mRNA_C-linearis_contig10.565.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.565.1
Unique NamemRNA_C-linearis_contig10.565.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.565.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.870e-35
Identity = 122/360 (33.89%), Postives = 174/360 (48.33%), Query Frame = 2 
Query:   23 GKGMSP-EQWESAKSSPEFWLPITSSLARFRRKDKFSLKTMERYLKHVSVPALCWAEIRSQAGLRHLDLSDNLTDQEYDRIIETFRLLSDNA-----HNQAQGGLSREEERRRSLALHSALPTPYLVVTNLPADVTREELFEAFRPDAEISDPVLMET------GGGSVETRRSHDDPHRXXXREQRAGGVVWLLSYRSDEEARRFRDRWDGQELRWRQPQQGLNQEQQQPERLAVRFSL-------GLNRGCIWIQPREQQQRQQHLGFQALVDFAQRRLPEDSTVRPVFAGPDRLSVSSVLLTFSSHEACRHAIEDLWQGRDPHSGNGEGGGGWRRRRGREEAGVGFVCGTECSIFFA 1045
            G   SP E WE+ K+S +FW  I + L  F R    ++ +++++L    +P  CWAE+  +AGL H    D L+  E+ RI+ET  L   NA      ++A+     E     SL+L S+ PTP+L+VT+LPADVT  E+  AFRPDA + D V+ E       GG    ++  +  P               +LS++S+E AR  RD WDG  LR              P+ + V   +       G    CIWI     +Q    L    L+D+A R  P D+ +RPVF+     SV SV LTF S  + R AIE L +G  P     +         GR + GVG++ GT CS+ F+
Sbjct:  525 GGSFSPKEAWETLKNSLDFWEWIIARLMGFPRPQTSTVTSVDQFLG--GLPVQCWAEVMERAGLSHRTKEDVLSPTEFQRIVETI-LCHRNAAFCHHRDKAKRHAGHENFLGISLSLISSTPTPFLMVTDLPADVTHAEMITAFRPDARVPDRVMFEDIDIPVRGGVLAGSKAKNVMPQ-----------TAAILSFQSEETARLMRDMWDGGVLR--------------PQHVCVLGGMMLPAVGAGTFFSCIWIGAFSGKQ----LSAIELMDYATRTWPPDTLMRPVFSEAPS-SVESVHLTFPSCLSARDAIEGL-RGNQPGKQLPDA----EASDGRADGGVGYIAGTSCSVLFS 846
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1S2_9PHAE1.870e-3533.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2440844..2444426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1211
Cds size1179
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927341.6261072-UTR-C-linearis_contig10:2440843..24408741622927341.6261072-UTR-C-linearis_contig10:2440843..2440874Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2440844..2440874 +
1690879638.5751064-UTR-C-linearis_contig10:2440843..24408741690879638.5751064-UTR-C-linearis_contig10:2440843..2440874Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2440844..2440874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927341.6364207-CDS-C-linearis_contig10:2440874..24409481622927341.6364207-CDS-C-linearis_contig10:2440874..2440948Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2440875..2440948 +
1690879638.5857925-CDS-C-linearis_contig10:2440874..24409481690879638.5857925-CDS-C-linearis_contig10:2440874..2440948Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2440875..2440948 +
1622927341.647989-CDS-C-linearis_contig10:2441481..24416441622927341.647989-CDS-C-linearis_contig10:2441481..2441644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2441482..2441644 +
1690879638.5966148-CDS-C-linearis_contig10:2441481..24416441690879638.5966148-CDS-C-linearis_contig10:2441481..2441644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2441482..2441644 +
1622927341.6573913-CDS-C-linearis_contig10:2441998..24421681622927341.6573913-CDS-C-linearis_contig10:2441998..2442168Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2441999..2442168 +
1690879638.6099167-CDS-C-linearis_contig10:2441998..24421681690879638.6099167-CDS-C-linearis_contig10:2441998..2442168Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2441999..2442168 +
1622927341.6759331-CDS-C-linearis_contig10:2442690..24429311622927341.6759331-CDS-C-linearis_contig10:2442690..2442931Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2442691..2442931 +
1690879638.6204655-CDS-C-linearis_contig10:2442690..24429311690879638.6204655-CDS-C-linearis_contig10:2442690..2442931Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2442691..2442931 +
1622927341.6928484-CDS-C-linearis_contig10:2443359..24435831622927341.6928484-CDS-C-linearis_contig10:2443359..2443583Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2443360..2443583 +
1690879638.6380756-CDS-C-linearis_contig10:2443359..24435831690879638.6380756-CDS-C-linearis_contig10:2443359..2443583Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2443360..2443583 +
1622927341.7117774-CDS-C-linearis_contig10:2444119..24444261622927341.7117774-CDS-C-linearis_contig10:2444119..2444426Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2444120..2444426 +
1690879638.647822-CDS-C-linearis_contig10:2444119..24444261690879638.647822-CDS-C-linearis_contig10:2444119..2444426Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2444120..2444426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.565.1prot_C-linearis_contig10.565.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2440875..2444426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.565.1

>prot_C-linearis_contig10.565.1 ID=prot_C-linearis_contig10.565.1|Name=mRNA_C-linearis_contig10.565.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=393bp
MSPEQWESAKSSPEFWLPITSSLARFRRKDKFSLKTMERYLKHVSVPALC
WAEIRSQAGLRHLDLSDNLTDQEYDRIIETFRLLSDNAHNQAQGGLSREE
ERRRSLALHSALPTPYLVVTNLPADVTREELFEAFRPDAEISDPVLMETG
GGSVETRRSHDDPHRRHHREQRAGGVVWLLSYRSDEEARRFRDRWDGQEL
RWRQPQQGLNQEQQQPERLAVRFSLGLNRGCIWIQPREQQQRQQHLGFQA
LVDFAQRRLPEDSTVRPVFAGPDRLSVSSVLLTFSSHEACRHAIEDLWQG
RDPHSGNGEGGGGWRRRRGREEAGVGFVCGTECSIFFASSVETATASASA
SPSTGRGDSYPAHELIRARIFSDPSVSAVSSPPAVAAAGTEQA
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mRNA from alignment at C-linearis_contig10:2440844..2444426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.565.1 ID=mRNA_C-linearis_contig10.565.1|Name=mRNA_C-linearis_contig10.565.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3583bp|location=Sequence derived from alignment at C-linearis_contig10:2440844..2444426+ (Chordaria linearis ClinC8C monoicous)
GAGGGCCGACTGGAGATCGGCAGGGAAGGGGATGTCGCCGGAGCAGTGGG
AGAGCGCGAAGTCGAGCCCCGAGTTTTGGCTGCCGATAACGAGCTCGCTC
GCCAGGTGGGTTCGTATTGGCGGAGGGGGGGGAGGGGGGGAGCATCGGCC
GGGCCTGGCTTGCGGAGAGCGGGGGGGCGGGGGTGTTTTGCAACGGTGCC
CATCTCGGGACGATTCCCAAGTGCAGTTTTGTCTGCTCAACATAGTTTTC
GGCCGCTGCGCCCCAGTTGTATCGCGCTCTCCGAGAAACTTGCGATTCGC
GTCCTCGAGCTGAAGGTGGCCACGGTATTTCTGCGATTGTGTTCGTTGCT
TTCCCTGGCCCGCTCGCGCTTTGGCCCTGTCAGAGCAACATTTCTCCTGC
TACATACGCATAGAAGCAGCCACGCAACCTTCGCAGAGACGGCATCTTAC
AACCGTAGCCTTGTCAGAGTAATACTTGCTAGTTCTCGTCTATCTGCTGC
TTGATACTGCCTGGTTTCCTCACGTTAACGTTGTACCTCTTGTGTGTGTG
TGTGTGTGTGTTTTGCGCTTCCCCATCCCTCCCGTTCCGTGCCTCGTGCA
CCTCATTGTGTTGCCCCGCGGCGAAAACACGATGGAAGGTTCCGGCGCAA
AGACAAGTTCTCGCTGAAGACCATGGAGCGCTACTTGAAGCACGTTTCGG
TCCCGGCCCTCTGCTGGGCGGAAATTCGGTCCCAGGCGGGACTCCGCCAT
CTCGACCTCAGCGATAACCTCACGGATCAGGAGTACGACCGAATCATCGA
GGTGAGTTTTCGCATGCGCGTGCGTTGTATATATTTGCGAAGATTTGCCG
TGTATGTAGAGAACCGTCCACCCTGGCTGATAGAGAATAGGGTCCGTCTG
GAGCAATTGATATACGCGTGAAACGTTAAGCTGTGTATTGGCCGGCGAAA
GGAAGTGCGGCAACTTGCCATGCCGCTTTCTGCCACCAACGAGGGCAGCA
TGACAGCTGGAGGGCGCACTAGCCCGAAAAAACTCGCTGAGGTAACCAAC
CCCACCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCACCGCCATCCCACC
CCTTGTTGAACTTGTTGTCCCCGCGGTTTTTGTGTGGGTGAAAAACAACA
TCAAGACGTTTCGTTTGCTGAGCGACAACGCCCACAACCAGGCACAAGGA
GGCTTGAGCAGAGAGGAGGAGCGGCGGCGTTCGTTGGCCCTCCATTCCGC
TCTTCCGACGCCGTACCTGGTGGTGACAAACCTCCCCGCGGACGTTACGC
GCGAGGAGCTCTTCGAGGCCTTCCGGTGAGGGCTAAATATGCGCACGCAC
GCGTTGACGCGTGTAATGTATCGCTCTGCAGCTTCTACCGGAGCGATTCC
TTGTGGTCGACGTCGTTGTTGGTGTTTGCTTAGCTGCTGCTGCTTCTGCT
GCTGCTGAATGTCTTGAAGAACATCAGCGTGCCGGCTTCCACATTGTTGC
CTCGCTTCCATCGCTCTTACAGTTGCGGCTGCGTTGCTTTGCGGAAGCAA
GACGTCCTCGGTTTCACGCATGCTGAGCACTCACTGCCCAGGCTCTCCCG
CCCCTCACCTACCTTTGCTCGCCAGGTTGGCGTTGCCGTCCTTGGGCGGG
CACGACCACCAAAAACTCGCCCCCCGCGTCACATTCCCCCAACACGTGTC
GAACAAAGCATGTACAGCAATACACTGAAACATGTCGAAACGAGCACGTT
GGCACCCATCGTACAACGTTCATTTCCGCTCTTCTTTTGTTTCCAGGAAC
GCCTGATCCCACGGAACCCCCCCAACCCCCACCCCCATGCCGTGCAGACC
CGATGCCGAGATTTCCGACCCCGTGCTGATGGAGACGGGCGGCGGCTCGG
TGGAGACACGCCGGTCGCACGACGACCCCCACCGTCGGCACCACCGCGAG
CAGCGAGCGGGGGGAGTGGTGTGGCTGCTGTCGTACCGGTCGGACGAGGA
GGCTCGCCGGTTCAGGGATAGGTGGGACGGCCAGGAGCTGCGGTGGCGGC
AACCGCAGCAGGGGCTAAACCAGGAGCAGCAGCAACCGGTGCGTTTTGTT
TTTTCGTTCTTGGCTCGCTCATGTACGTACATACGCATGGACTCGTTTTT
TCTTCTTCTTTTTATCCAAGTACGGCTCTGCGGCGGTTTTCGACGTTCCG
GGTGGAGACCACTTCAAACAAAGTTGGTATTGCTGTTCTTTTTTAACTTG
CCCTCGCCCCTGCTCCCTCGGGGACACAAATAAGTCAGGAGAGCTTTCGC
ACACCATTTGTCTCGCGGTAGATGAATGCAGTACAACAACAAAAATAATG
AAAGACTTGTTTATTATTGCCAAGCACACTTGAACTTTTTGAGGCGGTTT
CTGGACATCTCGCCTTGAAAAGGCCCGCGGCGCTGACAGACGCTCTTCCT
GCTCTCCCGTTGGCCGACGCCACGACCATCACCACGTCCATCACCGGCCA
CCACGATCGCTAACAGGAGCGGTTGGCGGTTCGGTTTAGTCTAGGCCTAA
ACCGCGGCTGCATCTGGATCCAACCCCGGGAGCAGCAGCAGCGGCAGCAA
CACCTGGGCTTTCAGGCGCTGGTTGACTTCGCCCAGAGGAGGCTGCCGGA
GGACTCGACGGTCAGGCCGGTGTTCGCGGGGCCCGACCGGCTCTCCGTGT
CGTCCGTGTTGTTGACGTTTTCGTCTCACGAGGCGTGCAGGTGAGGAAGC
CTTGGGTGCAGATGAGGGAGAATGTCGTTGGTCATGGTCGATTTGTTCGT
GTTTTTTGGATGTCCGTTCACGAAACAAGGAGGGAAGGAGGGGTAGCCGG
ATTTCTTTTTGCGATCGGAGGCGATCGAGCGAAGAGACGGCGAATACCAA
CACCGCATGCACTGTCAGTTGTCAGGCGTTGTTTTTTGTTTAGTTTCCTT
GTTGGGTGCTTTGGAGCATTCAATCGTTCCGGGTTTACCCTGCACCGCGC
ATGATGATCGTGATGTATATCTCCCGTGAGGCAGAGAAATTGACCTAAAG
ACTAAGTTTGTATGTGGACCGTTGGTGTTTTTTCCTTGTCTTTGTAGTTT
CCTGTTTTTTTTCGTGGCGTGGTGTCCGCCCGCTGTCGTTTCAGACAAGC
GCTTGCTGTGATAAATATGATACTTCGTAGAACTACACGGATATCTCTTG
AAGGACTTATTCCCCCCCTCCTTTGCCACGCTAAATTTGTGCAATCTTTC
ATGTGCTGCTTACATACCACCACAAGGCACGCCATCGAGGATCTCTGGCA
GGGACGCGACCCCCACAGCGGCAATGGAGAAGGAGGAGGAGGATGGCGAC
GACGACGAGGCAGAGAAGAAGCAGGGGTAGGCTTCGTCTGCGGCACCGAG
TGCTCCATCTTCTTCGCAAGCAGCGTCGAGACTGCCACCGCCTCCGCCTC
CGCCTCCCCGTCCACAGGCCGAGGCGACTCCTACCCGGCGCACGAGCTCA
TCCGCGCGAGGATCTTCTCCGACCCCAGCGTCTCGGCAGTTTCTTCGCCG
CCGGCGGTAGCAGCGGCGGGAACAGAACAGGCG
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Coding sequence (CDS) from alignment at C-linearis_contig10:2440844..2444426+

>mRNA_C-linearis_contig10.565.1 ID=mRNA_C-linearis_contig10.565.1|Name=mRNA_C-linearis_contig10.565.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at C-linearis_contig10:2440844..2444426+ (Chordaria linearis ClinC8C monoicous)
ATGTCGCCGGAGCAGTGGGAGAGCGCGAAGTCGAGCCCCGAGTTTTGGCT
GCCGATAACGAGCTCGCTCGCCAGATGTCGCCGGAGCAGTGGGAGAGCGC
GAAGTCGAGCCCCGAGTTTTGGCTGCCGATAACGAGCTCGCTCGCCAGGT
TCCGGCGCAAAGACAAGTTCTCGCTGAAGACCATGGAGCGCTACTTGAAG
CACGTTTCGGTCCCGGCCCTCTGCTGGGCGGAAATTCGGTCCCAGGCGGG
ACTCCGCCATCTCGACCTCAGCGATAACCTCACGGATCAGGAGTACGACC
GAATCATCGAGGTTCCGGCGCAAAGACAAGTTCTCGCTGAAGACCATGGA
GCGCTACTTGAAGCACGTTTCGGTCCCGGCCCTCTGCTGGGCGGAAATTC
GGTCCCAGGCGGGACTCCGCCATCTCGACCTCAGCGATAACCTCACGGAT
CAGGAGTACGACCGAATCATCGAGACGTTTCGTTTGCTGAGCGACAACGC
CCACAACCAGGCACAAGGAGGCTTGAGCAGAGAGGAGGAGCGGCGGCGTT
CGTTGGCCCTCCATTCCGCTCTTCCGACGCCGTACCTGGTGGTGACAAAC
CTCCCCGCGGACGTTACGCGCGAGGAGCTCTTCGAGGCCTTCCGACGTTT
CGTTTGCTGAGCGACAACGCCCACAACCAGGCACAAGGAGGCTTGAGCAG
AGAGGAGGAGCGGCGGCGTTCGTTGGCCCTCCATTCCGCTCTTCCGACGC
CGTACCTGGTGGTGACAAACCTCCCCGCGGACGTTACGCGCGAGGAGCTC
TTCGAGGCCTTCCGACCCGATGCCGAGATTTCCGACCCCGTGCTGATGGA
GACGGGCGGCGGCTCGGTGGAGACACGCCGGTCGCACGACGACCCCCACC
GTCGGCACCACCGCGAGCAGCGAGCGGGGGGAGTGGTGTGGCTGCTGTCG
TACCGGTCGGACGAGGAGGCTCGCCGGTTCAGGGATAGGTGGGACGGCCA
GGAGCTGCGGTGGCGGCAACCGCAGCAGGGGCTAAACCAGGAGCAGCAGC
AACCGACCCGATGCCGAGATTTCCGACCCCGTGCTGATGGAGACGGGCGG
CGGCTCGGTGGAGACACGCCGGTCGCACGACGACCCCCACCGTCGGCACC
ACCGCGAGCAGCGAGCGGGGGGAGTGGTGTGGCTGCTGTCGTACCGGTCG
GACGAGGAGGCTCGCCGGTTCAGGGATAGGTGGGACGGCCAGGAGCTGCG
GTGGCGGCAACCGCAGCAGGGGCTAAACCAGGAGCAGCAGCAACCGGAGC
GGTTGGCGGTTCGGTTTAGTCTAGGCCTAAACCGCGGCTGCATCTGGATC
CAACCCCGGGAGCAGCAGCAGCGGCAGCAACACCTGGGCTTTCAGGCGCT
GGTTGACTTCGCCCAGAGGAGGCTGCCGGAGGACTCGACGGTCAGGCCGG
TGTTCGCGGGGCCCGACCGGCTCTCCGTGTCGTCCGTGTTGTTGACGTTT
TCGTCTCACGAGGCGTGCAGGAGCGGTTGGCGGTTCGGTTTAGTCTAGGC
CTAAACCGCGGCTGCATCTGGATCCAACCCCGGGAGCAGCAGCAGCGGCA
GCAACACCTGGGCTTTCAGGCGCTGGTTGACTTCGCCCAGAGGAGGCTGC
CGGAGGACTCGACGGTCAGGCCGGTGTTCGCGGGGCCCGACCGGCTCTCC
GTGTCGTCCGTGTTGTTGACGTTTTCGTCTCACGAGGCGTGCAGGCACGC
CATCGAGGATCTCTGGCAGGGACGCGACCCCCACAGCGGCAATGGAGAAG
GAGGAGGAGGATGGCGACGACGACGAGGCAGAGAAGAAGCAGGGGTAGGC
TTCGTCTGCGGCACCGAGTGCTCCATCTTCTTCGCAAGCAGCGTCGAGAC
TGCCACCGCCTCCGCCTCCGCCTCCCCGTCCACAGGCCGAGGCGACTCCT
ACCCGGCGCACGAGCTCATCCGCGCGAGGATCTTCTCCGACCCCAGCGTC
TCGGCAGTTTCTTCGCCGCCGGCGGTAGCAGCGGCGGGAACAGAACAGGC
GGCACGCCATCGAGGATCTCTGGCAGGGACGCGACCCCCACAGCGGCAAT
GGAGAAGGAGGAGGAGGATGGCGACGACGACGAGGCAGAGAAGAAGCAGG
GGTAGGCTTCGTCTGCGGCACCGAGTGCTCCATCTTCTTCGCAAGCAGCG
TCGAGACTGCCACCGCCTCCGCCTCCGCCTCCCCGTCCACAGGCCGAGGC
GACTCCTACCCGGCGCACGAGCTCATCCGCGCGAGGATCTTCTCCGACCC
CAGCGTCTCGGCAGTTTCTTCGCCGCCGGCGGTAGCAGCGGCGGGAACAG
AACAGGCG
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