mRNA_C-linearis_contig10.594.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.594.1
Unique NamemRNA_C-linearis_contig10.594.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.594.1 vs. uniprot
Match: D7FUC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC6_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 9.650e-5
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   19 SVEGGECCHIKDPRMYKGMVVMLVILRPLMREHLE 123
            S++G  C H+K P M++ + V+LV+LRPLMREHL+
Sbjct:  420 SIQGTACVHLKRPDMHRWLAVLLVLLRPLMREHLQ 454
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUC6_ECTSI9.650e-554.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2740938..2741135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size199
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.396114-CDS-C-linearis_contig10:2740937..27411351622927344.396114-CDS-C-linearis_contig10:2740937..2741135Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2740938..2741135 +
1690879640.6297581-CDS-C-linearis_contig10:2740937..27411351690879640.6297581-CDS-C-linearis_contig10:2740937..2741135Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2740938..2741135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.594.1prot_C-linearis_contig10.594.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2740938..2741135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.594.1

>prot_C-linearis_contig10.594.1 ID=prot_C-linearis_contig10.594.1|Name=mRNA_C-linearis_contig10.594.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=66bp
VDGLTDSVEGGECCHIKDPRMYKGMVVMLVILRPLMREHLEDLHRERLEK
NAGGEVQVDELKLCDE
back to top

mRNA from alignment at C-linearis_contig10:2740938..2741135+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.594.1 ID=mRNA_C-linearis_contig10.594.1|Name=mRNA_C-linearis_contig10.594.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at C-linearis_contig10:2740938..2741135+ (Chordaria linearis ClinC8C monoicous)
GTCGATGGCTTGACCGATTCGGTGGAGGGCGGCGAGTGTTGCCACATCAA
GGACCCGCGGATGTACAAGGGGATGGTGGTGATGCTCGTGATTCTTCGTC
CCCTGATGCGCGAGCACCTCGAGGATCTACACCGGGAACGTCTTGAGAAG
AATGCCGGTGGCGAAGTCCAAGTCGACGAGCTTAAGCTATGTGACGAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:2740938..2741135+

>mRNA_C-linearis_contig10.594.1 ID=mRNA_C-linearis_contig10.594.1|Name=mRNA_C-linearis_contig10.594.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at C-linearis_contig10:2740938..2741135+ (Chordaria linearis ClinC8C monoicous)
GTCGATGGCTTGACCGATTCGGTGGAGGGCGGCGAGTGTTGCCACATCAA
GGACCCGCGGATGTACAAGGGGATGGTGGTGATGCTCGTGATTCTTCGTC
CCCTGATGCGCGAGCACCTCGAGGATCTACACCGGGAACGTCTTGAGAAG
AATGCCGGTGGCGAAGTCCAAGTCGACGAGCTTAAGCTATGTGACGAGGT
CGATGGCTTGACCGATTCGGTGGAGGGCGGCGAGTGTTGCCACATCAAGG
ACCCGCGGATGTACAAGGGGATGGTGGTGATGCTCGTGATTCTTCGTCCC
CTGATGCGCGAGCACCTCGAGGATCTACACCGGGAACGTCTTGAGAAGAA
TGCCGGTGGCGAAGTCCAAGTCGACGAGCTTAAGCTATGTGACGAG
back to top