSGVKYFDYRVGEGPTPSWGQDCIIRFTMYGRSSPDDKLIKIQSS-DNNKEPYLFKHGNGFQIKGMEEGMHSMSVGGKRRVIMPQGLGYTVQGLGPYPADPRKRDVLVQVLTSFEKTTTGELVMDIELLEAFDDEADQGYYEDAAVTPEQLQDLIQETGQFAGGV 858 E+P+ G +KSG+KYFDY VG G P +GQ I+++ +++ +KL SS + Y+ KHGNG + G++EG+H+M VGGKRR+++P LGYTV GLGP+P + R +L ++L + + G + D+ L++A+DD+AD GYY+D + P L + +F V Sbjct: 81 ELPSSGFASKSGMKYFDYEVGPGSPPKYGQVIIVKYIASAKATGKEKLQIFDSSFERGGGDYIMKHGNGRCVLGLDEGIHTMRVGGKRRILVPPNLGYTVPGLGPFPPEAADRRILNKILAKMDDS--GYVAFDVMLIDAYDDDADAGYYDDTDLPPGVLDQVYGNIERFKQAV 252
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Match: A0A7S4NDU7_9STRA (Peptidylprolyl isomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NDU7_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.830e-34 Identity = 98/251 (39.04%), Postives = 128/251 (51.00%), Query Frame = 1 Query: 118 SRRGTRSRDTCVRVAAWRGKGEPRGKEQEAADRISLAAPCSRKGLLHSMGLIGSAIVCGQALAERTEAADVRPEEVPTVGKIT----KSGVKYFDYRVGEGPTPSWGQDCIIRFTMYGRSSPDDK--LIKIQSSDNNKEPYLFKHGNGFQIKGMEEGMHSMSVGGKRRVIMPQGLGYTVQGLGPYPADPRKRDVLVQVLTSFEKTTTGELVMDIELLEAFDDEADQGYYEDAAVTPEQLQDLIQETGQFAG 852 SRR R V AA PR Q AD + P GL S L +V G A E P G +T KSG+KY + R G GPTP +GQ I + Y + PD K K+ D+++ YL KHGNG I G++EG+H+M +GGKRR+I+P LGY G+GP P P R L +L + G +V D+EL A DDEADQGYYED +++PE D +++ Q AG Sbjct: 60 SRREALLRSASVAAAAAAALSAPR---QALADIEGVVTP---SGLTESGALEVPKVVPGGA------------PEAPAGGGVTLFQTKSGLKYIELREGSGPTPRYGQLVSISYKAYVKL-PDIKGQTQKLDEFDSDRA-YLIKHGNGRTIPGLDEGLHTMKIGGKRRIIIPPKLGYVSPGVGPIPEGPLARRKLNSLLDKMIEVRGGNVVFDVELRSAMDDEADQGYYEDGSLSPEDF-DTLRKNLQQAG 289
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Match: A0A7S1U697_9STRA (Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U697_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.470e-31 Identity = 72/187 (38.50%), Postives = 100/187 (53.48%), Query Frame = 1 Query: 334 PEEVPTVGKITKSGVKYFDYRVGEGPTPSWGQDCIIRFTMYGRSSPDDKLIKIQSSDNNKEPYLFKHGNGFQIKGMEEGMHSMSVGGKRRVIMPQGLGYTVQGLGPYPADPRKRDVLVQVLTSFEKTTTGELVMDIELLEAFDDEADQGYYEDA--AVTPEQLQDLIQETGQFAGGVPLEKFKGQIA 888 P G T+SGVKY++ G GPTP WG II+FT Y S +D+ +KI+ + N Y+FKHGNG Q++G+E+G+HSM +G RR+I+P L YT +GP P L L + G+++ D+ L+ F DEAD+GYY D AV P GVP+ KG + Sbjct: 70 PSAAGKPGFQTESGVKYYELTEGSGPTPQWGDTTIIKFTQYISRSANDEPVKIEDWNGNN--YVFKHGNGRQLEGLEDGIHSMKIGTTRRIIVPARLAYTTNQVGPLPRSTANLQKLTTELDAM--VNGGQIIFDVTLVNTFRDEADRGYYADETPAVDP--------------NGVPINIIKGSAS 238
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Match: A0A2V3IRB8_9FLOR (Peptidylprolyl isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRB8_9FLOR) HSP 1 Score: 127 bits (318), Expect = 3.700e-31 Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 1 Query: 316 EAADVRPEEVPTVGKITKSGVKYFDYRVGEGPTPSWGQDCIIRFTMYGRSSPDDKLIKIQSS-DNNKEPYLFKHGNGFQIKGMEEGMHSMSVGGKRRVIMPQGLGYTVQGLGPYPADPRKRDVLVQVLTSFEKTTTGELVMDIELLEAFDDEADQGYYEDAAVTPEQLQDLIQE 834 E + R E+ P G T SG+K+FD+ GEGPTP WG I++ +Y S D L+K S+ D K YL HGNG I G+EE +H+MSVGG+RR I+P +GY+ G P P ++R + + + G +V DIEL D D+GYY D T E+L +++E Sbjct: 64 EIENRRDEDRPLTGFQTISGLKFFDFTRGEGPTPQWGDILNIQYVLYTVSPSGDALVKHDSTYDRGKHGYLIHHGNGEHILGLEEALHTMSVGGRRRAIVPLKIGYSKNGFAPIPPSFQRRKEFIDAINDGD----GTVVFDIELRTIKKDPDDRGYYTDITPTDEELLRIVEE 233
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Match: A0A6U1ZUH9_TRICV (Peptidylprolyl isomerase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1ZUH9_TRICV) HSP 1 Score: 124 bits (310), Expect = 1.330e-30 Identity = 73/174 (41.95%), Postives = 101/174 (58.05%), Query Frame = 1 Query: 313 TEAADVRPEEVPTVGKI-TKSGVKYFDYRVGEGPTPSWGQDCIIRFTMYGRSSPD--DKLIKIQSSDNNKEPYLFKHGNGFQIKGMEEGMHSMSVGGKRRVIMPQGLGYTVQGLGPYPADPRKRDVLVQVLTSFEKTTTGELVMDIELLEAFDDEADQGYYEDAAVTPEQLQDL 825 T AA+ P + V TKSG+KY + R G GPTP +GQ I + Y + PD K K++ D+++ YL KHGNG + G++EG+H+M +GGKRR+I+ LGY GLGP P P R L +L + G +V D+EL DDEAD GYY D++++PE L Sbjct: 11 TPAANAAPTQEGGVTLFKTKSGLKYIELREGSGPTPRYGQLVSISYKAYVKL-PDIKGKPSKLEEFDSDRG-YLIKHGNGRIVPGLDEGIHTMKLGGKRRIIVSPKLGYVEPGLGPIPEGPLARMRLNNLLDKMVEVRGGNVVFDVELRTVMDDEADLGYYGDSSISPEDFNTL 182 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.607.1 >prot_C-linearis_contig10.607.1 ID=prot_C-linearis_contig10.607.1|Name=mRNA_C-linearis_contig10.607.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp MTRRGLSRVVARCDFVCASLYALIFLSLDAVGFRAAPWVSRRGTRSRDTCback to top mRNA from alignment at C-linearis_contig10:2846187..2849203+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.607.1 ID=mRNA_C-linearis_contig10.607.1|Name=mRNA_C-linearis_contig10.607.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3017bp|location=Sequence derived from alignment at C-linearis_contig10:2846187..2849203+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2846187..2849203+ >mRNA_C-linearis_contig10.607.1 ID=mRNA_C-linearis_contig10.607.1|Name=mRNA_C-linearis_contig10.607.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at C-linearis_contig10:2846187..2849203+ (Chordaria linearis ClinC8C monoicous)back to top |