prot_C-linearis_contig10.604.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.604.1
Unique Nameprot_C-linearis_contig10.604.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length309
Homology
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: D7G8Q3_ECTSI (Mitochondrial ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q3_ECTSI)

HSP 1 Score: 477 bits (1228), Expect = 5.530e-168
Identity = 234/305 (76.72%), Postives = 266/305 (87.21%), Query Frame = 0
Query:    4 RCSIRDSLLVRQASLPPMTAVGGLCCRELSTSSQLSTKQQMEGFTVKDKRPPRARVAKEKRKQYLAQRQASFDAEQKKAASLGLDWGIRSALVLERLPVIVEEYADWQRDFWDLQARQAQYGAKFPEEMGFKYDDEQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAEWRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDAVGVYLKHLI 308
            RC++  S  VR+  L P+  +    CRELS SS L+ KQQ+EGFT+KD+RPPR RVAK+KRKQYLA+R+ +F+AEQ+KA SLGLDWGIRSAL+LERLPVIVEEY DWQRDFWDLQ +QA YGAKFP EMGFKYDDE+ LTMEQ+LE+SPVPLAPRRTPADESNDRTTLDRALDERL+LIVKP+ G EWRLPESAW+ GETIRQ AERTAQQ+L K+AT +GQ DDVAQLHFVGNCPAGWFWR  DEEQ  Q   FGDKVFINRVQLICGQPT+V+ +AAEHLWVTKHEIGEYLG+++GVYLKHLI
Sbjct:    5 RCTMLSSSAVRRVKLRPLAVLLAPNCRELS-SSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKDAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTADEEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI 308          
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: W7TRZ1_9STRA (Mitochondrial ribosomal protein l46 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ1_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.060e-30
Identity = 84/240 (35.00%), Postives = 122/240 (50.83%), Query Frame = 0
Query:   67 YLAQRQASFDAEQKKAASLGLDWGIRSALVLERLPVIVEEYADWQRDFWDLQARQAQYGAKFPEEMGFKYDD-EQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVK-PKPGAEWRLPESAWQGGETIRQAAERTAQQVLRKT--ATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSG---SFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDA 299
            YL  R A     +  A    L W I +A ++ER P+I++E  DW+  + ++Q   A++G  FP E+       E   + +++L   P  LAPR T AD  NDRTTL+RAL ERL L+++ P     W LP +  +GG         +    +RKT  AT R    D  + +   N P G  WR   E    ++G   ++GDKVF  R Q + G+  +V     E +WVT+ E+GEYL  A
Sbjct:  102 YLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLS----MRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 337          
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: A0A2P6VD62_9CHLO (Serine threonine-kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VD62_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 2.930e-22
Identity = 80/217 (36.87%), Postives = 114/217 (52.53%), Query Frame = 0
Query:   94 ALVLERLPVIVEEYADWQRDFWDLQARQAQYGAKFPEEMGFKYDDEQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAEWRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEA-AEHLWVTKHEIGEYLG--DAVGVYLKHL 307
            A+V ERLPV+V E  +W+R++++ Q   A    K+ +E+  ++ D +   M++    S  P APR T AD +NDR +L R LD+RL ++V+ K G  W LP+     GET+RQ AER     +   A          + +FVGN PAG              G  G  +F +R QLI G P +      +EH+WVTK E+GEYL   D + V  K L
Sbjct:   52 AVVFERLPVVVPEDPEWEREYFEWQDGLA---GKYRKELPREFTDLKDSEMKEDAGASYEP-APRVTAADHANDRRSLKRRLDQRLFMLVRQKGG--WTLPQQENAEGETMRQTAERALADAVELEAV---------RPYFVGNAPAG----------HAPLGDAGT-LFFHRCQLIQGVPALRGGSGYSEHVWVTKEELGEYLQQPDVLAVMQKML 242          
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: A0A4D9D2E5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.130e-22
Identity = 67/205 (32.68%), Postives = 103/205 (50.24%), Query Frame = 0
Query:  104 VEEYADWQRDFWDLQARQAQYGAKFPEEMGFK-YDDEQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVK-PKPGAEWRLP----ESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSG---SFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDA 299
            ++E  DW+  + ++Q   A++G  FP E+    +  E   + + +L   P  LAPR T AD  NDRTTL+RAL ERL L+++ P     W LP    E   +GG+    +   T +  +R+         +  + +   N P G  WR   E    ++G   ++GDKVF  R Q + G+  +V     E +WVT+ E+GEYL  A
Sbjct:    1 MKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGHAAELDRSDDDVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRNTHEATVRRFM------GEKFEAYVPSNAPVGVHWRVPSEPSTGKTGGEQAYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 199          
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: V4A4N9_LOTGI (MRP-L46 domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A4N9_LOTGI)

HSP 1 Score: 98.2 bits (243), Expect = 1.320e-20
Identity = 72/234 (30.77%), Postives = 113/234 (48.29%), Query Frame = 0
Query:   89 WGIRSALVLERLPVIVEEYADWQRDFWDLQAR-QAQYGAKFPEEMGFKYDDE--------QPLTMEQI---------------LERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAE--WRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYL 296
            W +  A+ LER P+I +E  D+++   D  ++ + +       E+ F+ DD+        + LT+E++                E      APRRT ADE +DR + +R LDE+L+LIVK + G    W LP S W  GE++RQ A R              Q  D  +  F+GN P G+F       ++V + S G KVF  +     G   + E + +++LWVTK E+ +Y+
Sbjct:    1 WDLFGAVCLERRPIITKEMTDYEKKMSDFLSKLELENSLLSDHELRFR-DDKLHAKRIKLEELTVEELENPREMAVEAEDKWKTELEEFTFAPRRTVADEKDDRKSTERKLDEKLILIVKQRLGKTDVWALPHSQWLDGESMRQTANRALD----------SQCGDQIKSCFIGNAPCGFF--KYKYPKKVVNESIGRKVFFFKALYENGPVKLKEGDVSDYLWVTKSELSDYM 221          
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: A0A2P6TJ63_CHLSO (Glycosyl group 1 family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TJ63_CHLSO)

HSP 1 Score: 101 bits (252), Expect = 3.030e-20
Identity = 76/216 (35.19%), Postives = 114/216 (52.78%), Query Frame = 0
Query:   82 AASLGLDWGIRSALVLERLPVIVEEYADWQRDFWDLQARQAQYGAKFPEEMGFKYDDEQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAEWRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEA-AEHLWVTKHEIGEYL 296
            AA+ G  +G   A VLERLPV+V E   W+++F++ QA      AK+ +++  ++ D +   ++   + S    A R T AD +NDR +L R LD+RL ++VKPK G  W L +     GET+RQ AER     +  +A          Q +FVGN PAG          Q+  G+     F +R QLI G P +      +E++WV K E+G+Y+
Sbjct:   47 AAAAGKLYG---ACVLERLPVVVPESPAWEQEFFEWQAS---VRAKYMKQLPPEFTDVKESEVQG--DASSYEPASRETEADRTNDRRSLQRRLDQRLFMLVKPK-GGSWALMQRENVEGETMRQTAERALADAVDTSAV---------QPYFVGNAPAG--------HVQLSDGT----TFFHRCQLIQGVPALQGGSGYSEYVWVAKDELGDYI 232          
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: E1ZJP2_CHLVA (MRP-L46 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJP2_CHLVA)

HSP 1 Score: 97.4 bits (241), Expect = 3.750e-20
Identity = 79/220 (35.91%), Postives = 113/220 (51.36%), Query Frame = 0
Query:   82 AASLGLDWGIRSALVLERLPVIVEEYADWQRDFWDLQ-ARQAQYGAKFPEEMGFKYDDEQPLTMEQILERSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGA---EWRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEA-AEHLWVTKHEIGEYL 296
            AAS G  +G+    VLERLPVI+ +  +W+++  + Q A   +Y    P++     D E+    +      P   APR T AD++NDR +L R LD+RL ++V+PK G+    W L +   Q GET+RQ AER   + +          + V Q +FVGN PAG           V  G  G  +F +R QLI G P +      +EHLWV K E+ EY+
Sbjct:   50 AASGGKLFGV---CVLERLPVIIPDPPEWEQEHREWQQAITEKYFKVLPKDFVELKDSERQAD-DAGARYEP---APRITAADKANDRRSLQRRLDQRLFMLVRPKGGSGGGAWSLMQRENQEGETMRQTAERALAECV---------DESVVQPYFVGNAPAG----------HVALGEAGT-LFFHRCQLIQGVPVLRGGSGYSEHLWVAKDELPEYI 242          
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: A0A091NH04_9PASS (MRP-L46 domain-containing protein (Fragment) n=2 Tax=Acanthisitta chloris TaxID=57068 RepID=A0A091NH04_9PASS)

HSP 1 Score: 93.2 bits (230), Expect = 1.360e-18
Identity = 84/240 (35.00%), Postives = 113/240 (47.08%), Query Frame = 0
Query:   89 WGIRSALVLERLPVIVEEYADWQRDFWDLQAR------QAQYG----AKFPEEMGFK------YDDEQ----PLTMEQILERS------PVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAE--WRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGW----FWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYL 296
            W +  A+ L RLP + +E    + +   L A+      ++ Y      K  EE   K      YDD++     L M Q LE            APR T AD++N+RT+LDR LD  LML+VK K G +  W LP+  WQ GET+R  AER         AT+ G   D  Q   +GN P G     F +A   E  V +  F  K F+    L   +P       A+HLWVTK+E+G+YL
Sbjct:   17 WRLFGAMCLLRLPRVTQEMEKEEEEVAALMAQVRGEQEKSCYSDHEIRKLEEEEQLKKRKESLYDDDEGSGKTLIMAQDLEDKWEQKLLQFKAAPRITDADKNNNRTSLDRKLDSNLMLLVKQKIGNQELWLLPQVEWQPGETLRSTAERAM-------ATFLG---DHVQAKILGNAPYGIYKYKFPKAIRTEDNVGAKVFFFKAFLQSSDLSRAEPK------ADHLWVTKNELGDYL 240          
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: UPI001ABDC5A1 (39S ribosomal protein L46, mitochondrial isoform X1 n=4 Tax=Bufo TaxID=8383 RepID=UPI001ABDC5A1)

HSP 1 Score: 92.8 bits (229), Expect = 2.780e-18
Identity = 73/242 (30.17%), Postives = 115/242 (47.52%), Query Frame = 0
Query:   84 SLGLDWGIRSALVLERLPVIVEEYA-------------DWQRDFW-DLQARQAQYGAKFPEEMGFKYD----DEQPLTMEQILERS------PVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAE--WRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDA 299
            S G  W +  A+ L+R  V+ +  A             D ++ F+ D + +  +   +   +    YD    +EQ + M Q LE +       + LAPR T ADE NDRT+L+R L+  L+L+VK K G E  W  P+  W  GET+RQ AER    +           D+  + HF+GN P G F++    +        G KVF  +  L+ G+ ++   +  +++WV K E+ +YL  A
Sbjct:   36 SSGSPWRLHGAVCLKRPAVVSQSKAAIQQEVDELLQQIDLEKSFYSDHELQLMKDAERLRRKQSDLYDSDEEEEQDIVMAQDLEDTWEQKWKQMKLAPRVTEADEKNDRTSLNRKLENNLVLLVKEKIGNEDIWMFPQIEWVAGETMRQTAERALSDLS----------DNRVEAHFLGNAPCG-FYKYKFPKTMRNEDIVGAKVFFFKA-LLKGKSSLTNQKKRDYVWVCKDELKDYLKPA 265          
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Match: A0A670K2L2_PODMU (39S ribosomal protein L46, mitochondrial n=3 Tax=Lacertinae TaxID=162266 RepID=A0A670K2L2_PODMU)

HSP 1 Score: 91.7 bits (226), Expect = 6.300e-18
Identity = 75/237 (31.65%), Postives = 121/237 (51.05%), Query Frame = 0
Query:   82 AASLGLDWGIRSALVLERLPVIVEEYADWQRDFWDL----QARQAQYG----AKFPEE-----MGFKYDDEQPLTMEQILE-------RSPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAE--WRLPESAWQGGETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEEQQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYL 296
            +A++G  W +  AL L+R P + +E +  +++  +L    +  ++ Y      +F EE            EQ + + Q +E       R   P APR T AD+ NDRT+L+R LD+ L+L+VK K G +  W LP++ WQ GET+R  AER         A+  G      +  F+GN P G++     +  Q + G+ G KVF  +  L+ G    + +E  +H+WV+K E+ +YL
Sbjct:   30 SAAVGPKWRLFGALCLQRPPRVSQEMSPEEKEMTELLQQVEMEKSLYSDHELRRFAEEERXXXXXXXXXXEQEIVLIQDVEDLWEQKFRKFNP-APRITEADKKNDRTSLNRKLDQNLLLLVKQKLGDQDIWLLPQTEWQEGETLRATAERAL-------ASLSGTH---MEAKFLGNAPCGFYKYKFPKAAQTEDGT-GAKVFFFKA-LLQGSHLPLANEKVDHVWVSKGELADYL 253          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.604.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Q3_ECTSI5.530e-16876.72Mitochondrial ribosomal protein L46 isoform 2 n=2 ... [more]
W7TRZ1_9STRA3.060e-3035.00Mitochondrial ribosomal protein l46 n=2 Tax=Nannoc... [more]
A0A2P6VD62_9CHLO2.930e-2236.87Serine threonine-kinase n=1 Tax=Micractinium condu... [more]
A0A4D9D2E5_9STRA4.130e-2232.68Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
V4A4N9_LOTGI1.320e-2030.77MRP-L46 domain-containing protein (Fragment) n=1 T... [more]
A0A2P6TJ63_CHLSO3.030e-2035.19Glycosyl group 1 family n=1 Tax=Chlorella sorokini... [more]
E1ZJP2_CHLVA3.750e-2035.91MRP-L46 domain-containing protein n=1 Tax=Chlorell... [more]
A0A091NH04_9PASS1.360e-1835.00MRP-L46 domain-containing protein (Fragment) n=2 T... [more]
UPI001ABDC5A12.780e-1830.1739S ribosomal protein L46, mitochondrial isoform X... [more]
A0A670K2L2_PODMU6.300e-1831.6539S ribosomal protein L46, mitochondrial n=3 Tax=L... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.79.10coord: 167..308
e-value: 9.3E-28
score: 98.6
IPR04000839S ribosomal protein L46, mitochondrialPANTHERPTHR1312439S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATEDcoord: 63..300
IPR015797NUDIX hydrolase-like domain superfamilySUPERFAMILY55811Nudixcoord: 180..298

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2831918..2837252 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.604.1mRNA_C-linearis_contig10.604.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 2831883..2838045 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.604.1 ID=prot_C-linearis_contig10.604.1|Name=mRNA_C-linearis_contig10.604.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=309bp
MLGRCSIRDSLLVRQASLPPMTAVGGLCCRELSTSSQLSTKQQMEGFTVK
DKRPPRARVAKEKRKQYLAQRQASFDAEQKKAASLGLDWGIRSALVLERL
PVIVEEYADWQRDFWDLQARQAQYGAKFPEEMGFKYDDEQPLTMEQILER
SPVPLAPRRTPADESNDRTTLDRALDERLMLIVKPKPGAEWRLPESAWQG
GETIRQAAERTAQQVLRKTATWRGQPDDVAQLHFVGNCPAGWFWRAGDEE
QQVQSGSFGDKVFINRVQLICGQPTIVESEAAEHLWVTKHEIGEYLGDAV
GVYLKHLI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040008MRPL46
IPR015797NUDIX_hydrolase-like_dom_sf