mRNA_C-linearis_contig10.554.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.554.1
Unique NamemRNA_C-linearis_contig10.554.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 7.230e-58
Identity = 123/222 (55.41%), Postives = 149/222 (67.12%), Query Frame = 3 
Query:    3 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLIV-------------------------RKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQN 593
            G+DQLQ LFE + R       +  RFNS +++IQ+LT++V  D  PRLVVLDDVWER VVDTL+PTGL+LLV TR  SVVA  GGRT VG M+  +A ELLK +S A+ALP+TEA QVA ACGWHALTL +                         + K + RGP+M+ D+GDDPTK  L PVL+LSL+SLG D + LFL L+VLARGV AP PMLASIW  
Sbjct:  296 GEDQLQALFEALTRGAFPAAKLPPRFNSPEEIIQYLTVLVAEDKLPRLVVLDDVWERAVVDTLRPTGLRLLVTTRLDSVVAMRGGRTTVGNMDGGEARELLKSRSGAIALPKTEADQVAAACGWHALTLAIAGSLRFVKDDPNSASTWRRLASEMTQTKNSVRGPKMDADIGDDPTKKSLFPVLELSLESLGGDRERLFLSLLVLARGVSAPAPMLASIWDK 517
[Close]
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 2.050e-56
Identity = 110/167 (65.87%), Postives = 133/167 (79.64%), Query Frame = 1 
Query:  844 QDHRGARKEAGFFASNSLLQEVDDSFRLHDVLLDFIAIKCQGENALVEEAVKRQSQYLGKLAVLRGYTEKGEFLEGFYSLIDLGRKLDELCGNEVLEVDAYSASLGELGGNESEDAAHVFWAAGTLYKLRGKYEEAKPLFKRSLAIREKVLGPDHLAVATGLNNLAA 1344
            +D+ GAR EA FF SNSLLQEVD SFR+HD+LLDF   +C+ E  +++EAV+RQSQ+LG+LAVLRGY  +GE LEGFYSLI L RKL ELCGN+ LEV+AY ASLGELG +ES  AA  F A G L +L GKY++A+PL++RS AIREKVLGP+HL VA  LNN AA
Sbjct:   28 KDNMGARNEADFFVSNSLLQEVDGSFRVHDLLLDFARTRCEKE--IIDEAVERQSQFLGRLAVLRGYEAEGESLEGFYSLIVLWRKLAELCGNKQLEVEAYDASLGELGDDESTGAADAFSAVGRLLQLEGKYDDAEPLYERSQAIREKVLGPEHLDVAQSLNNRAA 192
[Close]
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 9.790e-48
Identity = 110/198 (55.56%), Postives = 133/198 (67.17%), Query Frame = 3 
Query:    3 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLIVRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQNV 596
            G+DQL  L + +AR+      +  +FNS++D+IQHLT+VV  D  PRL+VLDDV ER VVDTL+PTGL+LLV TR  S+VA  GGRT VG M+RA+A ELLK KS A+ LPETEA Q                  T  GP+M+ D+GD+PTK  L  VLDLSL  LG+ +  LFL LVVLARGV AP PMLASIW  V
Sbjct:  251 GEDQLFALCDILARKVTPATKLPQQFNSLEDIIQHLTVVVAEDRLPRLMVLDDVLERAVVDTLRPTGLRLLVTTRLDSLVAVRGGRTVVGNMDRAEARELLKSKSGAIELPETEADQT----------------KTILGPQMDADIGDNPTKESLFHVLDLSLKYLGRHQHRLFLSLVVLARGVSAPAPMLASIWDMV 432
[Close]
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: D7G7W8_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W8_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.600e-32
Identity = 97/223 (43.50%), Postives = 123/223 (55.16%), Query Frame = 3 
Query:    3 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTR-PRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLIV-------------------------RKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQN 593
            G  +L  L + +ARE   +  V    + +DD ++ +   V  D   PRL+VLDDVW  EV+D L+PTGLQ+LV TR +SV   G G   VG ME  +A ELL KKS AVALP  EA QVA  CG H LTL++                         R K ++RG  M TD  ++P++  L PVL LS + L   EQ  FL L VLARGV APV MLA++W  
Sbjct:  278 GNLKLPALVQRLARE---MDVVSENMDGLDDCVRDIAFAVARDNSVPRLLVLDDVWHEEVMDALRPTGLQILVTTRLASV---GRGML-VGDMEEGEARELLSKKSGAVALPVPEANQVARDCGCHPLTLVIAGSLRCVREAPDSALAWRELHSEIERIKRSSRGLEMATDSDEEPSQSSLFPVLSLSFERLKVQEQDSFLSLAVLARGVPAPVAMLANLWDK 493
[Close]
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5JSG2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG2_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 6.570e-32
Identity = 96/223 (43.05%), Postives = 123/223 (55.16%), Query Frame = 3 
Query:    3 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTR-PRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLIV-------------------------RKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQN 593
            G  +L  L E +ARE   +  V    + +DD ++ +   V  D   PRL++LDDVW  EVV+ L+PTGLQ++V TR +SV    G    VG ME  +A ELL+KKS AVALP  EA QVA  CG H LTL +                         R K + RG +M TD  ++P++  L PVL LS + L   EQ  FL LVVLARGV APV MLA++W  
Sbjct:  278 GNLKLPALVERLARE---MDVVSENMDGLDDCVRDIAFAVARDNSVPRLLILDDVWHEEVVNALRPTGLQIVVTTRLASV----GRGMIVGDMEDGEARELLRKKSGAVALPAPEANQVARDCGCHPLTLAIAGSLRCVREAPDSALAWRELHSEIGRIKRSRRGLQMTTDSDEEPSQSPLFPVLRLSFERLRVQEQDSFLSLVVLARGVPAPVAMLANLWDK 493
[Close]
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5KK53_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 4.060e-31
Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 3 
Query:    3 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQV 356
            G+DQLQ LFEG+AR       +  RFNS++++IQHLT++V  D  PRLVVLDDVWER VVD L+PTGL+LLV TR  SVVA  GGRT VG M   +A ELLK KS A+ LPETEA QV
Sbjct:  293 GEDQLQALFEGLARLAIPEAKLPQRFNSLEEIIQHLTVLVAEDKLPRLVVLDDVWERAVVDILRPTGLRLLVTTRLDSVVAVRGGRTVVGNMATGEARELLKSKSGAITLPETEADQV 410
[Close]
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 3.890e-28
Identity = 76/171 (44.44%), Postives = 109/171 (63.74%), Query Frame = 1 
Query:  841 LQDHRGARKEAGFFASNSLLQEVDDS-FRLHDVLLDFIAIKCQGENALVEEAVKRQSQYLGKLAVLRGY--TEKGEFLEGFYSLIDLGRKLDELCGNEVLEVDAYSASLGELGGNES-EDAAHVFWAAGTLYKLRGKYEEAKPLFKRSLAIREKVLGPDHLAVATGLNNLA 1341
            ++D  G R+EA    S  LLQ V  S +R+HD++L+F+    + E  +VE+A   Q+QYLG++ VL+ Y   E G   +G + L  L R +++L G+  LEV +Y ASLGEL   E+ ED A  +   G L+ ++GK+ EA+PL+ RS AI+EKVLGP+H  VAT LNN A
Sbjct:  300 IEDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSYRWVGFLFNIQGKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNNRA 470
[Close]
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.730e-27
Identity = 75/173 (43.35%), Postives = 108/173 (62.43%), Query Frame = 1 
Query:  841 LQDHRGARKEAGFFASNSLLQEVDDS-FRLHDVLLDFIAIKCQGENALVEEAVKRQSQYLGKLAVLRGY--TEKGEFLEGFYSLIDLGRKLDELCGNEVLEVDAYSASLGELGGNESEDA-AHVFWAAGTLYKLRGKYEEAKPLFKRSLAIREKVLGPDHLAVATGLNNLAAL 1347
            ++D  G R +A    S  LL  V    +R+HD++L+F     + E   V++A   Q+QYLG+L VL GY   E G   +G + L  L R +++L G+  LEV +Y  SLGEL   E+  A A  +W+ G L+ ++GKY EA+PL++RSLAI+EKVLGP+H  VAT L+N A+L
Sbjct:  559 VEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSYWSVGFLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASL 731
[Close]
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.560e-23
Identity = 70/169 (41.42%), Postives = 102/169 (60.36%), Query Frame = 1 
Query:  841 LQDHRGARKEAGFFASNSLLQEVDDS-FRLHDVLLDFIAIKCQGENALVEEAVKRQSQYLGKLAVLRGY--TEKGEFLEGFYSLIDLGRKLDELCGNEVLEVDAYSASLGELGGNESEDA-AHVFWAAGTLYKLRGKYEEAKPLFKRSLAIREKVLGPDHLAVATGLNN 1335
            ++D  G R +A    S  LL  V    +R+HD++L+F     + E   V++A   Q+QYLG+L VL  Y   E G   +G + L  L R +++L G+  LEV +Y ASL EL   E+ +A A  + + G L+ ++ KY EA+PL++RS AI+EKVLGP+H  VAT LNN
Sbjct:  542 IEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSYGSVGFLFNIQSKYAEAEPLYERSRAIQEKVLGPEHPHVATSLNN 710
[Close]
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.200e-21
Identity = 96/277 (34.66%), Postives = 133/277 (48.01%), Query Frame = 3 
Query:    6 KDQLQVLFEGIAREDRMVPT-----VQHRFNSVDDVIQHLTLVVWAD-TRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALP----ETEAGQVAEACGWHALTLIVRKKATA-RGPRMETDVGDDPTKLL----------------LLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQNVFV*LVFHGLRSLPEQCIFRALVGVVR*MISGDQ-FRVWQVLQELRMSPAKTSL 752
            K+ L  L +G+ARE  + PT     V    +S++ V QHL  VV +  T PRLVVLDDVWEREVVD L P G ++L+ TR  SVV     R D+G M   +A ELL+K S  V  P      +  +V   CG   L L +    +A +G  +     ++  K                  +  VL+ S DSL   +Q  FL + VLA G LAP+ ML ++W+         G R   E  + + L+  V     GD  +RV  ++ E     AKTS+
Sbjct:  295 KNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPARRLDLGDMTEEEALELLRKTSGTVGQPGDYVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKSFENVAKKMRARGQQSSAIKVVLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWEIEDA----EGTRDEAEGLVNKCLLHAV-----GDGGYRVHDMVLEF----AKTSI 558
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJK0_9PHAE7.230e-5855.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY6_9PHAE2.050e-5665.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6Q8_9PHAE9.790e-4855.56NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G7W8_ECTSI2.600e-3243.50NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5JSG2_9PHAE6.570e-3243.05AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KK53_9PHAE4.060e-3162.71NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5LJA6_9PHAE3.890e-2844.44NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI5.730e-2743.35NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI7.560e-2341.42NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI5.200e-2134.66NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2372120..2376467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue2.1e-31
Seed eggNOG ortholog2880.D7G7W8
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons7
Model size2428
Cds size1035
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927340.9033136-UTR-C-linearis_contig10:2372119..23724721622927340.9033136-UTR-C-linearis_contig10:2372119..2372472Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2372120..2372472 +
1690879637.9649763-UTR-C-linearis_contig10:2372119..23724721690879637.9649763-UTR-C-linearis_contig10:2372119..2372472Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2372120..2372472 +
1622927340.9128847-UTR-C-linearis_contig10:2372570..23726061622927340.9128847-UTR-C-linearis_contig10:2372570..2372606Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2372571..2372606 +
1690879637.9768808-UTR-C-linearis_contig10:2372570..23726061690879637.9768808-UTR-C-linearis_contig10:2372570..2372606Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2372571..2372606 +
1622927340.9240746-UTR-C-linearis_contig10:2372681..23730661622927340.9240746-UTR-C-linearis_contig10:2372681..2373066Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2372682..2373066 +
1690879637.9864964-UTR-C-linearis_contig10:2372681..23730661690879637.9864964-UTR-C-linearis_contig10:2372681..2373066Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2372682..2373066 +
1622927340.9955802-UTR-C-linearis_contig10:2375848..23764671622927340.9955802-UTR-C-linearis_contig10:2375848..2376467Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2375849..2376467 +
1690879638.0607781-UTR-C-linearis_contig10:2375848..23764671690879638.0607781-UTR-C-linearis_contig10:2375848..2376467Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2375849..2376467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927340.941226-CDS-C-linearis_contig10:2373066..23735251622927340.941226-CDS-C-linearis_contig10:2373066..2373525Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2373067..2373525 +
1690879637.996706-CDS-C-linearis_contig10:2373066..23735251690879637.996706-CDS-C-linearis_contig10:2373066..2373525Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2373067..2373525 +
1622927340.9511976-CDS-C-linearis_contig10:2374293..23744191622927340.9511976-CDS-C-linearis_contig10:2374293..2374419Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2374294..2374419 +
1690879638.0139587-CDS-C-linearis_contig10:2374293..23744191690879638.0139587-CDS-C-linearis_contig10:2374293..2374419Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2374294..2374419 +
1622927340.9606404-CDS-C-linearis_contig10:2374828..23749541622927340.9606404-CDS-C-linearis_contig10:2374828..2374954Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2374829..2374954 +
1690879638.028182-CDS-C-linearis_contig10:2374828..23749541690879638.028182-CDS-C-linearis_contig10:2374828..2374954Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2374829..2374954 +
1622927340.9702969-CDS-C-linearis_contig10:2375282..23754081622927340.9702969-CDS-C-linearis_contig10:2375282..2375408Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2375283..2375408 +
1690879638.0391374-CDS-C-linearis_contig10:2375282..23754081690879638.0391374-CDS-C-linearis_contig10:2375282..2375408Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2375283..2375408 +
1622927340.9810383-CDS-C-linearis_contig10:2375650..23758481622927340.9810383-CDS-C-linearis_contig10:2375650..2375848Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2375651..2375848 +
1690879638.0494676-CDS-C-linearis_contig10:2375650..23758481690879638.0494676-CDS-C-linearis_contig10:2375650..2375848Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2375651..2375848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.554.1prot_C-linearis_contig10.554.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2373067..2375848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.554.1

>prot_C-linearis_contig10.554.1 ID=prot_C-linearis_contig10.554.1|Name=mRNA_C-linearis_contig10.554.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=345bp
MRRWVSMDLLATATGNKMTDLTLQDHRGARKEAGFFASNSLLQEVDDSFR
LHDVLLDFIAIKCQGENALVEEAVKRQSQYLGKLAVLRGYTEKGEFLEGF
YSLIDLGRKLDELCGNEVLEVDAYSASLGELGGNESEDAAHVFWAAGTLY
KLRGKYEEAKPLFKRSLAIREKVLGPDHLAVATGLNNLAALFETQSRYEE
AKPLFKRSLAIDENVFGPDHPAVATGLNNLAGLFKTQGKYTEAAPLYERA
TEIWEKALGPDHRTVATVLSNRAVLSYQQGSHDTAVQLLERAFLIQTKKL
GEDHQDTVDTQNFLELVRQRMRAHDETEWGFLGSHARRAKAWRQ*
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mRNA from alignment at C-linearis_contig10:2372120..2376467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.554.1 ID=mRNA_C-linearis_contig10.554.1|Name=mRNA_C-linearis_contig10.554.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4348bp|location=Sequence derived from alignment at C-linearis_contig10:2372120..2376467+ (Chordaria linearis ClinC8C monoicous)
GTGGTAAAGACCAGCTCCAAGTCCTGTTTGAGGGTATCGCAAGGGAGGAC
CGTATGGTGCCCACAGTCCAACATCGATTCAATAGCGTGGACGACGTCAT
CCAGCACTTGACTCTGGTTGTGTGGGCGGACACCAGGCCTCGCCTCGTCG
TTCTGGATGACGTATGGGAACGCGAGGTCGTGGACACCTTGCAACCCACT
GGACTCCAGCTGTTGGTAGACACACGTCGTAGCTCGGTGGTGGCTGCCGG
AGGAGGACGCACGGATGTTGGGGGCATGGAGAGAGCACAGGCCCACGAAC
TGCTGAAAAAGAAGAGTTGTGCCGTGGCGCTTCCAGAGACCGAGGCTGGC
CAGGTGTGGGGCCTCCCGTTGCTAGCCGAATAGCTCGGGGTGTTCCGTCT
TTCTCATCTTGACCGTTAATTTCACTTTGTCTGTCGCTTGCTGTATGGCA
GGTTGCCGAGGCTTGTGGGTGGCACGCGTTGACGCTTGCCATCGCAGGGA
CACTTCGGTCCGTCACTTCTAGTCCGAACTCTGCTCCAACCTGGCAAGCG
CTGCACTCAGAGATTGTGCGAAAGAAGGCGACAGCCCGAGGTCCGCGGAT
GGAAACTGATGTCGGCGACGACCCGACCAAGCTGTTGCTGCTCCCAGTCC
TGGACCTGAGCTTGGATTCGCTCGGCAAAGACGAGCAGCACTTGTTCCTC
GGCCTGGTTGTGCTCGCCCGTGGTGTTCTGGCACCGGTTCCGATGCTAGC
TAGCATCTGGCAGAACGTGTTCGTGTGACTCGTGTTCCATGGGCTACGGA
GCCTTCCAGAACAATGCATATTTCGTGCACTTGTAGGCGTTGTGAGGTAG
ATGATTTCAGGAGACCAGTTTCGAGTATGGCAGGTGTTGCAGGAACTCAG
AATGAGCCCCGCTAAAACCTCTTTGTAAAGCCTTTACCGTAGCACACATG
CGAAGATGGGTTTCGATGGACCTTTTGGCGACAGCAACCGGTAATAAAAT
GACTGATCTGACTCTGCAGGACCACCGGGGTGCTAGGAAAGAAGCAGGGT
TCTTCGCGAGCAACTCACTTCTGCAAGAAGTGGATGACTCCTTCCGCCTG
CACGACGTGCTGTTGGACTTCATCGCAATTAAGTGCCAGGGCGAGAATGC
CTTGGTCGAGGAGGCCGTGAAACGTCAAAGCCAGTACCTGGGCAAGCTGG
CTGTGCTACGGGGCTATACCGAAAAAGGCGAATTCCTCGAAGGGTTTTAC
TCCCTGATCGATCTGGGGCGGAAACTGGATGAATTGTGTGGTAACGAGGT
GCTGGAGGTGGATGCCTACAGCGCAAGTCTTGGAGAGCTCGGTGGAAACG
AGTCCGAAGACGCGGCCCACGTTTTTTGGGCTGCGGGAACACTATATAAA
CTCCGGGTGGGTTCACGGTGCGAGTTTGTTGTTTGATGAAGATCGGGCGG
ATGGGAAGGCGAATTTTCGCGGATTTTCAATCGTGTAGGCGAAGGGGGTT
CGAAACGCCCAGCTCTACAGCAGTAGTACAACTATGTATGGAGAAATTGT
TGTACCTCGTACCTGGTGTTGTAGTGTTTGACAGTGACCCACATTTCTGC
AAACCCGATACGAAGTATGCCTACCGTTATGTATCCATCAGAACCCTTGC
ATTCCTCGCGTTTTCGGTCAGACCGTTCTCGGAGAAGATATCTCCATGTC
CTCTGAGCGTCCCTCCGGATTGAAAGTTGTTACAGTAAGCAATCACCGAT
GAAATTTCATGAGCTGGTGGAAATTCCATGCTTCCATTGTTCTTCCGTGA
CGCAATGCGAAAATCCACACGCATCCCTCCTTTCTCTTTCTTGTTTGCTC
TCACGAGCCCCGTCGCTCAGGCCGTCGTAGCAGCTAGATAACTGGGAGTA
CTACGCTGTCTGAAAGGGGACAAGGGATCGATCAGAACACGGGATCATAC
ACATCCCCAGCACAATTTGAACCGGCCCGCCGTGTTTCTTTTTTTGTAGT
GACGCAGCAGCCAACCTCATATCTGGTCAGCTTCGTAAGAGGTACTTTGA
CACCGGAGATACTGCGCTCGTTGAGCTGTTGAGTTGGGGATACTGTGCCT
GAAACACACGACGAGGATGTTCCACATTGTCTCCAGTCCATCTACCCCCT
GTGATCCCATTCTTCTTCTACTAGGGGAAGTACGAAGAAGCCAAGCCACT
GTTCAAGCGCTCGCTGGCCATTCGTGAGAAGGTGCTGGGCCCTGACCACC
TGGCGGTCGCTACGGGCCTCAACAACTTGGCGGCGTTGTTCGAGACTCAG
GTGAGAGTCTATCCCTGGGAAAGTGTCGGACGTTCCACGATTTTCGTTCC
ACGGGTTTCTGGTGTGAGTTGGTTGGAGCCGGGTGGACCACTGCCGTACA
CCACTGGCCTCACGATAACAATCCACCCTCTGGCTACACAGGGCAACTAC
GAAGAAGCCAAGCCACTGTACAAGCGCTCGCTGGCCATTCGTGAGAAGGT
GCTGGGCCCTGACCACCTGGCGGTCGCTACGGGCCTCAACAACTTGGCGG
CGTTGTTCGAGACTCAGGTGAGAGTCTATCCCTGGGAAAGTGTCGGACGT
TCCACGATTTTCGTTCCACGGGTTTCTGGTGTGAGTTGTTTGGAGTCGGG
TGGACCACTGCCGTACGCGACTGGCCTCACGACAACAACCCAACCCTCTG
GCTACACAGAGCCGTTACGAAGAAGCCAAGCCACTGTTCAAGCGCTCGCT
GGCTATTGATGAGAACGTTTTCGGCCCCGACCACCCGGCGGTCGCTACGG
GCCTCAACAACTTGGCGGGGTTGTTCAAGACTCAGGTGAGCTTCGATTCC
TGGGGAGTGTCGGGCGTTCCACGATTTTCGTTCCACGGGTTTCTGGTGTG
AGTTGTTTGGAGTCGGGTGGACCACTGCCGTACACAACTGCCCTCACGAC
AACAACCCACCGTACGGGTGGACAGGACAACGGGGAAAAGGCTAAGCCTC
TGTTTCAGCGCACGCTGGCCATTAAGGAGAAGGGTCTGGCCTCTGACCAT
CCGAAGGTCGCCGCAGACCTCAACAGCTTGGCGAGAGTGCTAAGGAACTG
TTCTTTTGAAGTGATGGATGCAACTGATACTCTGTCACCCCCACCTTGCG
CCCCTAATTCTAGGGTAAGTACACGGAGGCAGCACCTCTGTATGAGCGAG
CAACGGAGATTTGGGAGAAAGCTCTCGGTCCAGATCACCGAACGGTGGCG
ACAGTGCTCAGCAACCGGGCGGTGTTATCGTATCAACAGGTGAGCATCAT
ATTGTTCAACCAAGTTTCGCTGCAGTTGTTCACCCTGGCTGTAGATGTTT
GTCTCGCAAAAATACGCGCGGCAGAAGTTGCCTGTTTGTTCTCCACGTTA
ATTTTGCAAGAGCTCGTATGCTGCCGGCCAAAGTTCGTCATTTCCTGATT
CTCAACTCACACGTACTGTACATGCCACATACATGTTGTCAGGGTTTGAA
TTCCGCAACTCGACATACCAAACGACGACAGGGATCTCACGACACGGCTG
TTCAACTGTTGGAGAGGGCCTTTCTAATTCAGACGAAGAAGCTGGGGGAA
GACCACCAAGACACGGTCGACACTCAAAACTTCTTGGAGCTTGTGCGACA
AAGAATGCGTGCACATGATGAGACAGAGTGGGGTTTTCTAGGCTCTCATG
CGCGACGAGCGAAAGCTTGGCGCCAGTGAATCGTTCCACCACGCATGGCG
GCGTGGTAGGCGAGTGTGCGCACCAGATCAATGACGCTGCCTGCGTGCGC
ATTGCGTAAAAGTTCACTGTAAAAAGCGACAAGACACGCCAGAGGGCGGG
GGGTTCCGCAGTAAAGCTCAATTCTTTGCACGATTTTTTCAGAACGCGGC
AAGGAATGGGTCATAAGCTCTGAAATTTTGCACACCCTTCCGTTCGGTCA
TGTATCACGAAAATATACTTTCATTTTCATTTGGTCATCGGGTTGATGAG
TTATTTGTAATTGAGCGGCAAATTTGGGGAGAAATCGCCTCCGCGGGCCC
CCCGAGGAAAATTCAAACCCTCCCGAATCGTATGAAATGTTCGGGGTGAT
TGATGTGGCATCGTTGAACATGTTTCCGAAGTCAGGAATGGAATACAAAC
GTTTCTGCACTATTTACGCTTCAAACTTTGTGCAAGAAAGCGAGGACAAC
TTGGAAAAACATCTGGATGAGATGAGAGTGAAAATCTCCCCTCCCCGGGC
ATACGTCCACATGTTGATTCAAGCTCTGCAGACTTCATGTCCGGGCAATG
TTGGGTCGGGGGTCAAGAATATGTGATCAGAATAACCTAGTTTGGCAA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2372120..2376467+

>mRNA_C-linearis_contig10.554.1 ID=mRNA_C-linearis_contig10.554.1|Name=mRNA_C-linearis_contig10.554.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2070bp|location=Sequence derived from alignment at C-linearis_contig10:2372120..2376467+ (Chordaria linearis ClinC8C monoicous)
ATGCGAAGATGGGTTTCGATGGACCTTTTGGCGACAGCAACCGGTAATAA
AATGACTGATCTGACTCTGCAGGACCACCGGGGTGCTAGGAAAGAAGCAG
GGTTCTTCGCGAGCAACTCACTTCTGCAAGAAGTGGATGACTCCTTCCGC
CTGCACGACGTGCTGTTGGACTTCATCGCAATTAAGTGCCAGGGCGAGAA
TGCCTTGGTCGAGGAGGCCGTGAAACGTCAAAGCCAGTACCTGGGCAAGC
TGGCTGTGCTACGGGGCTATACCGAAAAAGGCGAATTCCTCGAAGGGTTT
TACTCCCTGATCGATCTGGGGCGGAAACTGGATGAATTGTGTGGTAACGA
GGTGCTGGAGGTGGATGCCTACAGCGCAAGTCTTGGAGAGCTCGGTGGAA
ACGAGTCCGAAGACGCGGCCCACGTTTTTTGGGCTGCGGGAACACTATAT
AAACTCCGGATGCGAAGATGGGTTTCGATGGACCTTTTGGCGACAGCAAC
CGGTAATAAAATGACTGATCTGACTCTGCAGGACCACCGGGGTGCTAGGA
AAGAAGCAGGGTTCTTCGCGAGCAACTCACTTCTGCAAGAAGTGGATGAC
TCCTTCCGCCTGCACGACGTGCTGTTGGACTTCATCGCAATTAAGTGCCA
GGGCGAGAATGCCTTGGTCGAGGAGGCCGTGAAACGTCAAAGCCAGTACC
TGGGCAAGCTGGCTGTGCTACGGGGCTATACCGAAAAAGGCGAATTCCTC
GAAGGGTTTTACTCCCTGATCGATCTGGGGCGGAAACTGGATGAATTGTG
TGGTAACGAGGTGCTGGAGGTGGATGCCTACAGCGCAAGTCTTGGAGAGC
TCGGTGGAAACGAGTCCGAAGACGCGGCCCACGTTTTTTGGGCTGCGGGA
ACACTATATAAACTCCGGGGGAAGTACGAAGAAGCCAAGCCACTGTTCAA
GCGCTCGCTGGCCATTCGTGAGAAGGTGCTGGGCCCTGACCACCTGGCGG
TCGCTACGGGCCTCAACAACTTGGCGGCGTTGTTCGAGACTCAGGGGAAG
TACGAAGAAGCCAAGCCACTGTTCAAGCGCTCGCTGGCCATTCGTGAGAA
GGTGCTGGGCCCTGACCACCTGGCGGTCGCTACGGGCCTCAACAACTTGG
CGGCGTTGTTCGAGACTCAGAGCCGTTACGAAGAAGCCAAGCCACTGTTC
AAGCGCTCGCTGGCTATTGATGAGAACGTTTTCGGCCCCGACCACCCGGC
GGTCGCTACGGGCCTCAACAACTTGGCGGGGTTGTTCAAGACTCAGAGCC
GTTACGAAGAAGCCAAGCCACTGTTCAAGCGCTCGCTGGCTATTGATGAG
AACGTTTTCGGCCCCGACCACCCGGCGGTCGCTACGGGCCTCAACAACTT
GGCGGGGTTGTTCAAGACTCAGGGTAAGTACACGGAGGCAGCACCTCTGT
ATGAGCGAGCAACGGAGATTTGGGAGAAAGCTCTCGGTCCAGATCACCGA
ACGGTGGCGACAGTGCTCAGCAACCGGGCGGTGTTATCGTATCAACAGGG
TAAGTACACGGAGGCAGCACCTCTGTATGAGCGAGCAACGGAGATTTGGG
AGAAAGCTCTCGGTCCAGATCACCGAACGGTGGCGACAGTGCTCAGCAAC
CGGGCGGTGTTATCGTATCAACAGGGATCTCACGACACGGCTGTTCAACT
GTTGGAGAGGGCCTTTCTAATTCAGACGAAGAAGCTGGGGGAAGACCACC
AAGACACGGTCGACACTCAAAACTTCTTGGAGCTTGTGCGACAAAGAATG
CGTGCACATGATGAGACAGAGTGGGGTTTTCTAGGCTCTCATGCGCGACG
AGCGAAAGCTTGGCGCCAGTGAGGATCTCACGACACGGCTGTTCAACTGT
TGGAGAGGGCCTTTCTAATTCAGACGAAGAAGCTGGGGGAAGACCACCAA
GACACGGTCGACACTCAAAACTTCTTGGAGCTTGTGCGACAAAGAATGCG
TGCACATGATGAGACAGAGTGGGGTTTTCTAGGCTCTCATGCGCGACGAG
CGAAAGCTTGGCGCCAGTGA
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