mRNA_C-linearis_contig10.606.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.606.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI) HSP 1 Score: 222 bits (565), Expect = 1.060e-69 Identity = 116/183 (63.39%), Postives = 141/183 (77.05%), Query Frame = 1 Query: 280 MRYGVNTAAPFVGMKREEGNDYPFAKQYCIRSSNDRGTRVMVVQEMADESQ--SLPEGKLKNVLDLEGEADLGAISTTNGMVTRLKATIEGHAYLLGDYIVRVGQCRKGAVYRGLCLEVEYLPAVRVVDGLAMITALIPSID--GNFVSTSDLCDPRLFGTEPFYSAKHAALQTTDLFNKVFA 816
M++GVN AAPFVGMK+EEG +YPFAKQ+CIR NDRGTRVMVVQEMA+E ++PEGKL +VL+ E + + G+VTR+KA+IEGHAY LGD++VRVG+C+KGAV+RGL LEVEY P RV DGL+MI A IPSID G F + SDL D +FG P +S KH ALQ TDLFN+VFA
Sbjct: 1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRR-NDRGTRVMVVQEMAEEPSYAAVPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTFTAVSDLQDLAMFGRGPQFSVKHNALQITDLFNEVFA 182
BLAST of mRNA_C-linearis_contig10.606.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.530e-24 Identity = 67/141 (47.52%), Postives = 88/141 (62.41%), Query Frame = 1 Query: 280 MRYGVNTAAPFVGM-KREEGNDYPFAKQYCIRSSNDRGTRVMVVQEMADESQSLPEGKLKNVLDLEGEADLGAISTTNGMVTRLKATIEGHAYLLGDYIVRVGQCRKGAVYRGLCLEVEYLPAVRVVDGLAMITALIPSID 699
MR+GVNTA F+G R++ YPF + +R S++ G RV +VQEM + +L + V D EAD+ + TRLKA IEG A+ LGD+ VRVG CRKG+ YRGL +EVEY P V DG AMI AL+P++D
Sbjct: 1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPG-RVCLVQEMGKRAATLEQVL---VGDDALEADM---AKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLD 134 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.606.1 >prot_C-linearis_contig10.606.1 ID=prot_C-linearis_contig10.606.1|Name=mRNA_C-linearis_contig10.606.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=273bp MFVTEPLGIFEFSDFTHNCCVCTSKGPARRLKMSGTAVSCLFGKPMGSEEback to top mRNA from alignment at C-linearis_contig10:2844018..2846081- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.606.1 ID=mRNA_C-linearis_contig10.606.1|Name=mRNA_C-linearis_contig10.606.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2064bp|location=Sequence derived from alignment at C-linearis_contig10:2844018..2846081- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2844018..2846081- >mRNA_C-linearis_contig10.606.1 ID=mRNA_C-linearis_contig10.606.1|Name=mRNA_C-linearis_contig10.606.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at C-linearis_contig10:2844018..2846081- (Chordaria linearis ClinC8C monoicous)back to top |