mRNA_C-linearis_contig10.597.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI) HSP 1 Score: 194 bits (493), Expect = 3.810e-60 Identity = 115/140 (82.14%), Postives = 118/140 (84.29%), Query Frame = 1 Query: 19 MTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEG---------KEEQLRELLLKKEDRLSRIEQLRANNAPAGS 411 MTSLSAMSEGDEEEGGGDHDAREAAD IPAADEIRAVQDDIRGVERK EDAE+ETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ +E L ELLLKKEDR SRIEQLRANNAPA + Sbjct: 1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPAAN 140
BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI) HSP 1 Score: 185 bits (469), Expect = 2.770e-57 Identity = 113/153 (73.86%), Postives = 116/153 (75.82%), Query Frame = 1 Query: 1 FYPVRGMTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEEQLR------------------ELLLKKEDRLSRIEQLRANNAPA 405 FYPVRGMT LSAMSEGDEEEGGGDH AREAAD +PAADEIRAVQD+IRGVERKIEDAEEETAEVVKKIDDIEAAIAGG+RYLGMTDPEALLKQL EQLRR ELLLK EDRLSR EQ RANNAPA Sbjct: 2 FYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL----EQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI) HSP 1 Score: 171 bits (434), Expect = 4.340e-52 Identity = 108/144 (75.00%), Postives = 110/144 (76.39%), Query Frame = 1 Query: 19 MTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIED-------AEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEEQLRE-------LLLKKEDRLSRIEQLRANNAPAG 408 MTS SAMSEGDEEEGGGDHDAREAADG PAADEIRAVQ AEEETAEVVKKID IEAAIAGGS+YLGMTDPEALLKQLGRKEEQLRRKEGKE +LLKKEDRLSRIEQLRANNAPAG Sbjct: 1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAG 144
BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI) HSP 1 Score: 124 bits (310), Expect = 9.570e-33 Identity = 73/102 (71.57%), Postives = 73/102 (71.57%), Query Frame = 1 Query: 1 FYPVRGMTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 306 FYPV GMTSLSAMSEG EEEGGGDH AREAADG PAADEIRAVQ D IEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR Sbjct: 70 FYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 171
BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI) HSP 1 Score: 115 bits (287), Expect = 8.520e-30 Identity = 77/137 (56.20%), Postives = 85/137 (62.04%), Query Frame = 1 Query: 4 YPVRGMTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIEDAEEETAEVVKKIDDIEAA-IAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEEQLRELLLKKEDRLSRIEQLRANNAPAGS 411 YPVRG+TSLSA+SEG+EE+GGGDHD REAA G PAADEIRAVQ KIDD+EAA IAGGS YLGMTDPEALLK+ R +L KE RL IEQ RANNAPAG+ Sbjct: 3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKEKERLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAGT 139 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.597.1 >prot_C-linearis_contig10.597.1 ID=prot_C-linearis_contig10.597.1|Name=mRNA_C-linearis_contig10.597.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=149bp MTSLSAMSEGDEEEGGGDHDAREAADGIPAADEIRAVQDDIRGVERKIEDback to top mRNA from alignment at C-linearis_contig10:2778180..2779024- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.597.1 ID=mRNA_C-linearis_contig10.597.1|Name=mRNA_C-linearis_contig10.597.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=845bp|location=Sequence derived from alignment at C-linearis_contig10:2778180..2779024- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2778180..2779024- >mRNA_C-linearis_contig10.597.1 ID=mRNA_C-linearis_contig10.597.1|Name=mRNA_C-linearis_contig10.597.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at C-linearis_contig10:2778180..2779024- (Chordaria linearis ClinC8C monoicous)back to top |