mRNA_C-linearis_contig10.590.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.590.1
Unique NamemRNA_C-linearis_contig10.590.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.590.1 vs. uniprot
Match: D7G8P8_ECTSI (HYPK_UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.350e-22
Identity = 63/98 (64.29%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   67 MADQETANAGLEKVTDYVDEQELNADDTADALKNLAANPG-----ASTEPSTESTQLKISAADVEQIQEELECSADEAKAGLIEASGDVVQALRHLLR 345
            MA+ E ANAGLEKVTDY  E+ELN +DTA+AL +LA N       AS EPSTEST LKISAAD+E ++EELE S +EAKA L++  GDVVQALR LL+
Sbjct:    1 MAEAEEANAGLEKVTDYHAEKELNENDTANALSSLANNSSPTLIPASAEPSTEST-LKISAADIEVLKEELEVSTEEAKAALLKRDGDVVQALRLLLQ 97
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8P8_ECTSI2.350e-2264.29HYPK_UBA domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2719305..2723982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-22_002540.1
Exons2
Model size1081
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.590.1prot_C-linearis_contig10.590.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2720038..2723919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.0421627-UTR-C-linearis_contig10:2719304..27200371622927344.0421627-UTR-C-linearis_contig10:2719304..2720037Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2719305..2720037 -
1690879640.3415499-UTR-C-linearis_contig10:2719304..27200371690879640.3415499-UTR-C-linearis_contig10:2719304..2720037Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2719305..2720037 -
1622927344.072101-UTR-C-linearis_contig10:2723919..27239821622927344.072101-UTR-C-linearis_contig10:2723919..2723982Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2723920..2723982 -
1690879640.3758225-UTR-C-linearis_contig10:2723919..27239821690879640.3758225-UTR-C-linearis_contig10:2723919..2723982Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2723920..2723982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927344.0535858-CDS-C-linearis_contig10:2720037..27201941622927344.0535858-CDS-C-linearis_contig10:2720037..2720194Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2720038..2720194 -
1690879640.3540611-CDS-C-linearis_contig10:2720037..27201941690879640.3540611-CDS-C-linearis_contig10:2720037..2720194Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2720038..2720194 -
1622927344.0634751-CDS-C-linearis_contig10:2723791..27239191622927344.0634751-CDS-C-linearis_contig10:2723791..2723919Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2723792..2723919 -
1690879640.3616402-CDS-C-linearis_contig10:2723791..27239191690879640.3616402-CDS-C-linearis_contig10:2723791..2723919Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2723792..2723919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.590.1

>prot_C-linearis_contig10.590.1 ID=prot_C-linearis_contig10.590.1|Name=mRNA_C-linearis_contig10.590.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=95bp
MMADQETANAGLEKVTDYVDEQELNADDTADALKNLAANPGASTEPSTES
TQLKISAADVEQIQEELECSADEAKAGLIEASGDVVQALRHLLR*
back to top

mRNA from alignment at C-linearis_contig10:2719305..2723982-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.590.1 ID=mRNA_C-linearis_contig10.590.1|Name=mRNA_C-linearis_contig10.590.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4678bp|location=Sequence derived from alignment at C-linearis_contig10:2719305..2723982- (Chordaria linearis ClinC8C monoicous)
TCAACTGCTGTGCTGTTGTGCTTGTGCCAACAGCACGGGAGCACGGGGCG
TATTACTCTGTCTATGATGGCGGATCAGGAGACAGCAAATGCTGGGCTTG
AAAAAGTGACGGACTATGTGGACGAACAGGAACTCAATGCCGACGATACG
GCTGATGCTTTGAAGAATTTGGCTGCAAATCCGGGAGCAAGGTACTATGA
CATCATCTACCTTGTGTGTGTGTGTGTGTTTTCGTCCCATTTATTTTGGC
GACAGTCCCTTTCCGATCAAGGCGAGACGTGTACTACAAGTTGCGGTGTA
TTTAGAGTACTACACTTGTTCAGTGTATTTTTCTGTACAATTAGAACCAA
CCGGGGTCACACAGGAGGGGGTAAACACTGGGGCTTTTTTCTTCTTTTTC
TGTTTCTTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTGGATTTTA
TCGCGAGAAGGGTGCAGCCATCCCTTCCCTCGTCAACGTGCTAAGTCGAA
GTTTGGTACTCACGAGCTTTTTCAGCTATGTTATCGCTTTCACCTGCAAA
GTCGCAAAAGAAACACCTTTGCTTGGAATTGAACTCCAGACTTTGCTGCT
ATGTAGTGGGGTCGAGGTTAAGCCACAAGACTAGTCCACGGGGCGACCGG
CTCGCCTTGTACGAGCGTACAATTGTGTGTGACAGAGTCAACATATCGGG
TCGCTATTTGGGTGCATAGGATGTTCATGATTGCATCCTTTATACAGAGT
AAACACGCCAAATTCAGCCTTTATCGCCAGTCTTAGCATCGTGAACACAA
TCTCAATACTAATGGAATTTTCATCATTCATGAACGAGAAGAGACGTACA
AAGTACAATCACCAGAGTGTACGGACATTTTCGAACGCAACACGGCGTGG
ATTGAGAGCCGCCGATCATTGTTATGTTGTGTAAACAAAGAGGCAGTGCT
CTCCTTCCTTCCGCTACATGCGACCTCTCTCTCTCTTGTTCTGTACGGTG
CCTAACCACCCATTACACCGCGCGGCAAATGCAGTAAGGTCGCCGTTGGA
AATATTGCATGTTTCCCATCTTTCAATGTTGTTGTTGTTGTTGTTGTCTT
CACATTAAAGACCATCCCGGTCTCGTCTCTGTCCAGTACCTCCTTCTGTC
TCAACCTCTCCGTACTAATCCATCACTTGACGCGGCCAATTTCCGTGGTC
ACAAGCTAACTTACCTAAAAAGGTATAATGAAAAATAAAACGGATCCCAA
GGGTCAGCAGAGCGATAAAATACGAGAAAAATAAAAGAATCAGGAAACAA
ATAAGAGTGGAGCGCCAACATCACCAACCAGGGGTATAACCTCCCGATTC
TATCTTGCTACATGGTAGTCGACAGCAGTACATACACATGTAGGACACAT
GTAGTCTCAGAAGTGGACACGGAGAACAACCGAAAACACCCACAAATGAC
ATGCAGACTATCAGCGTTGCAAAAATATGGACACACGCGAAAAGCGTTTT
TTATCGGCGTCTTTCGCCGCCACGATAAGTGTGACACACACAGCCAGCAC
AGCGAGGAGAGAGGCCGAAAGCGGTGCAGACGCCGATGGTATGCGAGCGC
GAGTGGATCGGCACATGTTAGTGGACAGCAGTACATACACATTACATGTA
AGCTCAGAAGTGGGCAGGGAGAACAACAACCGAACACACACACACAAAAA
TGACACGTAGACTATCAGCATTGCAAAAATCTGCATAAACCTTTTAAAAC
CTTTTTTATTGTAAATTTTACGAGAGCGCACCATTTCATTTTCTCTCGAG
CGATCACAGAGCAGCGTTGGCCCTCTCTAGAGCGCCGTCGCTGGCAGTGT
TGTGTAGTAGCACTTCGTAGGGAAAATTCATTGCGCCGTGCACTCAAGCA
CTTCGTAGGACGTCGCATTAATGTGGGGCTGTGTCGTCGCGTAAGAAGTG
CTCAGCGTCTATGTCTTGGCACGAACGACGAACTGACAGCATTGAAATTG
GTGGACGCCGTCGCTGGCAATAGCGGTTGCGCATCTCGCACACAGTTCTG
AGGTTAATGGTGACACTTAGAGGTTTCACTGCTATTCTGCGTTTAATGGT
TTGCACTCGTGCGGGTTCAGTGTTGGTGTGGAGTTCATTGTAGTTTCGGG
TGCTGTGGAGTTCATAGTAGTTTTGGGTGCTCGCGCACTATTGTGGGTCC
TATAACAGCATTCTGTGTGCTTTCAACGACTATGGAATGCTCGCATACAT
GGCGTTATCAAATGATGAAGTTAAAGTTTTATCGCATGAGGTATATATGA
CGCTGATCACAGAGGAGGCGTTATCACAAGCCTCGATCACAAGCCTCGGG
AAATTAACATCTAGACAGACTGCAACTAACTTCGCGCCACGACGCAGCAT
ATTTATGATACTACACTACAACAACGACCTCAAATTTCAACTCTCAAATT
TCCTAAACGGCACGACACTCTACCAATGGACACGTATCTCGGAATCGATC
CAATGAGCGTGGCGGCGTCAGCCGCCGAAAACCTCGTACACGCACGAAAG
GAGAGCGTTTTTTATCGGCGGCTTCCGCCGCCAAGATAAGTGTGACACAC
ACAAAGCCAGCACAGCGAGGAGGGAGACCGAAAGCGGTGCAGACGCCGAT
GGTATGAGAGCGCGAGTGGATCGGTCGATATGCGAGTGCGAGAAAAGATC
CCGATTTCCAGTTCGGTCAAACAGACAGAGACAACAACAGAGTAGCAGCA
CTATAATAGACTTTTGAGCAGAGAGACGAGAAAGCCAATAACAGAGAGAG
ACAGAGAGACAGAGAGAGATGGACAGACCGACAGACAGACCGACTGACAG
CTAAACGAAACACAAACAAACACAGAGAGCACACATAGTCGACACACACA
CACACACAGAGAGAGGGAAATATTCGATGTTCGGAAGAGACCGGGAGAGA
GCGGTTGAAACGTACACAAGTGTTGCGTGAAGCCATTCTCTGTGTATGTA
TGGAGAGTGGGGTAGTGTGCCTGTGGGGCGACAGGACCACCGCGCAAGCT
ATAACTGTTCCGCCTCATTCCGCCTGCGCAATGCATGTAAAAACTAATCC
GAGTGCACTAAAATATTTTTCCGTGATGTGTCCTTGAATTCGTGTTCTTG
AATTCCGTTCCGAAAGAGATGCGTGATTCGAAAGGCACACAGACAGAAAT
AATCTGGATAGAAAAAAGGTTGTAGACACGGAATGGAGAGCGCGTAAGAC
CCCTCTGAGCGCTGAGTTTTCGTTGGTTTGCGAAAAGCGCGAAAGACAAC
ACAGGTAGGAGATAGATCTCGATTTCCGGGTGGTTCGAACAGAGTTCGAA
CGGGAGAGCGGGAGAAGCACATAAATAGCCAGAAACAGCAGTAGATGGGA
GACACTCGTGATCCACCCAGCAGAGTTAAGACGGAGAGAATGAGAGACTT
AAGAGAGACGAAGAGAGGCGCAGACAGCACCAGGCCCGGAGCGGAGAGCA
CCGTGTGGCGCAACTTTGACCGGAAAAAATGGCGCAACGACGCTACAATC
ACGCAATCGCCGAATTCAGAAATGCTGCCCGCTCGTGCGCCCAAGCCGCT
CGGCCGCACTCTGAAACCAAGTGAATAAGCGTGCTGGCCTGTGAGAGCCC
GAGAGCACGCCTCCGAGCGCGGGGAAAGTTTTCGGAAATGGAGCGATTCT
AGCGGAAAGATAAATGACATAACTGTTCATAACCGGTTGATCGCGTGCCG
TCCGATTGCTGCTGTCGGTTCATCTTGCTTGCCCACAGCACGGAACCAAG
CACGGAATCAACGCAACTCAAGATTTCTGCCGCGGATGTCGAGCAGATAC
AAGAAGAGTTGGAGTGTTCTGCGGACGAAGCAAAAGCTGGGTTGATAGAG
GCATCCGGTGATGTGGTGCAAGCTTTGCGGCACCTGTTACGCTGAAACGA
GCCGTTTTTTCTACCCTCGTGGAGTCGTGGAGGTTTTGTGTTATGGTATT
GGAGGTAGCCATGTAGTAGGGCGTATGAAGGAGTTTGAATAGCCCTAGGT
ATGTATAGGTTCCTGGCTGCGGAGACCCTCACGCCCACGGGCACCTCTGT
ATGTTGTTTTGAAGATCTTGGTGCTGAGAGGAACTACATAGTAAAATGGA
GAACGAAACAGAACGGAGACCTCGGAGAACCTGTTACTGCTGTGGAGACA
CCTGTCACAGAGTACCCCTCCGTGGATAGTATTGGTTGTGTACCCGGATA
CAAATACATTCGCTGGCGCCCCTGTGTGTGTGCGTGTGTGGCTTTTAGCG
CGTGCCGGTGCCGTCGCTTATGGCAGGAGTATGTGAGGGTCTACCGCCAG
GTTTTGGACGACACTCTGCAATCCTAGGGGGTGAGAAATGAAGGTGGACT
CAATAGTATCGTATTGTCTATATTCCAGCTGGCCGTTCTCGAAGTTGTTC
TCTTTTCGCTGAAAAGTGGGAGGTCGATGTATTGTGCTGCTTTGACTCTT
GCGCCGGTGGTTCTGCGTAGTAAAAAGTACACCCAGTTTTTGTCGAACTG
CGGAGCACTCAGTTGAAGGGTGGGTGCTTTTTGTCTCCTCAAAACACACG
GCAGGTACACAGAGCGCGTGGAGTCAGGTGGAAAAGGCAAAATTACAAAG
ACAACCGTCCTGCTGCAGAGAAGCACAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:2719305..2723982-

>mRNA_C-linearis_contig10.590.1 ID=mRNA_C-linearis_contig10.590.1|Name=mRNA_C-linearis_contig10.590.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at C-linearis_contig10:2719305..2723982- (Chordaria linearis ClinC8C monoicous)
ATGATGGCGGATCAGGAGACAGCAAATGCTGGGCTTGAAAAAGTGACGGA
CTATGTGGACGAACAGGAACTCAATGCCGACGATACGGCTGATGCTTTGA
AGAATTTGGCTGCAAATCCGGGAGCAAGATGATGGCGGATCAGGAGACAG
CAAATGCTGGGCTTGAAAAAGTGACGGACTATGTGGACGAACAGGAACTC
AATGCCGACGATACGGCTGATGCTTTGAAGAATTTGGCTGCAAATCCGGG
AGCAAGCACGGAACCAAGCACGGAATCAACGCAACTCAAGATTTCTGCCG
CGGATGTCGAGCAGATACAAGAAGAGTTGGAGTGTTCTGCGGACGAAGCA
AAAGCTGGGTTGATAGAGGCATCCGGTGATGTGGTGCAAGCTTTGCGGCA
CCTGTTACGCTGACACGGAACCAAGCACGGAATCAACGCAACTCAAGATT
TCTGCCGCGGATGTCGAGCAGATACAAGAAGAGTTGGAGTGTTCTGCGGA
CGAAGCAAAAGCTGGGTTGATAGAGGCATCCGGTGATGTGGTGCAAGCTT
TGCGGCACCTGTTACGCTGA
back to top