mRNA_C-linearis_contig10.604.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.604.1
Unique NamemRNA_C-linearis_contig10.604.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: D7G8Q3_ECTSI (Mitochondrial ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q3_ECTSI)

HSP 1 Score: 477 bits (1227), Expect = 1.900e-163
Identity = 234/305 (76.72%), Postives = 266/305 (87.21%), Query Frame = 3 
Query:   45 RCSIRDSLLVRQASLPPMTAVGGLCCRELSTSSQLSTKQQMEGFTVKDKRPPRARVAKEKRKQYLAQRQASFDAEQKKAASLGLDWGIRSALVLERLPVIVEEYADWQRDFWDLQARQAQYGAKFPEEMGFKYDDEQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAEWRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDAVGVYLKHLI 959
            RC++  S  VR+  L P+  +    CRELS SS L+ KQQ+EGFT+KD+RPPR RVAK+KRKQYLA+R+ +F+AEQ+KA SLGLDWGIRSAL+LERLPVIVEEY DWQRDFWDLQ +QA YGAKFP EMGFKYDDE+ LTMEQ+LE+SPVPLAPRRTPADESNDRTTLDRALDERL+LIVKP+ G EWRLPESAW+ GETIRQ AERTAQQ+L K+AT +GQ DDVAQLHFVGNCPAGWFWR  DEEQ  Q   FGDKVFINRVQLICGQPT+V+ +AAEHLWVTKHEIGEYLG+++GVYLKHLI
Sbjct:    5 RCTMLSSSAVRRVKLRPLAVLLAPNCRELS-SSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKDAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTADEEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI 308
[Close]
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: W7TRZ1_9STRA (Mitochondrial ribosomal protein l46 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ1_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.570e-28
Identity = 84/240 (35.00%), Postives = 122/240 (50.83%), Query Frame = 3 
Query:  234 YLAQRQASFDAEQKKAASLGLDWGIRSALVLERLPVIVEEYADWQRDFWDLQARQAQYGAKFPEEMGFKYDD-EQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVK-PKPGAEWRLPESAWQGGETIRQAAERTAQQVLRKT--ATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSG---SFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDA 932
            YL  R A     +  A    L W I +A ++ER P+I++E  DW+  + ++Q   A++G  FP E+       E   + +++L   P  LAPR T AD  NDRTTL+RAL ERL L+++ P     W LP +  +GG         +    +RKT  AT R    D  + +   N P G  WR   E    ++G   ++GDKVF  R Q + G+  +V     E +WVT+ E+GEYL  A
Sbjct:  102 YLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLS----MRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 337
[Close]
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: A0A4D9D2E5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.810e-21
Identity = 67/205 (32.68%), Postives = 103/205 (50.24%), Query Frame = 3 
Query:  345 VEEYADWQRDFWDLQARQAQYGAKFPEEMGFK-YDDEQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVK-PKPGAEWRLP----ESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSG---SFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDA 932
            ++E  DW+  + ++Q   A++G  FP E+    +  E   + + +L   P  LAPR T AD  NDRTTL+RAL ERL L+++ P     W LP    E   +GG+    +   T +  +R+         +  + +   N P G  WR   E    ++G   ++GDKVF  R Q + G+  +V     E +WVT+ E+GEYL  A
Sbjct:    1 MKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGHAAELDRSDDDVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRNTHEATVRRFM------GEKFEAYVPSNAPVGVHWRVPSEPSTGKTGGEQAYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 199
[Close]
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: A0A2P6VD62_9CHLO (Serine threonine-kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VD62_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 1.500e-20
Identity = 80/217 (36.87%), Postives = 114/217 (52.53%), Query Frame = 3 
Query:  315 ALVLERLPVIVEEYADWQRDFWDLQARQAQYGAKFPEEMGFKYDDEQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAEWRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEA-AEHLWVTKHEIGEYLG--DAVGVYLKHL 956
            A+V ERLPV+V E  +W+R++++ Q   A    K+ +E+  ++ D +   M++    S  P APR T AD +NDR +L R LD+RL ++V+ K G  W LP+     GET+RQ AER     +   A          + +FVGN PAG              G  G  +F +R QLI G P +      +EH+WVTK E+GEYL   D + V  K L
Sbjct:   52 AVVFERLPVVVPEDPEWEREYFEWQDGLA---GKYRKELPREFTDLKDSEMKEDAGASYEP-APRVTAADHANDRRSLKRRLDQRLFMLVRQKGG--WTLPQQENAEGETMRQTAERALADAVELEAV---------RPYFVGNAPAG----------HAPLGDAGT-LFFHRCQLIQGVPALRGGSGYSEHVWVTKEELGEYLQQPDVLAVMQKML 242
[Close]
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: V4A4N9_LOTGI (MRP-L46 domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A4N9_LOTGI)

HSP 1 Score: 98.2 bits (243), Expect = 1.740e-19
Identity = 72/234 (30.77%), Postives = 113/234 (48.29%), Query Frame = 3 
Query:  300 WGIRSALVLERLPVIVEEYADWQRDFWDLQAR-QAQYGAKFPEEMGFKYDDE--------QPLTMEQI---------------LERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAE--WRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYL 923
            W +  A+ LER P+I +E  D+++   D  ++ + +       E+ F+ DD+        + LT+E++                E      APRRT ADE +DR + +R LDE+L+LIVK + G    W LP S W  GE++RQ A R              Q  D  +  F+GN P G+F       ++V + S G KVF  +     G   + E + +++LWVTK E+ +Y+
Sbjct:    1 WDLFGAVCLERRPIITKEMTDYEKKMSDFLSKLELENSLLSDHELRFR-DDKLHAKRIKLEELTVEELENPREMAVEAEDKWKTELEEFTFAPRRTVADEKDDRKSTERKLDEKLILIVKQRLGKTDVWALPHSQWLDGESMRQTANRALD----------SQCGDQIKSCFIGNAPCGFF--KYKYPKKVVNESIGRKVFFFKALYENGPVKLKEGDVSDYLWVTKSELSDYM 221
[Close]
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: E1ZJP2_CHLVA (MRP-L46 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJP2_CHLVA)

HSP 1 Score: 97.4 bits (241), Expect = 4.790e-19
Identity = 79/220 (35.91%), Postives = 113/220 (51.36%), Query Frame = 3 
Query:  279 AASLGLDWGIRSALVLERLPVIVEEYADWQRDFWDLQ-ARQAQYGAKFPEEMGFKYDDEQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGA---EWRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEA-AEHLWVTKHEIGEYL 923
            AAS G  +G+    VLERLPVI+ +  +W+++  + Q A   +Y    P++     D E+    +      P   APR T AD++NDR +L R LD+RL ++V+PK G+    W L +   Q GET+RQ AER   + +          + V Q +FVGN PAG           V  G  G  +F +R QLI G P +      +EHLWV K E+ EY+
Sbjct:   50 AASGGKLFGV---CVLERLPVIIPDPPEWEQEHREWQQAITEKYFKVLPKDFVELKDSERQAD-DAGARYEP---APRITAADKANDRRSLQRRLDQRLFMLVRPKGGSGGGAWSLMQRENQEGETMRQTAERALAECV---------DESVVQPYFVGNAPAG----------HVALGEAGT-LFFHRCQLIQGVPVLRGGSGYSEHLWVAKDELPEYI 242
[Close]
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: A0A2P6TJ63_CHLSO (Glycosyl group 1 family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TJ63_CHLSO)

HSP 1 Score: 102 bits (253), Expect = 6.900e-19
Identity = 76/218 (34.86%), Postives = 115/218 (52.75%), Query Frame = 3 
Query:  279 AASLGLDWGIRSALVLERLPVIVEEYADWQRDFWDLQARQAQYGAKFPEEMGFKYDDEQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAEWRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEA-AEHLWVTKHEIGEYLGD 929
            AA+ G  +G   A VLERLPV+V E   W+++F++ QA      AK+ +++  ++ D +   ++   + S    A R T AD +NDR +L R LD+RL ++VKPK G  W L +     GET+RQ AER     +  +A          Q +FVGN PAG          Q+  G+     F +R QLI G P +      +E++WV K E+G+Y+ +
Sbjct:   47 AAAAGKLYG---ACVLERLPVVVPESPAWEQEFFEWQAS---VRAKYMKQLPPEFTDVKESEVQG--DASSYEPASRETEADRTNDRRSLQRRLDQRLFMLVKPK-GGSWALMQRENVEGETMRQTAERALADAVDTSAV---------QPYFVGNAPAG--------HVQLSDGT----TFFHRCQLIQGVPALQGGSGYSEYVWVAKDELGDYIQE 234
[Close]
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: A0A091NH04_9PASS (MRP-L46 domain-containing protein (Fragment) n=2 Tax=Acanthisitta chloris TaxID=57068 RepID=A0A091NH04_9PASS)

HSP 1 Score: 93.2 bits (230), Expect = 1.380e-17
Identity = 84/240 (35.00%), Postives = 113/240 (47.08%), Query Frame = 3 
Query:  300 WGIRSALVLERLPVIVEEYADWQRDFWDLQAR------QAQYG----AKFPEEMGFK------YDDEQ----PLTMEQILERS------PVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAE--WRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGW----FWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYL 923
            W +  A+ L RLP + +E    + +   L A+      ++ Y      K  EE   K      YDD++     L M Q LE            APR T AD++N+RT+LDR LD  LML+VK K G +  W LP+  WQ GET+R  AER         AT+ G   D  Q   +GN P G     F +A   E  V +  F  K F+    L   +P       A+HLWVTK+E+G+YL
Sbjct:   17 WRLFGAMCLLRLPRVTQEMEKEEEEVAALMAQVRGEQEKSCYSDHEIRKLEEEEQLKKRKESLYDDDEGSGKTLIMAQDLEDKWEQKLLQFKAAPRITDADKNNNRTSLDRKLDSNLMLLVKQKIGNQELWLLPQVEWQPGETLRSTAERAM-------ATFLG---DHVQAKILGNAPYGIYKYKFPKAIRTEDNVGAKVFFFKAFLQSSDLSRAEPK------ADHLWVTKNELGDYL 240
[Close]
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: UPI001ABDC5A1 (39S ribosomal protein L46, mitochondrial isoform X1 n=4 Tax=Bufo TaxID=8383 RepID=UPI001ABDC5A1)

HSP 1 Score: 93.2 bits (230), Expect = 2.080e-17
Identity = 73/242 (30.17%), Postives = 115/242 (47.52%), Query Frame = 3 
Query:  285 SLGLDWGIRSALVLERLPVIVEEYA-------------DWQRDFW-DLQARQAQYGAKFPEEMGFKYD----DEQPLTMEQILERS------PVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAE--WRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDA 932
            S G  W +  A+ L+R  V+ +  A             D ++ F+ D + +  +   +   +    YD    +EQ + M Q LE +       + LAPR T ADE NDRT+L+R L+  L+L+VK K G E  W  P+  W  GET+RQ AER    +           D+  + HF+GN P G F++    +        G KVF  +  L+ G+ ++   +  +++WV K E+ +YL  A
Sbjct:   36 SSGSPWRLHGAVCLKRPAVVSQSKAAIQQEVDELLQQIDLEKSFYSDHELQLMKDAERLRRKQSDLYDSDEEEEQDIVMAQDLEDTWEQKWKQMKLAPRVTEADEKNDRTSLNRKLENNLVLLVKEKIGNEDIWMFPQIEWVAGETMRQTAERALSDLS----------DNRVEAHFLGNAPCG-FYKYKFPKTMRNEDIVGAKVFFFKA-LLKGKSSLTNQKKRDYVWVCKDELKDYLKPA 265
[Close]
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: V8P641_OPHHA (39S ribosomal protein L46, mitochondrial (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8P641_OPHHA)

HSP 1 Score: 90.1 bits (222), Expect = 5.060e-17
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 3 
Query:  501 APRRTPADESNDRTTLDRALDERLMLIVKPKPGAE--WRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDA 932
            APR T AD+ N RT+L+R LD+ L+L+VK K G E  W LP++ WQ GET+R   ER    +          P    Q  F+GN P G++     +  + ++   G KVF  +  L  G P +   E A++LWV+K E+G+YL  A
Sbjct:   56 APRITEADQKNIRTSLNRKLDQNLLLLVKQKFGDEDIWLLPQTEWQQGETLRNTVERVLVTL----------PGIQTQAKFLGNAPCGFYKFKFPKAIRTET-DIGGKVFFFKAFLE-GSPQLPSKEKADYLWVSKGELGDYLKPA 189
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Q3_ECTSI1.900e-16376.72Mitochondrial ribosomal protein L46 isoform 2 n=2 ... [more]
W7TRZ1_9STRA1.570e-2835.00Mitochondrial ribosomal protein l46 n=2 Tax=Nannoc... [more]
A0A4D9D2E5_9STRA4.810e-2132.68Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2P6VD62_9CHLO1.500e-2036.87Serine threonine-kinase n=1 Tax=Micractinium condu... [more]
V4A4N9_LOTGI1.740e-1930.77MRP-L46 domain-containing protein (Fragment) n=1 T... [more]
E1ZJP2_CHLVA4.790e-1935.91MRP-L46 domain-containing protein n=1 Tax=Chlorell... [more]
A0A2P6TJ63_CHLSO6.900e-1934.86Glycosyl group 1 family n=1 Tax=Chlorella sorokini... [more]
A0A091NH04_9PASS1.380e-1735.00MRP-L46 domain-containing protein (Fragment) n=2 T... [more]
UPI001ABDC5A12.080e-1730.1739S ribosomal protein L46, mitochondrial isoform X... [more]
V8P641_OPHHA5.060e-1738.3639S ribosomal protein L46, mitochondrial (Fragment... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2831883..2838045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score478.8
Seed ortholog evalue1.9e-132
Seed eggNOG ortholog2880.D7G8Q3
Preferred nameMRPL46
KEGG rclassRC02416
KEGG koko:K02519,ko:K05607,ko:K08860,ko:K17427
KEGG ReactionR02085
KEGG Pathwayko00280,ko01100,ko04137,ko04140,ko04141,ko04210,ko04214,ko04932,ko05010,ko05160,ko05162,ko05164,ko05168,ko05169,map00280,map01100,map04137,map04140,map04141,map04210,map04214,map04932,map05010,map05160,map05162,map05164,map05168,map05169
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG4548@1,KOG4548@2759
Ec32 ortholog description39S ribosomal protein L46, mitochondrial
Ec32 orthologEc-22_002600.1
EC2.7.11.1,4.2.1.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko03012,ko03029
Exons5
Model size1755
Cds size927
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.815708-UTR-C-linearis_contig10:2831882..28319171622927344.815708-UTR-C-linearis_contig10:2831882..2831917Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2831883..2831917 +
1690879640.9284728-UTR-C-linearis_contig10:2831882..28319171690879640.9284728-UTR-C-linearis_contig10:2831882..2831917Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2831883..2831917 +
1622927344.8720818-UTR-C-linearis_contig10:2837252..28380451622927344.8720818-UTR-C-linearis_contig10:2837252..2838045Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2837253..2838045 +
1690879641.0063622-UTR-C-linearis_contig10:2837252..28380451690879641.0063622-UTR-C-linearis_contig10:2837252..2838045Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2837253..2838045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.824352-CDS-C-linearis_contig10:2831917..28322011622927344.824352-CDS-C-linearis_contig10:2831917..2832201Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2831918..2832201 +
1690879640.944375-CDS-C-linearis_contig10:2831917..28322011690879640.944375-CDS-C-linearis_contig10:2831917..2832201Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2831918..2832201 +
1622927344.8347797-CDS-C-linearis_contig10:2832483..28326751622927344.8347797-CDS-C-linearis_contig10:2832483..2832675Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2832484..2832675 +
1690879640.95458-CDS-C-linearis_contig10:2832483..28326751690879640.95458-CDS-C-linearis_contig10:2832483..2832675Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2832484..2832675 +
1622927344.8427732-CDS-C-linearis_contig10:2832876..28329971622927344.8427732-CDS-C-linearis_contig10:2832876..2832997Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2832877..2832997 +
1690879640.9662313-CDS-C-linearis_contig10:2832876..28329971690879640.9662313-CDS-C-linearis_contig10:2832876..2832997Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2832877..2832997 +
1622927344.854332-CDS-C-linearis_contig10:2834849..28350351622927344.854332-CDS-C-linearis_contig10:2834849..2835035Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2834850..2835035 +
1690879640.9820514-CDS-C-linearis_contig10:2834849..28350351690879640.9820514-CDS-C-linearis_contig10:2834849..2835035Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2834850..2835035 +
1622927344.8638148-CDS-C-linearis_contig10:2837108..28372521622927344.8638148-CDS-C-linearis_contig10:2837108..2837252Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2837109..2837252 +
1690879640.9923687-CDS-C-linearis_contig10:2837108..28372521690879640.9923687-CDS-C-linearis_contig10:2837108..2837252Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2837109..2837252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.604.1prot_C-linearis_contig10.604.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2831918..2837252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.604.1

>prot_C-linearis_contig10.604.1 ID=prot_C-linearis_contig10.604.1|Name=mRNA_C-linearis_contig10.604.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=309bp
MLGRCSIRDSLLVRQASLPPMTAVGGLCCRELSTSSQLSTKQQMEGFTVK
DKRPPRARVAKEKRKQYLAQRQASFDAEQKKAASLGLDWGIRSALVLERL
PVIVEEYADWQRDFWDLQARQAQYGAKFPEEMGFKYDDEQPLTMEQILER
SPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAEWRLPESAWQG
GETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEE
QQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDAV
GVYLKHLI*
back to top

mRNA from alignment at C-linearis_contig10:2831883..2838045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.604.1 ID=mRNA_C-linearis_contig10.604.1|Name=mRNA_C-linearis_contig10.604.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6163bp|location=Sequence derived from alignment at C-linearis_contig10:2831883..2838045+ (Chordaria linearis ClinC8C monoicous)
CACACATCTGTCTCAGGTCTCGCTGTACGCTGACCATGCTCGGGCGATGT
AGTATTCGTGATTCCTTGCTCGTACGGCAAGCTAGTCTTCCGCCGATGAC
CGCGGTTGGAGGATTGTGTTGTCGAGAGCTGAGTACGTCCTCGCAGCTGT
CGACCAAGCAACAGATGGAAGGCTTCACCGTCAAGGACAAGCGACCACCG
CGTGCTCGTGTGGCCAAGGAGAAACGAAAACAGTACCTGGCTCAGCGGCA
GGCTTCGTTTGATGCAGAGCAGAAGAAGGCAGCCAGTCTTGGTCTCGATT
GGGGGATCAGGAGTGCCCTGTGAGTCCACATAGCAGTCGAAGTGTCCGGG
AAAAAGCACACGTATGTATCTATGGCTGCGTGCGCTGTACAGCATGCAGT
ACAAGATACATCCAACGCTACCATGTACGACAATCCCGCCTTAGTATTAC
TCAAGCTCTACATGTTTTGCAGTTAAAATCGGGAAGAAACACGGTTCTTT
CATGTCGAATGCGTGTAAGGAAGGTACTATAAGCAGCACCCGCTCGTGTT
TTGAATCGCCCGTTGCCCTCTTTCCTGTCTGTGACTTCTGTTCTTGCACA
GCGTCTTGGAGCGTCTCCCGGTCATCGTGGAGGAGTACGCTGACTGGCAG
CGTGATTTTTGGGATCTGCAGGCACGACAAGCACAATATGGTGCAAAGTT
CCCTGAAGAAATGGGCTTCAAGTACGATGACGAGCAGCCGCTGACGATGG
AGCAGATTCTGGAGCGAAGCCCTGTCCCTCTCGCCCCTAGGCGGTAAGAG
CACGAGCGACACCCCTAACTCCTGTCTACTCGAACGTCCTCCTTGTTTCT
CTTTTTATTGAGTCTCTACGCGCGTTTGGGGTTTGTGCAGGAGTGCTCTA
GACCAACGAATTGAAACGGCACAGCTTTTGTTGCTGTCTTCCAAGACATT
TCATAGCTGTGTCTGTTCCTGGACGGCGTGTGTTCTTCTCGCAGCACACC
CGCGGACGAGTCAAATGACCGTACGACCTTAGACCGGGCACTCGACGAGC
GACTAATGTTGATCGTCAAGCCTAAACCTGGGGCGGAGTGGCGTCTTCCC
GAGAGTGCATGGCAGGTGAGAGAGAGCCGTACATACGGACCGTACAACTT
CGTGTGTACACCTTGTTCGACTTCAGAGCTGTGGAAGGGATATTAACCCT
TTTAGAACTCACGCCCTCTGAAAAAAAAAGTTATCAAGAACAAAAATCGG
ACCCTTCTGGGTGCCCGCTGATTGGCCGAGAATTAACAACAGTCTCTCCA
GAAACCGTCCGCGGGGACCCACCAGCATTTGGGGGCAGCTTGAATACCGA
TTGCAAATCAAACTTTGCCAAAAAAATTGGTGACACTTTCTATACTGAAA
CCCAAGTCAAACTTGTTTGGGGTGCTAGACCATAGAGAAGTTCCCTATTA
TGGAGAGATGAGGTGCCGCAGGGTTGCTGCGTGTGTAAACACACCCAAGC
AGCCCTCACAACACCCAAAATAGCGTGGCGGGCGAAACAACCCGCTCTAT
GCTCAGCAGACGTTTGTTTTCGAGAGCCACCGCGAAGCGGCGTGTGTGTG
CTGTCAGCTCAACGGCTCAAACCGCTGGGGGAGCCGCGGAAATACGGAAC
TTGGAATTGCCCCGGAAAAATAATTTTGAGATTTTTTAGATATCCAGCAC
AACTCAGTTGTGTCGCCAGCGCTGCTCTGGAGCTGTGTGGAGGGCACGTA
GGGCAGGTATAGTGTCCACACCTCTCGGCAGGGTGCTCCTAGGCCTTTGT
GCGGGTTCCAAAGACCACCAGTGCACCTCAGAGTCGTACAACAGCAGTGA
TCAAAGTTGGGGATCACCAAATCGTCACCAAAACGGCCTCCAGTGCTAAA
AGGGTTGAGGACAGGAGGACGACGGTTGGAATTACACCCTCGCAAACACT
TCGATAAAAAAATTAGGGCCCCATGCTCCTATCCAAAAATTAAGTCAAAA
CCACCCTCCACCGCTTAGCTTCTGAAATGGCATAGTCTGTAGGTGCCTGC
CACATATGTTTACATTTGTATCAGTAGAGGACATCATGGCGAAGGGTGTG
ATGCGTGCTGCATGCTTATATCTGCTGCTGGGGCGGAGTTATCAACAGCC
GCAGCAGTCTGCAGCAGTGGCTCTAGAACTCCGCAATCTGGGCCCACGAT
AGCAAACATCCACTGCTTTACTCGCCACCACAGACCCTCACCTCCTCGAC
AACGGGTCTACGAGCTACTGCTGTGGACCCGCAATTGAGGAGATTGGGGT
CTGTGGCGGCCAGCACAGCAGTGGATGTTTGCTGTCGTCGGCCCAGATTT
GCGGAATTTTGACCTGCTGCTGCGGTGCTCGACAACTCCGCCCCAGCAGC
AGATCTGCACATGCCAACGCACGTCACACCCTCCTCCATGATGTCCTCCA
CTGACACAGACGTTTTATGTGGCAGAAACACCCAACCCAAACCTACTTAT
GAACGCCCGAAAATGGCCTGTTTTATCTTGATTTTTGGATGGGGAAGAAA
ATATCTTGATTTCAGAATGCTTGGGGGTGGTTTCCTACGTGATACTTGTT
AAAGAGCTGCCCCGTTCGCCGCTCGATGAGCGAACCAATACGTTTCTTCT
TGGGCAACGCTTCCCTACTGGTCGGGCGGATCTGCTGTTTGGTTGATGCG
TGCTTCTCGAGCATTTTCAGATTCACGAAACCCCCAAAAATATACTTTGT
CCCCCGTCCTTAAGCATTGCAGCTGCCTTTAGCTGGCTTTGGTTTTGTCG
ATGCGCATGAATAGATTCGTCCATTTTTCTGGACACAGCAGTCAAGCAGA
CTACTCGTGTAACTTAATTATGTTAGTGAGGCACTCCGTGCTGTCAATGC
TTTATCGAGCAAGCAGCACCAGCTTGCTTCGCTCATTGCTCGCTCTGTTT
CGCTGGCATGCTAACAGGGTGGAGAGACTATCCGCCAAGCGGCAGAGCGA
ACAGCGCAACAGGTGCTCCGGAAGACAGCCACTTGGAGGGGTCAGCCGGA
CGATGTAGCTCAGCTCCATTTCGTGGGAAATTGTCCTGCGGGTTGGTTTT
GGCGTGCAGGAGACGAGGAGCAGCAGGTCCAGAGCGGGAGCTTCGGGGAC
AAGGTAAATATAACGGAAAGGACCAAAACAAGGTATACCTTGGTCTTTTG
CGGCCAAAGCAAGGTACAGGGTAGAACAGAGACAACAGAGCCCAAATACA
GCCATATGATTAGCCGAAACACCGCCGCACATCGTGGTGGTGGCCGCAGT
TTCGGACGGTATACCTTGCGGTGGCTATTCAACTCCCTAGGATACCTTGC
TTTGGCCGCGCGGCACCTTGTTTTGGCCGCCGCGCACGGGGCTGTTCGCT
CAACCGACACACGCGCCGAAGGCCTCTCGCCAACGCCCCGCCGGTAACGT
GTACGCATACGCACACGCGTACGAGCACGCGGAGGAACTTTCGGACCCCT
TCGAAAACCTCTGTCTTTATGCGTGACCGGAGTGGTCGCGTGTGCTGCTG
CTGTTGTGTCACCCCCGTGCGCGCATGAGGCACCCCACCAACCGCACAAC
CACACACAACAAGAGCACCATGAGCGACGGTGGGCTGCCTCCACAAAACC
CTCTCCTTGGCCAACGCTTTCCCGATACCAAGACTATGACGGTCGTGGTG
GCAGCGGAGTTCAACAAAGACGGACGTGGGTTCAAGATGGGCGTTGGCGG
AAGCAATCAGAAGAAGTGGATCTGCTCTGGGGGCCGGGGTCGGGGTTGCG
AGCGATGGCTTCTTCAGCGAACTTGGCGATGACGGAACCCTTGCCCTTCG
CAACCCCACCCGAGCAGTTTCTGTGGTTCGTGTCCACGTGCTAGAGTTTC
CATTCTCCAGTCGAACGCCGCCTGGTTCCGCGCACCTCACATGGGCAGCC
GGCATCTTTCCAGACGCTGGCGGAAGCAATCACAAGAAGTGGATATGCTC
TGGGCGCCGGGGTCGGGGTTGCGAGCGATGACTTCTTCAGCGAACTTGGC
GATGACGGAACCCTTGCTCTTCGCAACCTCACCCGAGCAGTTTCTGTGGT
TCGTGTCCACGTGCTAGAGGTTCCATTCTCCAGTCGAACGCTGCCTGGTT
CCGCGTACCTCACATGGGCAGCCGGCATCTTTCCCGACGCGCCCAGAGCA
GATCCACTTCTTCTGATTGCTTCCGCCAACGCCCATCTTAAACCCACGTC
CGTCTTTGCTGAACTCCGCTGCCACCACGACCGTCATAGTCTTGGTATCG
GGAAAGCGTTGGCCAAGGAGAGGGTTTTGTGGAGGCAGCCCACCGTCGCT
CATGGTGCTCTTGTTGTGTGTGGTTGTGCGATTGGTGGGGTGCCTCATGC
GCGCACGGGGTTGACACAACAGCAGCAGCACACGCGACCACTCCGGTCAC
GCATAAAGACAGAGGTTTTCGAAGGGGTCCGAAAGTTCCTCCGCGTGCTC
GTACGCGTGTGCGTATGCGTACACGTTACCGGCGGGGCGTTGGCGAGAGG
CCTTCGGCGCGTGTGTCGGTTGAGCGAACAGCCCCGTGCGCGGCGGCCAA
AACAAGGTGCCGCGCGGCCAAAGCAAGGTATCCTAGGGAGTTGAATAGCC
ACCGCAAGGTATACCGTCCGAAACTGCGGCCACCACCACGATGTGCGGCG
GTGTTTCGGCTAATCATATGGCTGTATTTGGGCTCTGTTGTCTCTGTTCT
ACCCTGTACCCTGCTTTGGCCGCAACCAAGGTATACCTTGTTTTGGCCGT
TTCCGTAAATATAAATAAATACCTACCTTCTTCCTAAACTTGGTATCATC
AGACCAGAGGCGGAAAAAATATGGATTCAGCATTGTCGCTCTACTCGAAA
GTGTTGATGTTCACACGGCGAGGATAGTTTGTGGCTAAGTTGGTCTACAA
ATTGGCGAGCACTATGTGTATAACCTTCATTTAAGTCTCCTGGCCAAACA
ATCTTGGTGGACATTGCTCCATCCTACACGGCTTTCCCGTTGTCAACCAA
ACCCCTTGTTGAACCCAGGTGCTTCGAGTTTTGGAGAGGTGCTTTCTGAA
AGGACTTTGGTACGAATGGCCGTCTCCTATTGCAACATCCCTCTGTGCGG
TCGACTTATGTTGAAGTGAAGAGCCCACGAACGAACGAGCCCAACATAAA
TGCCGCGCCTTCTGTTGGCTCTCCAGGTGTTTATCAACCGGGTGCAGCTC
ATTTGTGGGCAACCAACGATCGTCGAGAGTGAAGCAGCCGAACATCTCTG
GGTGACCAAGCACGAGATTGGGGAATACCTCGGGGACGCCGTGGGGGTTT
ACTTGAAACACTTGATCTAAAGGCGGCGGCTGCTGTACGCACTAGGTTTT
TTATCGCATGAGGCAACGCTCGGATGTGTGTCTTGAGAGTGGTGCCAGGA
ATTGGCGTGATTGGCCCTCGCCCGGTTGATCGTGATCGGCGTACCTTCAT
TTGAAACACGGCTTAGACCTGATCTTCAGCCGGTGGACGGAACATTTTGA
CAACGCAACAGGCCGAAGCGCTTCAGCAGTGTGTGTTGTTTCTCCGTCTT
GTACATTTTGTCTTTCGACCGTATTCTGTGGGAACTGCTGTGGGCCGTCG
AGTTCTCCTTCGGTGTGTACAAGCCTATGTGAGTTGTGAGGATCGTACCG
GGAAAAGAAATTCCTTTGTCCCAGAACTAGATGTGCTGGTCGATGCACGA
CAGACATCACACCCAAAATCATCGATTTGTCTCGACAGAATGATTTTGAG
AATCCGTCACAGCTCGTATTATTTGGAATCGGTTCGGAGGACAAATCAGA
TACGGCAGTCGAGCGTGTTGCCTTGTGAATGAAAAGGGGGCCGTTTGAAG
GTTGTAGTAGGGGAATTCCCGAGTGACAAAAAAAGTAGCCCACCACCTTT
CGCGCGGTTGGGAACACGGCAAGCGCCATATATGTAGCGAAAGGGGTGTG
GACTGCAAAAGGCACGATTTAATATCGGAGAAAACGCAAACGTCCAAATG
AGTTCGTGTGGGGTCTTCGCGTAAGCGGTGAACGTGCGAAAGTTGCCGTT
CAACGTCCAAATGAGTTCGTGTGGGGTCTTCGCGTAAGCGGTGAACGTGC
GAAAGTTGCCGTT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:2831883..2838045+

>mRNA_C-linearis_contig10.604.1 ID=mRNA_C-linearis_contig10.604.1|Name=mRNA_C-linearis_contig10.604.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at C-linearis_contig10:2831883..2838045+ (Chordaria linearis ClinC8C monoicous)
ATGCTCGGGCGATGTAGTATTCGTGATTCCTTGCTCGTACGGCAAGCTAG
TCTTCCGCCGATGACCGCGGTTGGAGGATTGTGTTGTCGAGAGCTGAGTA
CGTCCTCGCAGCTGTCGACCAAGCAACAGATGGAAGGCTTCACCGTCAAG
GACAAGCGACCACCGCGTGCTCGTGTGGCCAAGGAGAAACGAAAACAGTA
CCTGGCTCAGCGGCAGGCTTCGTTTGATGCAGAGCAGAAGAAGGCAGCCA
GTCTTGGTCTCGATTGGGGGATCAGGAGTGCCCTATGCTCGGGCGATGTA
GTATTCGTGATTCCTTGCTCGTACGGCAAGCTAGTCTTCCGCCGATGACC
GCGGTTGGAGGATTGTGTTGTCGAGAGCTGAGTACGTCCTCGCAGCTGTC
GACCAAGCAACAGATGGAAGGCTTCACCGTCAAGGACAAGCGACCACCGC
GTGCTCGTGTGGCCAAGGAGAAACGAAAACAGTACCTGGCTCAGCGGCAG
GCTTCGTTTGATGCAGAGCAGAAGAAGGCAGCCAGTCTTGGTCTCGATTG
GGGGATCAGGAGTGCCCTCGTCTTGGAGCGTCTCCCGGTCATCGTGGAGG
AGTACGCTGACTGGCAGCGTGATTTTTGGGATCTGCAGGCACGACAAGCA
CAATATGGTGCAAAGTTCCCTGAAGAAATGGGCTTCAAGTACGATGACGA
GCAGCCGCTGACGATGGAGCAGATTCTGGAGCGAAGCCCTGTCCCTCTCG
CCCCTAGGCGCGTCTTGGAGCGTCTCCCGGTCATCGTGGAGGAGTACGCT
GACTGGCAGCGTGATTTTTGGGATCTGCAGGCACGACAAGCACAATATGG
TGCAAAGTTCCCTGAAGAAATGGGCTTCAAGTACGATGACGAGCAGCCGC
TGACGATGGAGCAGATTCTGGAGCGAAGCCCTGTCCCTCTCGCCCCTAGG
CGCACACCCGCGGACGAGTCAAATGACCGTACGACCTTAGACCGGGCACT
CGACGAGCGACTAATGTTGATCGTCAAGCCTAAACCTGGGGCGGAGTGGC
GTCTTCCCGAGAGTGCATGGCAGCACACCCGCGGACGAGTCAAATGACCG
TACGACCTTAGACCGGGCACTCGACGAGCGACTAATGTTGATCGTCAAGC
CTAAACCTGGGGCGGAGTGGCGTCTTCCCGAGAGTGCATGGCAGGGTGGA
GAGACTATCCGCCAAGCGGCAGAGCGAACAGCGCAACAGGTGCTCCGGAA
GACAGCCACTTGGAGGGGTCAGCCGGACGATGTAGCTCAGCTCCATTTCG
TGGGAAATTGTCCTGCGGGTTGGTTTTGGCGTGCAGGAGACGAGGAGCAG
CAGGTCCAGAGCGGGAGCTTCGGGGACAAGGGTGGAGAGACTATCCGCCA
AGCGGCAGAGCGAACAGCGCAACAGGTGCTCCGGAAGACAGCCACTTGGA
GGGGTCAGCCGGACGATGTAGCTCAGCTCCATTTCGTGGGAAATTGTCCT
GCGGGTTGGTTTTGGCGTGCAGGAGACGAGGAGCAGCAGGTCCAGAGCGG
GAGCTTCGGGGACAAGGTGTTTATCAACCGGGTGCAGCTCATTTGTGGGC
AACCAACGATCGTCGAGAGTGAAGCAGCCGAACATCTCTGGGTGACCAAG
CACGAGATTGGGGAATACCTCGGGGACGCCGTGGGGGTTTACTTGAAACA
CTTGATCTAAGTGTTTATCAACCGGGTGCAGCTCATTTGTGGGCAACCAA
CGATCGTCGAGAGTGAAGCAGCCGAACATCTCTGGGTGACCAAGCACGAG
ATTGGGGAATACCTCGGGGACGCCGTGGGGGTTTACTTGAAACACTTGAT
CTAA
back to top