Homology
BLAST of mRNA_C-linearis_contig10.590.1 vs. uniprot
Match:
D7G8P8_ECTSI (HYPK_UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P8_ECTSI)
HSP 1 Score: 99.8 bits (247), Expect = 2.350e-22
Identity = 63/98 (64.29%), Postives = 75/98 (76.53%), Query Frame = 1
Query: 67 MADQETANAGLEKVTDYVDEQELNADDTADALKNLAANPG-----ASTEPSTESTQLKISAADVEQIQEELECSADEAKAGLIEASGDVVQALRHLLR 345
MA+ E ANAGLEKVTDY E+ELN +DTA+AL +LA N AS EPSTEST LKISAAD+E ++EELE S +EAKA L++ GDVVQALR LL+
Sbjct: 1 MAEAEEANAGLEKVTDYHAEKELNENDTANALSSLANNSSPTLIPASAEPSTEST-LKISAADIEVLKEELEVSTEEAKAALLKRDGDVVQALRLLLQ 97
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.590.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.35e-22 / Id = 64.29 Sequence D7G8P8_ECTSI
Match Name E-value Identity Description
D7G8P8_ECTSI 2.350e-22 64.29 HYPK_UBA domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description UBA-like Ec32 ortholog Ec-22_002540.1 Exons 2 Model size 1081 Cds size 285 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927344.0421627-UTR-C-linearis_contig10:2719304..2720037 1622927344.0421627-UTR-C-linearis_contig10:2719304..2720037 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 2719305..2720037 - 1690879640.3415499-UTR-C-linearis_contig10:2719304..2720037 1690879640.3415499-UTR-C-linearis_contig10:2719304..2720037 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 2719305..2720037 - 1622927344.072101-UTR-C-linearis_contig10:2723919..2723982 1622927344.072101-UTR-C-linearis_contig10:2723919..2723982 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 2723920..2723982 - 1690879640.3758225-UTR-C-linearis_contig10:2723919..2723982 1690879640.3758225-UTR-C-linearis_contig10:2723919..2723982 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 2723920..2723982 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927344.0535858-CDS-C-linearis_contig10:2720037..2720194 1622927344.0535858-CDS-C-linearis_contig10:2720037..2720194 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2720038..2720194 - 1690879640.3540611-CDS-C-linearis_contig10:2720037..2720194 1690879640.3540611-CDS-C-linearis_contig10:2720037..2720194 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2720038..2720194 - 1622927344.0634751-CDS-C-linearis_contig10:2723791..2723919 1622927344.0634751-CDS-C-linearis_contig10:2723791..2723919 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2723792..2723919 - 1690879640.3616402-CDS-C-linearis_contig10:2723791..2723919 1690879640.3616402-CDS-C-linearis_contig10:2723791..2723919 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 2723792..2723919 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.590.1
>prot_C-linearis_contig10.590.1 ID=prot_C-linearis_contig10.590.1|Name=mRNA_C-linearis_contig10.590.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=95bp
MMADQETANAGLEKVTDYVDEQELNADDTADALKNLAANPGASTEPSTES back to top mRNA from alignment at C-linearis_contig10:2719305..2723982-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.590.1 ID=mRNA_C-linearis_contig10.590.1|Name=mRNA_C-linearis_contig10.590.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4678bp|location=Sequence derived from alignment at C-linearis_contig10:2719305..2723982- (Chordaria linearis ClinC8C monoicous)TCAACTGCTGTGCTGTTGTGCTTGTGCCAACAGCACGGGAGCACGGGGCG
TATTACTCTGTCT ATGATGGCGGATCAGGAGACAGCAAATGCTGGGCTTG
AAAAAGTGACGGACTATGTGGACGAACAGGAACTCAATGCCGACGATACG
GCTGATGCTTTGAAGAATTTGGCTGCAAATCCGGGAGCAAG GTACTATGA
CATCATCTACCTTGTGTGTGTGTGTGTGTTTTCGTCCCATTTATTTTGGC
GACAGTCCCTTTCCGATCAAGGCGAGACGTGTACTACAAGTTGCGGTGTA
TTTAGAGTACTACACTTGTTCAGTGTATTTTTCTGTACAATTAGAACCAA
CCGGGGTCACACAGGAGGGGGTAAACACTGGGGCTTTTTTCTTCTTTTTC
TGTTTCTTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTGGATTTTA
TCGCGAGAAGGGTGCAGCCATCCCTTCCCTCGTCAACGTGCTAAGTCGAA
GTTTGGTACTCACGAGCTTTTTCAGCTATGTTATCGCTTTCACCTGCAAA
GTCGCAAAAGAAACACCTTTGCTTGGAATTGAACTCCAGACTTTGCTGCT
ATGTAGTGGGGTCGAGGTTAAGCCACAAGACTAGTCCACGGGGCGACCGG
CTCGCCTTGTACGAGCGTACAATTGTGTGTGACAGAGTCAACATATCGGG
TCGCTATTTGGGTGCATAGGATGTTCATGATTGCATCCTTTATACAGAGT
AAACACGCCAAATTCAGCCTTTATCGCCAGTCTTAGCATCGTGAACACAA
TCTCAATACTAATGGAATTTTCATCATTCATGAACGAGAAGAGACGTACA
AAGTACAATCACCAGAGTGTACGGACATTTTCGAACGCAACACGGCGTGG
ATTGAGAGCCGCCGATCATTGTTATGTTGTGTAAACAAAGAGGCAGTGCT
CTCCTTCCTTCCGCTACATGCGACCTCTCTCTCTCTTGTTCTGTACGGTG
CCTAACCACCCATTACACCGCGCGGCAAATGCAGTAAGGTCGCCGTTGGA
AATATTGCATGTTTCCCATCTTTCAATGTTGTTGTTGTTGTTGTTGTCTT
CACATTAAAGACCATCCCGGTCTCGTCTCTGTCCAGTACCTCCTTCTGTC
TCAACCTCTCCGTACTAATCCATCACTTGACGCGGCCAATTTCCGTGGTC
ACAAGCTAACTTACCTAAAAAGGTATAATGAAAAATAAAACGGATCCCAA
GGGTCAGCAGAGCGATAAAATACGAGAAAAATAAAAGAATCAGGAAACAA
ATAAGAGTGGAGCGCCAACATCACCAACCAGGGGTATAACCTCCCGATTC
TATCTTGCTACATGGTAGTCGACAGCAGTACATACACATGTAGGACACAT
GTAGTCTCAGAAGTGGACACGGAGAACAACCGAAAACACCCACAAATGAC
ATGCAGACTATCAGCGTTGCAAAAATATGGACACACGCGAAAAGCGTTTT
TTATCGGCGTCTTTCGCCGCCACGATAAGTGTGACACACACAGCCAGCAC
AGCGAGGAGAGAGGCCGAAAGCGGTGCAGACGCCGATGGTATGCGAGCGC
GAGTGGATCGGCACATGTTAGTGGACAGCAGTACATACACATTACATGTA
AGCTCAGAAGTGGGCAGGGAGAACAACAACCGAACACACACACACAAAAA
TGACACGTAGACTATCAGCATTGCAAAAATCTGCATAAACCTTTTAAAAC
CTTTTTTATTGTAAATTTTACGAGAGCGCACCATTTCATTTTCTCTCGAG
CGATCACAGAGCAGCGTTGGCCCTCTCTAGAGCGCCGTCGCTGGCAGTGT
TGTGTAGTAGCACTTCGTAGGGAAAATTCATTGCGCCGTGCACTCAAGCA
CTTCGTAGGACGTCGCATTAATGTGGGGCTGTGTCGTCGCGTAAGAAGTG
CTCAGCGTCTATGTCTTGGCACGAACGACGAACTGACAGCATTGAAATTG
GTGGACGCCGTCGCTGGCAATAGCGGTTGCGCATCTCGCACACAGTTCTG
AGGTTAATGGTGACACTTAGAGGTTTCACTGCTATTCTGCGTTTAATGGT
TTGCACTCGTGCGGGTTCAGTGTTGGTGTGGAGTTCATTGTAGTTTCGGG
TGCTGTGGAGTTCATAGTAGTTTTGGGTGCTCGCGCACTATTGTGGGTCC
TATAACAGCATTCTGTGTGCTTTCAACGACTATGGAATGCTCGCATACAT
GGCGTTATCAAATGATGAAGTTAAAGTTTTATCGCATGAGGTATATATGA
CGCTGATCACAGAGGAGGCGTTATCACAAGCCTCGATCACAAGCCTCGGG
AAATTAACATCTAGACAGACTGCAACTAACTTCGCGCCACGACGCAGCAT
ATTTATGATACTACACTACAACAACGACCTCAAATTTCAACTCTCAAATT
TCCTAAACGGCACGACACTCTACCAATGGACACGTATCTCGGAATCGATC
CAATGAGCGTGGCGGCGTCAGCCGCCGAAAACCTCGTACACGCACGAAAG
GAGAGCGTTTTTTATCGGCGGCTTCCGCCGCCAAGATAAGTGTGACACAC
ACAAAGCCAGCACAGCGAGGAGGGAGACCGAAAGCGGTGCAGACGCCGAT
GGTATGAGAGCGCGAGTGGATCGGTCGATATGCGAGTGCGAGAAAAGATC
CCGATTTCCAGTTCGGTCAAACAGACAGAGACAACAACAGAGTAGCAGCA
CTATAATAGACTTTTGAGCAGAGAGACGAGAAAGCCAATAACAGAGAGAG
ACAGAGAGACAGAGAGAGATGGACAGACCGACAGACAGACCGACTGACAG
CTAAACGAAACACAAACAAACACAGAGAGCACACATAGTCGACACACACA
CACACACAGAGAGAGGGAAATATTCGATGTTCGGAAGAGACCGGGAGAGA
GCGGTTGAAACGTACACAAGTGTTGCGTGAAGCCATTCTCTGTGTATGTA
TGGAGAGTGGGGTAGTGTGCCTGTGGGGCGACAGGACCACCGCGCAAGCT
ATAACTGTTCCGCCTCATTCCGCCTGCGCAATGCATGTAAAAACTAATCC
GAGTGCACTAAAATATTTTTCCGTGATGTGTCCTTGAATTCGTGTTCTTG
AATTCCGTTCCGAAAGAGATGCGTGATTCGAAAGGCACACAGACAGAAAT
AATCTGGATAGAAAAAAGGTTGTAGACACGGAATGGAGAGCGCGTAAGAC
CCCTCTGAGCGCTGAGTTTTCGTTGGTTTGCGAAAAGCGCGAAAGACAAC
ACAGGTAGGAGATAGATCTCGATTTCCGGGTGGTTCGAACAGAGTTCGAA
CGGGAGAGCGGGAGAAGCACATAAATAGCCAGAAACAGCAGTAGATGGGA
GACACTCGTGATCCACCCAGCAGAGTTAAGACGGAGAGAATGAGAGACTT
AAGAGAGACGAAGAGAGGCGCAGACAGCACCAGGCCCGGAGCGGAGAGCA
CCGTGTGGCGCAACTTTGACCGGAAAAAATGGCGCAACGACGCTACAATC
ACGCAATCGCCGAATTCAGAAATGCTGCCCGCTCGTGCGCCCAAGCCGCT
CGGCCGCACTCTGAAACCAAGTGAATAAGCGTGCTGGCCTGTGAGAGCCC
GAGAGCACGCCTCCGAGCGCGGGGAAAGTTTTCGGAAATGGAGCGATTCT
AGCGGAAAGATAAATGACATAACTGTTCATAACCGGTTGATCGCGTGCCG
TCCGATTGCTGCTGTCGGTTCATCTTGCTTGCCCACAGCACGGAACCAAG
CACGGAATCAACGCAACTCAAGATTTCTGCCGCGGATGTCGAGCAGATAC
AAGAAGAGTTGGAGTGTTCTGCGGACGAAGCAAAAGCTGGGTTGATAGAG
GCATCCGGTGATGTGGTGCAAGCTTTGCGGCACCTGTTACGCTGA AACGA
GCCGTTTTTTCTACCCTCGTGGAGTCGTGGAGGTTTTGTGTTATGGTATT
GGAGGTAGCCATGTAGTAGGGCGTATGAAGGAGTTTGAATAGCCCTAGGT
ATGTATAGGTTCCTGGCTGCGGAGACCCTCACGCCCACGGGCACCTCTGT
ATGTTGTTTTGAAGATCTTGGTGCTGAGAGGAACTACATAGTAAAATGGA
GAACGAAACAGAACGGAGACCTCGGAGAACCTGTTACTGCTGTGGAGACA
CCTGTCACAGAGTACCCCTCCGTGGATAGTATTGGTTGTGTACCCGGATA
CAAATACATTCGCTGGCGCCCCTGTGTGTGTGCGTGTGTGGCTTTTAGCG
CGTGCCGGTGCCGTCGCTTATGGCAGGAGTATGTGAGGGTCTACCGCCAG
GTTTTGGACGACACTCTGCAATCCTAGGGGGTGAGAAATGAAGGTGGACT
CAATAGTATCGTATTGTCTATATTCCAGCTGGCCGTTCTCGAAGTTGTTC
TCTTTTCGCTGAAAAGTGGGAGGTCGATGTATTGTGCTGCTTTGACTCTT
GCGCCGGTGGTTCTGCGTAGTAAAAAGTACACCCAGTTTTTGTCGAACTG
CGGAGCACTCAGTTGAAGGGTGGGTGCTTTTTGTCTCCTCAAAACACACG
GCAGGTACACAGAGCGCGTGGAGTCAGGTGGAAAAGGCAAAATTACAAAG
ACAACCGTCCTGCTGCAGAGAAGCACAC back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2719305..2723982-
>mRNA_C-linearis_contig10.590.1 ID=mRNA_C-linearis_contig10.590.1|Name=mRNA_C-linearis_contig10.590.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at C-linearis_contig10:2719305..2723982- (Chordaria linearis ClinC8C monoicous) back to top