mRNA_C-linearis_contig10.554.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 225 bits (574), Expect = 7.230e-58 Identity = 123/222 (55.41%), Postives = 149/222 (67.12%), Query Frame = 3 Query: 3 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLIV-------------------------RKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQN 593
G+DQLQ LFE + R + RFNS +++IQ+LT++V D PRLVVLDDVWER VVDTL+PTGL+LLV TR SVVA GGRT VG M+ +A ELLK +S A+ALP+TEA QVA ACGWHALTL + + K + RGP+M+ D+GDDPTK L PVL+LSL+SLG D + LFL L+VLARGV AP PMLASIW
Sbjct: 296 GEDQLQALFEALTRGAFPAAKLPPRFNSPEEIIQYLTVLVAEDKLPRLVVLDDVWERAVVDTLRPTGLRLLVTTRLDSVVAMRGGRTTVGNMDGGEARELLKSRSGAIALPKTEADQVAAACGWHALTLAIAGSLRFVKDDPNSASTWRRLASEMTQTKNSVRGPKMDADIGDDPTKKSLFPVLELSLESLGGDRERLFLSLLVLARGVSAPAPMLASIWDK 517
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE) HSP 1 Score: 213 bits (542), Expect = 2.050e-56 Identity = 110/167 (65.87%), Postives = 133/167 (79.64%), Query Frame = 1 Query: 844 QDHRGARKEAGFFASNSLLQEVDDSFRLHDVLLDFIAIKCQGENALVEEAVKRQSQYLGKLAVLRGYTEKGEFLEGFYSLIDLGRKLDELCGNEVLEVDAYSASLGELGGNESEDAAHVFWAAGTLYKLRGKYEEAKPLFKRSLAIREKVLGPDHLAVATGLNNLAA 1344
+D+ GAR EA FF SNSLLQEVD SFR+HD+LLDF +C+ E +++EAV+RQSQ+LG+LAVLRGY +GE LEGFYSLI L RKL ELCGN+ LEV+AY ASLGELG +ES AA F A G L +L GKY++A+PL++RS AIREKVLGP+HL VA LNN AA
Sbjct: 28 KDNMGARNEADFFVSNSLLQEVDGSFRVHDLLLDFARTRCEKE--IIDEAVERQSQFLGRLAVLRGYEAEGESLEGFYSLIVLWRKLAELCGNKQLEVEAYDASLGELGDDESTGAADAFSAVGRLLQLEGKYDDAEPLYERSQAIREKVLGPEHLDVAQSLNNRAA 192
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE) HSP 1 Score: 191 bits (485), Expect = 9.790e-48 Identity = 110/198 (55.56%), Postives = 133/198 (67.17%), Query Frame = 3 Query: 3 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLIVRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQNV 596
G+DQL L + +AR+ + +FNS++D+IQHLT+VV D PRL+VLDDV ER VVDTL+PTGL+LLV TR S+VA GGRT VG M+RA+A ELLK KS A+ LPETEA Q T GP+M+ D+GD+PTK L VLDLSL LG+ + LFL LVVLARGV AP PMLASIW V
Sbjct: 251 GEDQLFALCDILARKVTPATKLPQQFNSLEDIIQHLTVVVAEDRLPRLMVLDDVLERAVVDTLRPTGLRLLVTTRLDSLVAVRGGRTVVGNMDRAEARELLKSKSGAIELPETEADQT----------------KTILGPQMDADIGDNPTKESLFHVLDLSLKYLGRHQHRLFLSLVVLARGVSAPAPMLASIWDMV 432
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: D7G7W8_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W8_ECTSI) HSP 1 Score: 146 bits (369), Expect = 2.600e-32 Identity = 97/223 (43.50%), Postives = 123/223 (55.16%), Query Frame = 3 Query: 3 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTR-PRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLIV-------------------------RKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQN 593
G +L L + +ARE + V + +DD ++ + V D PRL+VLDDVW EV+D L+PTGLQ+LV TR +SV G G VG ME +A ELL KKS AVALP EA QVA CG H LTL++ R K ++RG M TD ++P++ L PVL LS + L EQ FL L VLARGV APV MLA++W
Sbjct: 278 GNLKLPALVQRLARE---MDVVSENMDGLDDCVRDIAFAVARDNSVPRLLVLDDVWHEEVMDALRPTGLQILVTTRLASV---GRGML-VGDMEEGEARELLSKKSGAVALPVPEANQVARDCGCHPLTLVIAGSLRCVREAPDSALAWRELHSEIERIKRSSRGLEMATDSDEEPSQSSLFPVLSLSFERLKVQEQDSFLSLAVLARGVPAPVAMLANLWDK 493
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5JSG2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG2_9PHAE) HSP 1 Score: 144 bits (364), Expect = 6.570e-32 Identity = 96/223 (43.05%), Postives = 123/223 (55.16%), Query Frame = 3 Query: 3 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTR-PRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLIV-------------------------RKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQN 593
G +L L E +ARE + V + +DD ++ + V D PRL++LDDVW EVV+ L+PTGLQ++V TR +SV G VG ME +A ELL+KKS AVALP EA QVA CG H LTL + R K + RG +M TD ++P++ L PVL LS + L EQ FL LVVLARGV APV MLA++W
Sbjct: 278 GNLKLPALVERLARE---MDVVSENMDGLDDCVRDIAFAVARDNSVPRLLILDDVWHEEVVNALRPTGLQIVVTTRLASV----GRGMIVGDMEDGEARELLRKKSGAVALPAPEANQVARDCGCHPLTLAIAGSLRCVREAPDSALAWRELHSEIGRIKRSRRGLQMTTDSDEEPSQSPLFPVLRLSFERLRVQEQDSFLSLVVLARGVPAPVAMLANLWDK 493
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5KK53_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE) HSP 1 Score: 137 bits (345), Expect = 4.060e-31 Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 3 Query: 3 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQV 356
G+DQLQ LFEG+AR + RFNS++++IQHLT++V D PRLVVLDDVWER VVD L+PTGL+LLV TR SVVA GGRT VG M +A ELLK KS A+ LPETEA QV
Sbjct: 293 GEDQLQALFEGLARLAIPEAKLPQRFNSLEEIIQHLTVLVAEDKLPRLVVLDDVWERAVVDILRPTGLRLLVTTRLDSVVAVRGGRTVVGNMATGEARELLKSKSGAITLPETEADQV 410
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 130 bits (328), Expect = 3.890e-28 Identity = 76/171 (44.44%), Postives = 109/171 (63.74%), Query Frame = 1 Query: 841 LQDHRGARKEAGFFASNSLLQEVDDS-FRLHDVLLDFIAIKCQGENALVEEAVKRQSQYLGKLAVLRGY--TEKGEFLEGFYSLIDLGRKLDELCGNEVLEVDAYSASLGELGGNES-EDAAHVFWAAGTLYKLRGKYEEAKPLFKRSLAIREKVLGPDHLAVATGLNNLA 1341
++D G R+EA S LLQ V S +R+HD++L+F+ + E +VE+A Q+QYLG++ VL+ Y E G +G + L L R +++L G+ LEV +Y ASLGEL E+ ED A + G L+ ++GK+ EA+PL+ RS AI+EKVLGP+H VAT LNN A
Sbjct: 300 IEDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSYRWVGFLFNIQGKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNNRA 470
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 129 bits (325), Expect = 5.730e-27 Identity = 75/173 (43.35%), Postives = 108/173 (62.43%), Query Frame = 1 Query: 841 LQDHRGARKEAGFFASNSLLQEVDDS-FRLHDVLLDFIAIKCQGENALVEEAVKRQSQYLGKLAVLRGY--TEKGEFLEGFYSLIDLGRKLDELCGNEVLEVDAYSASLGELGGNESEDA-AHVFWAAGTLYKLRGKYEEAKPLFKRSLAIREKVLGPDHLAVATGLNNLAAL 1347
++D G R +A S LL V +R+HD++L+F + E V++A Q+QYLG+L VL GY E G +G + L L R +++L G+ LEV +Y SLGEL E+ A A +W+ G L+ ++GKY EA+PL++RSLAI+EKVLGP+H VAT L+N A+L
Sbjct: 559 VEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSYWSVGFLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASL 731
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 116 bits (291), Expect = 7.560e-23 Identity = 70/169 (41.42%), Postives = 102/169 (60.36%), Query Frame = 1 Query: 841 LQDHRGARKEAGFFASNSLLQEVDDS-FRLHDVLLDFIAIKCQGENALVEEAVKRQSQYLGKLAVLRGY--TEKGEFLEGFYSLIDLGRKLDELCGNEVLEVDAYSASLGELGGNESEDA-AHVFWAAGTLYKLRGKYEEAKPLFKRSLAIREKVLGPDHLAVATGLNN 1335
++D G R +A S LL V +R+HD++L+F + E V++A Q+QYLG+L VL Y E G +G + L L R +++L G+ LEV +Y ASL EL E+ +A A + + G L+ ++ KY EA+PL++RS AI+EKVLGP+H VAT LNN
Sbjct: 542 IEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSYGSVGFLFNIQSKYAEAEPLYERSRAIQEKVLGPEHPHVATSLNN 710
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 110 bits (276), Expect = 5.200e-21 Identity = 96/277 (34.66%), Postives = 133/277 (48.01%), Query Frame = 3 Query: 6 KDQLQVLFEGIAREDRMVPT-----VQHRFNSVDDVIQHLTLVVWAD-TRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALP----ETEAGQVAEACGWHALTLIVRKKATA-RGPRMETDVGDDPTKLL----------------LLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQNVFV*LVFHGLRSLPEQCIFRALVGVVR*MISGDQ-FRVWQVLQELRMSPAKTSL 752
K+ L L +G+ARE + PT V +S++ V QHL VV + T PRLVVLDDVWEREVVD L P G ++L+ TR SVV R D+G M +A ELL+K S V P + +V CG L L + +A +G + ++ K + VL+ S DSL +Q FL + VLA G LAP+ ML ++W+ G R E + + L+ V GD +RV ++ E AKTS+
Sbjct: 295 KNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPARRLDLGDMTEEEALELLRKTSGTVGQPGDYVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKSFENVAKKMRARGQQSSAIKVVLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWEIEDA----EGTRDEAEGLVNKCLLHAV-----GDGGYRVHDMVLEF----AKTSI 558 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.554.1 >prot_C-linearis_contig10.554.1 ID=prot_C-linearis_contig10.554.1|Name=mRNA_C-linearis_contig10.554.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=345bp MRRWVSMDLLATATGNKMTDLTLQDHRGARKEAGFFASNSLLQEVDDSFRback to top mRNA from alignment at C-linearis_contig10:2372120..2376467+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.554.1 ID=mRNA_C-linearis_contig10.554.1|Name=mRNA_C-linearis_contig10.554.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4348bp|location=Sequence derived from alignment at C-linearis_contig10:2372120..2376467+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2372120..2376467+ >mRNA_C-linearis_contig10.554.1 ID=mRNA_C-linearis_contig10.554.1|Name=mRNA_C-linearis_contig10.554.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2070bp|location=Sequence derived from alignment at C-linearis_contig10:2372120..2376467+ (Chordaria linearis ClinC8C monoicous)back to top |