mRNA_C-linearis_contig10.606.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.606.1
Unique NamemRNA_C-linearis_contig10.606.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.606.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.060e-69
Identity = 116/183 (63.39%), Postives = 141/183 (77.05%), Query Frame = 1 
Query:  280 MRYGVNTAAPFVGMKREEGNDYPFAKQYCIRSSNDRGTRVMVVQEMADESQ--SLPEGKLKNVLDLEGEADLGAISTTNGMVTRLKATIEGHAYLLGDYIVRVGQCRKGAVYRGLCLEVEYLPAVRVVDGLAMITALIPSID--GNFVSTSDLCDPRLFGTEPFYSAKHAALQTTDLFNKVFA 816
            M++GVN AAPFVGMK+EEG +YPFAKQ+CIR  NDRGTRVMVVQEMA+E    ++PEGKL +VL+ E   +    +   G+VTR+KA+IEGHAY LGD++VRVG+C+KGAV+RGL LEVEY P  RV DGL+MI A IPSID  G F + SDL D  +FG  P +S KH ALQ TDLFN+VFA
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRR-NDRGTRVMVVQEMAEEPSYAAVPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTFTAVSDLQDLAMFGRGPQFSVKHNALQITDLFNEVFA 182
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BLAST of mRNA_C-linearis_contig10.606.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.530e-24
Identity = 67/141 (47.52%), Postives = 88/141 (62.41%), Query Frame = 1 
Query:  280 MRYGVNTAAPFVGM-KREEGNDYPFAKQYCIRSSNDRGTRVMVVQEMADESQSLPEGKLKNVLDLEGEADLGAISTTNGMVTRLKATIEGHAYLLGDYIVRVGQCRKGAVYRGLCLEVEYLPAVRVVDGLAMITALIPSID 699
            MR+GVNTA  F+G   R++   YPF +   +R S++ G RV +VQEM   + +L +     V D   EAD+   +      TRLKA IEG A+ LGD+ VRVG CRKG+ YRGL +EVEY P   V DG AMI AL+P++D
Sbjct:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPG-RVCLVQEMGKRAATLEQVL---VGDDALEADM---AKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLD 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI1.060e-6963.39Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z8G4_9STRA1.530e-2447.52Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2844018..2846081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size819
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.606.1prot_C-linearis_contig10.606.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2844018..2846081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.976148-CDS-C-linearis_contig10:2844017..28442091622927344.976148-CDS-C-linearis_contig10:2844017..2844209Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2844018..2844209 -
1690879641.0869043-CDS-C-linearis_contig10:2844017..28442091690879641.0869043-CDS-C-linearis_contig10:2844017..2844209Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2844018..2844209 -
1622927344.9875193-CDS-C-linearis_contig10:2844359..28444431622927344.9875193-CDS-C-linearis_contig10:2844359..2844443Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2844360..2844443 -
1690879641.097677-CDS-C-linearis_contig10:2844359..28444431690879641.097677-CDS-C-linearis_contig10:2844359..2844443Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2844360..2844443 -
1622927345.0013332-CDS-C-linearis_contig10:2844736..28449191622927345.0013332-CDS-C-linearis_contig10:2844736..2844919Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2844737..2844919 -
1690879641.1058354-CDS-C-linearis_contig10:2844736..28449191690879641.1058354-CDS-C-linearis_contig10:2844736..2844919Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2844737..2844919 -
1622927345.0115325-CDS-C-linearis_contig10:2845159..28452881622927345.0115325-CDS-C-linearis_contig10:2845159..2845288Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2845160..2845288 -
1690879641.1144774-CDS-C-linearis_contig10:2845159..28452881690879641.1144774-CDS-C-linearis_contig10:2845159..2845288Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2845160..2845288 -
1622927345.0228782-CDS-C-linearis_contig10:2845488..28456001622927345.0228782-CDS-C-linearis_contig10:2845488..2845600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2845489..2845600 -
1690879641.124839-CDS-C-linearis_contig10:2845488..28456001690879641.124839-CDS-C-linearis_contig10:2845488..2845600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2845489..2845600 -
1622927345.0324404-CDS-C-linearis_contig10:2845962..28460811622927345.0324404-CDS-C-linearis_contig10:2845962..2846081Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2845963..2846081 -
1690879641.1342587-CDS-C-linearis_contig10:2845962..28460811690879641.1342587-CDS-C-linearis_contig10:2845962..2846081Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2845963..2846081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.606.1

>prot_C-linearis_contig10.606.1 ID=prot_C-linearis_contig10.606.1|Name=mRNA_C-linearis_contig10.606.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=273bp
MFVTEPLGIFEFSDFTHNCCVCTSKGPARRLKMSGTAVSCLFGKPMGSEE
GLQAKRSLEDRVVLLGGELMDTLWNVEVTYKMRQKKKRALGSEMRYGVNT
AAPFVGMKREEGNDYPFAKQYCIRSSNDRGTRVMVVQEMADESQSLPEGK
LKNVLDLEGEADLGAISTTNGMVTRLKATIEGHAYLLGDYIVRVGQCRKG
AVYRGLCLEVEYLPAVRVVDGLAMITALIPSIDGNFVSTSDLCDPRLFGT
EPFYSAKHAALQTTDLFNKVFA*
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mRNA from alignment at C-linearis_contig10:2844018..2846081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.606.1 ID=mRNA_C-linearis_contig10.606.1|Name=mRNA_C-linearis_contig10.606.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2064bp|location=Sequence derived from alignment at C-linearis_contig10:2844018..2846081- (Chordaria linearis ClinC8C monoicous)
ATGTTTGTCACGGAACCCCTTGGAATTTTCGAATTTTCTGACTTCACTCA
TAACTGCTGTGTCTGTACTTCGAAGGGACCTGCGAGGCGCCTAAAAATGA
GCGGGACAGCAGTATCCTGGTGAGAGATTTTTTGTATGCTGCACAGCAGC
GTTGATTCTATGTCGTTAATCTCAAACGTTGCTGACCTTGATACGGGACA
CAATAAATTGTCTGGACAGCAGTAAAATGCTTCCTATCCCACTATAATAG
ACTGTAGTCTACACAGCAGTCTATCAACAGCTGATGCTTACCGCATGTAG
CACTTTCGCCATTACTTACCCCAATTACATTCAAAATATAGGTGGGTCCA
TGTAGAAAGGGCTGGTCGGAAGATGCCCGTCGTTTAAGTGTGAGAATGTG
GATAGAGGTTCAGCACATCTGTATGAACGAAAGTGGCCTCACCCACGAGT
GTCTTGTGGGTTCTGATGTCTGCTGTTGCAGTCTGTTTGGAAAGCCCATG
GGAAGTGAGGAAGGCCTGCAAGCCAAGAGAAGCCTTGAAGATCGCGTTGT
TCTCCTTGGAGGAGAGCTGATGGACACTCTTTGGAATGTCGAGGTGAGGA
GCTTGTCAGTCGGAGGCGGAGATTACACGCACACGCCATGTCCAAACTCG
GTGCCGTCTTCATGCCATCATTACACGCACACGCCATGTCCAAACTCGGT
GCCGTCTTCGTGCCATCATGGTGAATGACCAACTTGTTCGGTCCACTGCC
CCGCCCCGCCCACTTGTTTGCTGGTTATGCCTCTGTTGGTCAGGTCACGT
ACAAAATGAGACAGAAGAAAAAGAGGGCTCTAGGAAGTGAGATGAGATAT
GGCGTCAACACAGCGGCTCCTTTTGTGGGGATGAAACGGGAGGAGGGGAA
CGATTACCCGTTCGCCAAGCAGGTGAAATTCGGACATATACCGTGGTGTA
GAGTTAGCTACAGCAGCAGCTATTATGCTTAAGATCCTGGTCCTCCACAA
TGCGTAGAAAATGTTGTCGCTAACCGCGCGGAGAACCGTTTCTAAGCGAA
CCGAGCGTAGTTTCTGGGTATGTATCGCAGTTGCACATGCCCCCCTCGTC
CCGGCTCTTTGAGTTCTCGACAGTTGCCGATCTGATCTCCATGTTGTTTT
GTTCTCTGTCAGTACTGCATACGGAGCTCGAATGACCGAGGTACCCGAGT
GATGGTAGTGCAAGAGATGGCGGACGAATCGCAGTCATTGCCGGAAGGCA
AGCTGAAGAACGTCTTGGACCTGGAGGGCGAAGCTGACCTGGGCGCAATC
TCGACCACAAACGGCATGGTGACGCGACTCAAAGCGACCATCGAAGTGAG
ATAAGGGAAATACTGAAGATGCACAAATCCGTTTGCTGGCGGTTGTTTTC
TTGGATCTGACCATTTTCGCCGAGCGTAGTGCTTTCCTCCACTCGCGAAG
AGAATCAACCTCTAGCATCTGCTGAAAGTCTAACGGTGCCGTCACCGCGC
CGTGGCTTTTCCTCTTTGATCATTTTCGCGCGCGATTTCGCGAGCAAGAA
ATCTCATGCGCACAAAAACAAAACCTCTTTCACACATTTTGGTCGCCGCT
GGATATATTGCAATGATTGTTGTTCCTCGTCTGTCCAGGGACACGCTTAT
CTTTTGGGCGATTACATTGTTCGAGTCGGACAGTGCAGGAAAGGAGCCGT
CTACCGAGGGTTGTGTCTCGAGGTGAGCTCCAAATACAGCAGTCTCGGTT
GACCTTGACCGCGGCAGGAATTTTCAATTTTCCAAGCTTCTTCCCAAGAC
CCAACAACATCCTTTCTTCCTTTCTGACGAACTTCCCCTCGCATTTGTGC
CTTTGTCACGTATCATACACAGGTGGAATATCTGCCTGCGGTCAGAGTGG
TGGATGGACTCGCGATGATCACTGCGCTAATTCCCTCTATCGACGGTAAT
TTCGTATCAACCAGCGACCTTTGCGACCCGCGCTTGTTCGGAACGGAGCC
TTTTTATTCAGCTAAACATGCCGCATTGCAGACAACAGATTTGTTCAACA
AAGTCTTTGCGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig10:2844018..2846081-

>mRNA_C-linearis_contig10.606.1 ID=mRNA_C-linearis_contig10.606.1|Name=mRNA_C-linearis_contig10.606.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at C-linearis_contig10:2844018..2846081- (Chordaria linearis ClinC8C monoicous)
ATGTTTGTCACGGAACCCCTTGGAATTTTCGAATTTTCTGACTTCACTCA
TAACTGCTGTGTCTGTACTTCGAAGGGACCTGCGAGGCGCCTAAAAATGA
GCGGGACAGCAGTATCCTGATGTTTGTCACGGAACCCCTTGGAATTTTCG
AATTTTCTGACTTCACTCATAACTGCTGTGTCTGTACTTCGAAGGGACCT
GCGAGGCGCCTAAAAATGAGCGGGACAGCAGTATCCTGTCTGTTTGGAAA
GCCCATGGGAAGTGAGGAAGGCCTGCAAGCCAAGAGAAGCCTTGAAGATC
GCGTTGTTCTCCTTGGAGGAGAGCTGATGGACACTCTTTGGAATGTCGAG
TCTGTTTGGAAAGCCCATGGGAAGTGAGGAAGGCCTGCAAGCCAAGAGAA
GCCTTGAAGATCGCGTTGTTCTCCTTGGAGGAGAGCTGATGGACACTCTT
TGGAATGTCGAGGTCACGTACAAAATGAGACAGAAGAAAAAGAGGGCTCT
AGGAAGTGAGATGAGATATGGCGTCAACACAGCGGCTCCTTTTGTGGGGA
TGAAACGGGAGGAGGGGAACGATTACCCGTTCGCCAAGCAGGTCACGTAC
AAAATGAGACAGAAGAAAAAGAGGGCTCTAGGAAGTGAGATGAGATATGG
CGTCAACACAGCGGCTCCTTTTGTGGGGATGAAACGGGAGGAGGGGAACG
ATTACCCGTTCGCCAAGCAGTACTGCATACGGAGCTCGAATGACCGAGGT
ACCCGAGTGATGGTAGTGCAAGAGATGGCGGACGAATCGCAGTCATTGCC
GGAAGGCAAGCTGAAGAACGTCTTGGACCTGGAGGGCGAAGCTGACCTGG
GCGCAATCTCGACCACAAACGGCATGGTGACGCGACTCAAAGCGACCATC
GAATACTGCATACGGAGCTCGAATGACCGAGGTACCCGAGTGATGGTAGT
GCAAGAGATGGCGGACGAATCGCAGTCATTGCCGGAAGGCAAGCTGAAGA
ACGTCTTGGACCTGGAGGGCGAAGCTGACCTGGGCGCAATCTCGACCACA
AACGGCATGGTGACGCGACTCAAAGCGACCATCGAAGGACACGCTTATCT
TTTGGGCGATTACATTGTTCGAGTCGGACAGTGCAGGAAAGGAGCCGTCT
ACCGAGGGTTGTGTCTCGAGGGACACGCTTATCTTTTGGGCGATTACATT
GTTCGAGTCGGACAGTGCAGGAAAGGAGCCGTCTACCGAGGGTTGTGTCT
CGAGGTGGAATATCTGCCTGCGGTCAGAGTGGTGGATGGACTCGCGATGA
TCACTGCGCTAATTCCCTCTATCGACGGTAATTTCGTATCAACCAGCGAC
CTTTGCGACCCGCGCTTGTTCGGAACGGAGCCTTTTTATTCAGCTAAACA
TGCCGCATTGCAGACAACAGATTTGTTCAACAAAGTCTTTGCGTAGGTGG
AATATCTGCCTGCGGTCAGAGTGGTGGATGGACTCGCGATGATCACTGCG
CTAATTCCCTCTATCGACGGTAATTTCGTATCAACCAGCGACCTTTGCGA
CCCGCGCTTGTTCGGAACGGAGCCTTTTTATTCAGCTAAACATGCCGCAT
TGCAGACAACAGATTTGTTCAACAAAGTCTTTGCGTAG
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