Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ribosomal protein L36e |
| Ec32 ortholog | Ec-22_003050.1 |
| Exons | 2 |
| Model size | 237 |
| Cds size | 237 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927323.4366026-CDS-C-linearis_contig10:2171616..2171700 | 1622927323.4366026-CDS-C-linearis_contig10:2171616..2171700 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2171617..2171700 + |
| 1690879626.2879162-CDS-C-linearis_contig10:2171616..2171700 | 1690879626.2879162-CDS-C-linearis_contig10:2171616..2171700 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2171617..2171700 + |
| 1622927323.4475942-CDS-C-linearis_contig10:2172445..2172598 | 1622927323.4475942-CDS-C-linearis_contig10:2172445..2172598 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2172446..2172598 + |
| 1690879626.297332-CDS-C-linearis_contig10:2172445..2172598 | 1690879626.297332-CDS-C-linearis_contig10:2172445..2172598 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 2172446..2172598 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.547.1 >prot_C-linearis_contig10.547.1 ID=prot_C-linearis_contig10.547.1|Name=mRNA_C-linearis_contig10.547.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=79bp
MAPAPKKVIGVSATTKIARKTRPSHHKGLATAPALALANSVSAFVSRRIA
PTHLQIRVLVQQYELVLCTAMYTYISKV* back to topmRNA from alignment at C-linearis_contig10:2171617..2172598+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.547.1 ID=mRNA_C-linearis_contig10.547.1|Name=mRNA_C-linearis_contig10.547.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=982bp|location=Sequence derived from alignment at C-linearis_contig10:2171617..2172598+ (Chordaria linearis ClinC8C monoicous)
ATGGCACCCGCACCCAAGAAGGTCATCGGTGTCTCCGCCACGACGAAGAT
CGCGCGGAAGACGCGGCCGTCCCACCACAAGGGGGTGAGCGTCGATTGGT
GGATAGAGAGGAGGGGCAGAGAGAAATTTGCATGGAGCTGCCCTCTTTTG
GTGGTGCAGACGCACCACCACCTGGCGCTTTGGTCGCGAAGATGGGAGAG
GGCCAGGTTGGTTTGGGCTTGGTTCGGGATATTACAGTGGGTGGTTTAGG
TCTCCTTTGTGGGCTTTGGTGTGGTTGAGTGTACGAGCGAGCCTTCCCTT
TTGCCGTGGCTCTGCCTTCGCCTATCCGGGGGGCACACACCCTCTCCTCG
CTTCACACTCTTGTGTCACACCGCAAACATCTCGGGGTAGAACTTGTTTA
TCCTCAACAAAGCACCACCGGAAGGTACCTAGTAGAGGGCGATTTTACAG
TGTCTATCTGGTTCTCAGCCAGCTCCCCAGTCGAATGGGAGAGATATAGT
TGACCACTGCTGCTGCTGCTGCTGCTGCTGCTGGTGAGCAGCAAGCAATG
CCCGTTCTTTGTTACTGGGCCCCCCACCTTTTCTCCTCTCTTGTCTCCTG
TGACTGGGAGGGGAAGCGGGCAGTTTTACTGCCCTAGGGGACCAAGGAGG
TTGCCCTAGGGTGCAGTTGATATTCTCAGTTCCATCGTTATCACAGCACC
AATAAAGTTGCACGTAAGATCAGAGACATGCCTGAAAACCGCAACGCTCC
ACCTGCGTAGACTATGCGGCGCAACAAGGCTCACCACGAGTTGCGCGTGC
GCGTGGTTTGTTTTGTACCGGTATGTTAGTTGGCGACCGCCCCGGCACTT
GCCTTGGCCAACAGCGTTTCCGCGTTCGTGTCCAGACGTATCGCACCTAC
ACACCTACAGATACGAGTTTTGGTACAGCAGTACGAGCTGGTATTGTGTA
CCGCAATGTACACTTATATCTCAAAGGTATGA back to topCoding sequence (CDS) from alignment at C-linearis_contig10:2171617..2172598+ >mRNA_C-linearis_contig10.547.1 ID=mRNA_C-linearis_contig10.547.1|Name=mRNA_C-linearis_contig10.547.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at C-linearis_contig10:2171617..2172598+ (Chordaria linearis ClinC8C monoicous)
ATGGCACCCGCACCCAAGAAGGTCATCGGTGTCTCCGCCACGACGAAGAT
CGCGCGGAAGACGCGGCCGTCCCACCACAAGGGGATGGCACCCGCACCCA
AGAAGGTCATCGGTGTCTCCGCCACGACGAAGATCGCGCGGAAGACGCGG
CCGTCCCACCACAAGGGGTTGGCGACCGCCCCGGCACTTGCCTTGGCCAA
CAGCGTTTCCGCGTTCGTGTCCAGACGTATCGCACCTACACACCTACAGA
TACGAGTTTTGGTACAGCAGTACGAGCTGGTATTGTGTACCGCAATGTAC
ACTTATATCTCAAAGGTATGATTGGCGACCGCCCCGGCACTTGCCTTGGC
CAACAGCGTTTCCGCGTTCGTGTCCAGACGTATCGCACCTACACACCTAC
AGATACGAGTTTTGGTACAGCAGTACGAGCTGGTATTGTGTACCGCAATG
TACACTTATATCTCAAAGGTATGA back to top
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