prot_C-linearis_contig10.606.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.606.1
Unique Nameprot_C-linearis_contig10.606.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length273
Homology
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BLAST of mRNA_C-linearis_contig10.606.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.060e-69
Identity = 116/183 (63.39%), Postives = 141/183 (77.05%), Query Frame = 0 
Query:   94 MRYGVNTAAPFVGMKREEGNDYPFAKQYCIRSSNDRGTRVMVVQEMADESQ--SLPEGKLKNVLDLEGEADLGAISTTNGMVTRLKATIEGHAYLLGDYIVRVGQCRKGAVYRGLCLEVEYLPAVRVVDGLAMITALIPSID--GNFVSTSDLCDPRLFGTEPFYSAKHAALQTTDLFNKVFA 272
            M++GVN AAPFVGMK+EEG +YPFAKQ+CIR  NDRGTRVMVVQEMA+E    ++PEGKL +VL+ E   +    +   G+VTR+KA+IEGHAY LGD++VRVG+C+KGAV+RGL LEVEY P  RV DGL+MI A IPSID  G F + SDL D  +FG  P +S KH ALQ TDLFN+VFA
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRR-NDRGTRVMVVQEMAEEPSYAAVPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTFTAVSDLQDLAMFGRGPQFSVKHNALQITDLFNEVFA 182
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BLAST of mRNA_C-linearis_contig10.606.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.530e-24
Identity = 67/141 (47.52%), Postives = 88/141 (62.41%), Query Frame = 0 
Query:   94 MRYGVNTAAPFVGM-KREEGNDYPFAKQYCIRSSNDRGTRVMVVQEMADESQSLPEGKLKNVLDLEGEADLGAISTTNGMVTRLKATIEGHAYLLGDYIVRVGQCRKGAVYRGLCLEVEYLPAVRVVDGLAMITALIPSID 233
            MR+GVNTA  F+G   R++   YPF +   +R S++ G RV +VQEM   + +L +     V D   EAD+   +      TRLKA IEG A+ LGD+ VRVG CRKG+ YRGL +EVEY P   V DG AMI AL+P++D
Sbjct:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPG-RVCLVQEMGKRAATLEQVL---VGDDALEADM---AKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLD 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.606.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI1.060e-6963.39Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z8G4_9STRA1.530e-2447.52Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 176..232
e-value: 1.3E-6
score: 28.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2844018..2846081 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.606.1mRNA_C-linearis_contig10.606.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 2844018..2846081 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.606.1 ID=prot_C-linearis_contig10.606.1|Name=mRNA_C-linearis_contig10.606.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=273bp
MFVTEPLGIFEFSDFTHNCCVCTSKGPARRLKMSGTAVSCLFGKPMGSEE
GLQAKRSLEDRVVLLGGELMDTLWNVEVTYKMRQKKKRALGSEMRYGVNT
AAPFVGMKREEGNDYPFAKQYCIRSSNDRGTRVMVVQEMADESQSLPEGK
LKNVLDLEGEADLGAISTTNGMVTRLKATIEGHAYLLGDYIVRVGQCRKG
AVYRGLCLEVEYLPAVRVVDGLAMITALIPSIDGNFVSTSDLCDPRLFGT
EPFYSAKHAALQTTDLFNKVFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20