mRNA_C-linearis_contig10.597.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.597.1
Unique NamemRNA_C-linearis_contig10.597.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 3.810e-60
Identity = 115/140 (82.14%), Postives = 118/140 (84.29%), Query Frame = 1 
Query:   19 MTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEG---------KEEQLRELLLKKEDRLSRIEQLRANNAPAGS 411
            MTSLSAMSEGDEEEGGGDHDAREAAD IPAADEIRAVQDDIRGVERK EDAE+ETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ               +E  L ELLLKKEDR SRIEQLRANNAPA +
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPAAN 140
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BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 2.770e-57
Identity = 113/153 (73.86%), Postives = 116/153 (75.82%), Query Frame = 1 
Query:    1 FYPVRGMTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEEQLR------------------ELLLKKEDRLSRIEQLRANNAPA 405
            FYPVRGMT LSAMSEGDEEEGGGDH AREAAD +PAADEIRAVQD+IRGVERKIEDAEEETAEVVKKIDDIEAAIAGG+RYLGMTDPEALLKQL    EQLRR                           ELLLK EDRLSR EQ RANNAPA
Sbjct:    2 FYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL----EQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 4.340e-52
Identity = 108/144 (75.00%), Postives = 110/144 (76.39%), Query Frame = 1 
Query:   19 MTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIED-------AEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEEQLRE-------LLLKKEDRLSRIEQLRANNAPAG 408
            MTS SAMSEGDEEEGGGDHDAREAADG PAADEIRAVQ                   AEEETAEVVKKID IEAAIAGGS+YLGMTDPEALLKQLGRKEEQLRRKEGKE            +LLKKEDRLSRIEQLRANNAPAG
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAG 144
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BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 9.570e-33
Identity = 73/102 (71.57%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 FYPVRGMTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 306
            FYPV GMTSLSAMSEG EEEGGGDH AREAADG PAADEIRAVQ                        D IEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR
Sbjct:   70 FYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 171
[Close]
BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 8.520e-30
Identity = 77/137 (56.20%), Postives = 85/137 (62.04%), Query Frame = 1 
Query:    4 YPVRGMTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIEDAEEETAEVVKKIDDIEAA-IAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEEQLRELLLKKEDRLSRIEQLRANNAPAGS 411
            YPVRG+TSLSA+SEG+EE+GGGDHD REAA G PAADEIRAVQ                      KIDD+EAA IAGGS YLGMTDPEALLK+  R                  +L KE RL  IEQ RANNAPAG+
Sbjct:    3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKEKERLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAGT 139
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8Q1_ECTSI3.810e-6082.14Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI2.770e-5773.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI4.340e-5275.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI9.570e-3371.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI8.520e-3056.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2778180..2779024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size465
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.597.1prot_C-linearis_contig10.597.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2778180..2779006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.4694896-CDS-C-linearis_contig10:2778179..27782381622927344.4694896-CDS-C-linearis_contig10:2778179..2778238Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2778180..2778238 -
1690879640.6647713-CDS-C-linearis_contig10:2778179..27782381690879640.6647713-CDS-C-linearis_contig10:2778179..2778238Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2778180..2778238 -
1622927344.4780307-CDS-C-linearis_contig10:2778618..27790061622927344.4780307-CDS-C-linearis_contig10:2778618..2779006Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2778619..2779006 -
1690879640.6782014-CDS-C-linearis_contig10:2778618..27790061690879640.6782014-CDS-C-linearis_contig10:2778618..2779006Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2778619..2779006 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.4877276-UTR-C-linearis_contig10:2779006..27790241622927344.4877276-UTR-C-linearis_contig10:2779006..2779024Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2779007..2779024 -
1690879640.6876178-UTR-C-linearis_contig10:2779006..27790241690879640.6876178-UTR-C-linearis_contig10:2779006..2779024Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2779007..2779024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.597.1

>prot_C-linearis_contig10.597.1 ID=prot_C-linearis_contig10.597.1|Name=mRNA_C-linearis_contig10.597.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=149bp
MTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIED
AEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEG
KEEQLRELLLKKEDRLSRIEQLRANNAPAGSHRRGGVDPLLRCLPVIF*
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mRNA from alignment at C-linearis_contig10:2778180..2779024-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.597.1 ID=mRNA_C-linearis_contig10.597.1|Name=mRNA_C-linearis_contig10.597.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=845bp|location=Sequence derived from alignment at C-linearis_contig10:2778180..2779024- (Chordaria linearis ClinC8C monoicous)
TTTTACCCGGTGCGAGGGATGACGAGCTTGAGCGCGATGAGCGAGGGCGA
CGAGGAGGAGGGGGGCGGGGATCATGATGCGCGAGAAGCTGCTGATGGCA
TTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGACATCCGTGGTGTA
GAGCGCAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAAGAA
GATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAGGTACCTCGGAA
TGACCGACCCCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGAGGAGCAG
CTACGCAGGAAGGAGGGGAAGGAGGAGCAACTCCGCGAGCTCCTTTTGAA
GAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCAACAACGCCC
CCGCAGGTATAGAAGCGTCCTATTATATGTGGAGATCCACAACAGTGTAC
AGATTAGGGGATGCAGGTCGCCCGCAATAAAAGCAGACCATTTGAAACAA
TTCTAGGAGTTCCTTGTGGCCGGTACATTTGTAGTGCTGTCGTTTTGCAC
GGGCAATTCGCCTCGTCTTCAAAGCAATCTGCGGACGTTATGGTAGATCC
ACGCTCCTCAGCAACTACAGTACGTGCGACCTTTTCTTGTCCCACCTGGC
TGCAGAACGCTGTGACAAGTCCTCCTCTGCTACACAAGGAGTATTACTCC
TACATTATTTCATCCCATTATTGGATTTTGTTGTCTGCCCCACTGGCCCC
CATCCTCTACCTCGATTAGCTAGACGACCCAACCAGGGTCACACAGGAGG
GGGGGTGTGGACCCCCTCCTGCGGTGCCTGCCTGTAATTTTTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2778180..2779024-

>mRNA_C-linearis_contig10.597.1 ID=mRNA_C-linearis_contig10.597.1|Name=mRNA_C-linearis_contig10.597.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at C-linearis_contig10:2778180..2779024- (Chordaria linearis ClinC8C monoicous)
ATGACGAGCTTGAGCGCGATGAGCGAGGGCGACGAGGAGGAGGGGGGCGG
GGATCATGATGCGCGAGAAGCTGCTGATGGCATTCCGGCGGCGGACGAGA
TCCGTGCGGTCCAGGATGACATCCGTGGTGTAGAGCGCAAGATCGAGGAT
GCAGAGGAGGAGACGGCAGAGGTTGTCAAGAAGATTGATGATATTGAGGC
TGCTATTGCTGGGGGCTCCAGGTACCTCGGAATGACCGACCCCGAAGCCC
TCTTGAAGCAACTAGGCAGGAAGGAGGAGCAGCTACGCAGGAAGGAGGGG
AAGGAGGAGCAACTCCGCGAGCTCCTTTTGAAGAAGGAGGACCGGCTCTC
CAGGATTGAGCAGCTCCGTGCCAACAACGCCCCCGCAGATGACGAGCTTG
AGCGCGATGAGCGAGGGCGACGAGGAGGAGGGGGGCGGGGATCATGATGC
GCGAGAAGCTGCTGATGGCATTCCGGCGGCGGACGAGATCCGTGCGGTCC
AGGATGACATCCGTGGTGTAGAGCGCAAGATCGAGGATGCAGAGGAGGAG
ACGGCAGAGGTTGTCAAGAAGATTGATGATATTGAGGCTGCTATTGCTGG
GGGCTCCAGGTACCTCGGAATGACCGACCCCGAAGCCCTCTTGAAGCAAC
TAGGCAGGAAGGAGGAGCAGCTACGCAGGAAGGAGGGGAAGGAGGAGCAA
CTCCGCGAGCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCA
GCTCCGTGCCAACAACGCCCCCGCAGGGTCACACAGGAGGGGGGGTGTGG
ACCCCCTCCTGCGGTGCCTGCCTGTAATTTTTTGAGGTCACACAGGAGGG
GGGGTGTGGACCCCCTCCTGCGGTGCCTGCCTGTAATTTTTTGA
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