mRNA_C-linearis_contig10.547.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.547.1
Unique NamemRNA_C-linearis_contig10.547.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2171617..2172598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L36e
Ec32 orthologEc-22_003050.1
Exons2
Model size237
Cds size237
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927323.4366026-CDS-C-linearis_contig10:2171616..21717001622927323.4366026-CDS-C-linearis_contig10:2171616..2171700Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2171617..2171700 +
1690879626.2879162-CDS-C-linearis_contig10:2171616..21717001690879626.2879162-CDS-C-linearis_contig10:2171616..2171700Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2171617..2171700 +
1622927323.4475942-CDS-C-linearis_contig10:2172445..21725981622927323.4475942-CDS-C-linearis_contig10:2172445..2172598Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2172446..2172598 +
1690879626.297332-CDS-C-linearis_contig10:2172445..21725981690879626.297332-CDS-C-linearis_contig10:2172445..2172598Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2172446..2172598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.547.1prot_C-linearis_contig10.547.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2171617..2172598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.547.1

>prot_C-linearis_contig10.547.1 ID=prot_C-linearis_contig10.547.1|Name=mRNA_C-linearis_contig10.547.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=79bp
MAPAPKKVIGVSATTKIARKTRPSHHKGLATAPALALANSVSAFVSRRIA
PTHLQIRVLVQQYELVLCTAMYTYISKV*
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mRNA from alignment at C-linearis_contig10:2171617..2172598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.547.1 ID=mRNA_C-linearis_contig10.547.1|Name=mRNA_C-linearis_contig10.547.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=982bp|location=Sequence derived from alignment at C-linearis_contig10:2171617..2172598+ (Chordaria linearis ClinC8C monoicous)
ATGGCACCCGCACCCAAGAAGGTCATCGGTGTCTCCGCCACGACGAAGAT
CGCGCGGAAGACGCGGCCGTCCCACCACAAGGGGGTGAGCGTCGATTGGT
GGATAGAGAGGAGGGGCAGAGAGAAATTTGCATGGAGCTGCCCTCTTTTG
GTGGTGCAGACGCACCACCACCTGGCGCTTTGGTCGCGAAGATGGGAGAG
GGCCAGGTTGGTTTGGGCTTGGTTCGGGATATTACAGTGGGTGGTTTAGG
TCTCCTTTGTGGGCTTTGGTGTGGTTGAGTGTACGAGCGAGCCTTCCCTT
TTGCCGTGGCTCTGCCTTCGCCTATCCGGGGGGCACACACCCTCTCCTCG
CTTCACACTCTTGTGTCACACCGCAAACATCTCGGGGTAGAACTTGTTTA
TCCTCAACAAAGCACCACCGGAAGGTACCTAGTAGAGGGCGATTTTACAG
TGTCTATCTGGTTCTCAGCCAGCTCCCCAGTCGAATGGGAGAGATATAGT
TGACCACTGCTGCTGCTGCTGCTGCTGCTGCTGGTGAGCAGCAAGCAATG
CCCGTTCTTTGTTACTGGGCCCCCCACCTTTTCTCCTCTCTTGTCTCCTG
TGACTGGGAGGGGAAGCGGGCAGTTTTACTGCCCTAGGGGACCAAGGAGG
TTGCCCTAGGGTGCAGTTGATATTCTCAGTTCCATCGTTATCACAGCACC
AATAAAGTTGCACGTAAGATCAGAGACATGCCTGAAAACCGCAACGCTCC
ACCTGCGTAGACTATGCGGCGCAACAAGGCTCACCACGAGTTGCGCGTGC
GCGTGGTTTGTTTTGTACCGGTATGTTAGTTGGCGACCGCCCCGGCACTT
GCCTTGGCCAACAGCGTTTCCGCGTTCGTGTCCAGACGTATCGCACCTAC
ACACCTACAGATACGAGTTTTGGTACAGCAGTACGAGCTGGTATTGTGTA
CCGCAATGTACACTTATATCTCAAAGGTATGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2171617..2172598+

>mRNA_C-linearis_contig10.547.1 ID=mRNA_C-linearis_contig10.547.1|Name=mRNA_C-linearis_contig10.547.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at C-linearis_contig10:2171617..2172598+ (Chordaria linearis ClinC8C monoicous)
ATGGCACCCGCACCCAAGAAGGTCATCGGTGTCTCCGCCACGACGAAGAT
CGCGCGGAAGACGCGGCCGTCCCACCACAAGGGGATGGCACCCGCACCCA
AGAAGGTCATCGGTGTCTCCGCCACGACGAAGATCGCGCGGAAGACGCGG
CCGTCCCACCACAAGGGGTTGGCGACCGCCCCGGCACTTGCCTTGGCCAA
CAGCGTTTCCGCGTTCGTGTCCAGACGTATCGCACCTACACACCTACAGA
TACGAGTTTTGGTACAGCAGTACGAGCTGGTATTGTGTACCGCAATGTAC
ACTTATATCTCAAAGGTATGATTGGCGACCGCCCCGGCACTTGCCTTGGC
CAACAGCGTTTCCGCGTTCGTGTCCAGACGTATCGCACCTACACACCTAC
AGATACGAGTTTTGGTACAGCAGTACGAGCTGGTATTGTGTACCGCAATG
TACACTTATATCTCAAAGGTATGA
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