Homology
BLAST of mRNA_C-linearis_contig10.594.1 vs. uniprot
Match:
D7FUC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC6_ECTSI)
HSP 1 Score: 48.1 bits (113), Expect = 9.650e-5
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 1
Query: 19 SVEGGECCHIKDPRMYKGMVVMLVILRPLMREHLE 123
S++G C H+K P M++ + V+LV+LRPLMREHL+
Sbjct: 420 SIQGTACVHLKRPDMHRWLAVLLVLLRPLMREHLQ 454
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.594.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 9.65e-5 / Id = 54.29 Sequence D7FUC6_ECTSI
Match Name E-value Identity Description
D7FUC6_ECTSI 9.650e-5 54.29 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 199 Cds size 198 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927344.396114-CDS-C-linearis_contig10:2740937..2741135 1622927344.396114-CDS-C-linearis_contig10:2740937..2741135 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2740938..2741135 + 1690879640.6297581-CDS-C-linearis_contig10:2740937..2741135 1690879640.6297581-CDS-C-linearis_contig10:2740937..2741135 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2740938..2741135 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.594.1
>prot_C-linearis_contig10.594.1 ID=prot_C-linearis_contig10.594.1|Name=mRNA_C-linearis_contig10.594.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=66bp
VDGLTDSVEGGECCHIKDPRMYKGMVVMLVILRPLMREHLEDLHRERLEK back to top mRNA from alignment at C-linearis_contig10:2740938..2741135+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.594.1 ID=mRNA_C-linearis_contig10.594.1|Name=mRNA_C-linearis_contig10.594.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at C-linearis_contig10:2740938..2741135+ (Chordaria linearis ClinC8C monoicous)GTCGATGGCTTGACCGATTCGGTGGAGGGCGGCGAGTGTTGCCACATCAA
GGACCCGCGGATGTACAAGGGGATGGTGGTGATGCTCGTGATTCTTCGTC
CCCTGATGCGCGAGCACCTCGAGGATCTACACCGGGAACGTCTTGAGAAG
AATGCCGGTGGCGAAGTCCAAGTCGACGAGCTTAAGCTATGTGACGAG back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2740938..2741135+
>mRNA_C-linearis_contig10.594.1 ID=mRNA_C-linearis_contig10.594.1|Name=mRNA_C-linearis_contig10.594.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at C-linearis_contig10:2740938..2741135+ (Chordaria linearis ClinC8C monoicous) back to top